Jatropha Genome Database

JcCA0077581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077581.10 + phase: 0 
         (175 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g064470.1 Cyclin-dependent kinase inhibitor chr07_pse...    86   1e-17

>IMGA|Medtr7g064470.1 Cyclin-dependent kinase inhibitor
           chr07_pseudomolecule_IMGAG_V3 12973348-12970246 E
           EGN_Mt090430 20090702
          Length = 208

 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 82/151 (54%), Gaps = 30/151 (19%)

Query: 1   MGKYMKKSKITADVAVMELSLSHSQSTTLGVRTRAKTLALQRLHXXXXXXXXXXXXXXXX 60
           MGKYMKKSKI  DVA + +  S S +T +GVRTRAKTLALQ+                  
Sbjct: 1   MGKYMKKSKIAGDVAAVIME-SPSHATAVGVRTRAKTLALQK---------SPPNHPDSS 50

Query: 61  XYLQLRSRRLEKHPPPLLNGTKKPEIPQQLASNKKLPKGSSRLSKVKAVAGDFEKVEEGE 120
            +LQLRSRRL K PPPL         P++  +    P G+ RL +        EK+  G 
Sbjct: 51  SFLQLRSRRLRKVPPPL--------PPRKDTA----PAGNLRLRECS-----VEKL--GN 91

Query: 121 GCFDKKCE-AEDLGIEASFGENYLEFESRER 150
            C +++ E  +D G+E SFGEN+ E + R+R
Sbjct: 92  LCAEEENENGDDFGVEGSFGENFAEIDGRDR 122