Jatropha Genome Database

JcCA0077471.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077471.20 + phase: 0 
         (113 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g148240.1 Ubiquitin chr07_pseudomolecule_IMGAG_V3 350...   154   7e-39
IMGA|Medtr7g129900.1 Membrane-anchored ubiquitin-fold protein 3 ...   112   4e-26
IMGA|Medtr6g014210.1 Membrane-anchored ubiquitin-fold protein 1 ...   101   8e-23
IMGA|Medtr7g011570.1 Ubiquitin chr07_pseudomolecule_IMGAG_V3 285...    97   1e-21
IMGA|Medtr7g011570.2 Ubiquitin chr07_pseudomolecule_IMGAG_V3 285...    97   2e-21

>IMGA|Medtr7g148240.1 Ubiquitin chr07_pseudomolecule_IMGAG_V3
           35083272-35090076 E EGN_Mt090430 20090702
          Length = 118

 Score =  154 bits (390), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 71/108 (65%), Positives = 89/108 (82%)

Query: 1   MPEEDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINS 60
           MP+++LV+LKFR+YDGSDIGPF YS +STV MLK+RI ++WPK K + P+A +++KLIN+
Sbjct: 1   MPDDELVELKFRIYDGSDIGPFSYSPSSTVSMLKERIFAEWPKDKKIIPRAASDIKLINA 60

Query: 61  GKILDNNKTLGQCRTPFGEAAGGVIIMHVVVQPSLAKSKTGNWCAPVP 108
           GKIL+NNKT+GQCR PFGE   GVI MHVVVQPSLAK+KT      VP
Sbjct: 61  GKILENNKTVGQCRVPFGELPTGVITMHVVVQPSLAKAKTEKKVDDVP 108


>IMGA|Medtr7g129900.1 Membrane-anchored ubiquitin-fold protein 3
           precursor, putative chr07_pseudomolecule_IMGAG_V3
           30209339-30206158 E EGN_Mt090430 20090702
          Length = 144

 Score =  112 bits (281), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 77/100 (77%), Gaps = 2/100 (2%)

Query: 4   EDLVDLKFRLYDGSDIGPFRY-SSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGK 62
           E+ ++LKFR+YDG+DI    Y +S +TV  LKQ+++++WP+GKTVTPK+VN++KLI++GK
Sbjct: 5   EERIELKFRIYDGTDIAHDTYPASTTTVGALKQKLITEWPQGKTVTPKSVNDIKLIHAGK 64

Query: 63  ILDNNKTLGQCRTPFGEAAGGVIIMHVVVQPSLAKSKTGN 102
           +L N++TL + R   G+  G  I MHVVVQP +AK KTG 
Sbjct: 65  VLGNSETLAESRITIGDIPGA-ITMHVVVQPPVAKKKTGE 103


>IMGA|Medtr6g014210.1 Membrane-anchored ubiquitin-fold protein 1
          precursor, putative chr06_pseudomolecule_IMGAG_V3
          3236870-3234508 E EGN_Mt090430 20090702
          Length = 117

 Score =  101 bits (252), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 67/91 (73%)

Query: 3  EEDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGK 62
          ++D +++KFRL DGSDIGP  +++A+++  LK+ I++ WPK K   PK V +VKLI +GK
Sbjct: 4  KQDQLEIKFRLSDGSDIGPKSFAAATSIATLKESILTQWPKDKEYGPKTVKDVKLICAGK 63

Query: 63 ILDNNKTLGQCRTPFGEAAGGVIIMHVVVQP 93
          IL+NNKT+ +C++P     GGV  M VVVQP
Sbjct: 64 ILENNKTVEECQSPLCNLPGGVTTMLVVVQP 94


>IMGA|Medtr7g011570.1 Ubiquitin chr07_pseudomolecule_IMGAG_V3
          2853883-2857121 E EGN_Mt090430 20090702
          Length = 119

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 67/92 (72%), Gaps = 2/92 (2%)

Query: 4  EDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGKI 63
          ++  ++KFRL DGSDIGP  + +A+++  LK+ I++ WPK K   P+ + ++KLI++GKI
Sbjct: 5  QEQFEIKFRLTDGSDIGPKSFPAATSIATLKESILAQWPKDKENVPRTIKDLKLISAGKI 64

Query: 64 LDNNKTLGQC--RTPFGEAAGGVIIMHVVVQP 93
          L+NNKT+G+C  ++P  +  G V  MHVVVQP
Sbjct: 65 LENNKTVGECQSQSPLCDTPGTVTTMHVVVQP 96


>IMGA|Medtr7g011570.2 Ubiquitin chr07_pseudomolecule_IMGAG_V3
          2853883-2857087 E EGN_Mt090430 20090702
          Length = 112

 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 67/92 (72%), Gaps = 2/92 (2%)

Query: 4  EDLVDLKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTVTPKAVNEVKLINSGKI 63
          ++  ++KFRL DGSDIGP  + +A+++  LK+ I++ WPK K   P+ + ++KLI++GKI
Sbjct: 5  QEQFEIKFRLTDGSDIGPKSFPAATSIATLKESILAQWPKDKENVPRTIKDLKLISAGKI 64

Query: 64 LDNNKTLGQC--RTPFGEAAGGVIIMHVVVQP 93
          L+NNKT+G+C  ++P  +  G V  MHVVVQP
Sbjct: 65 LENNKTVGECQSQSPLCDTPGTVTTMHVVVQP 96