Jatropha Genome Database

JcCA0077471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077471.10 - phase: 0 
         (88 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g150910.1 Pseudouridine synthase, RluD chr03_pseudomo...   130   2e-31

>IMGA|Medtr3g150910.1 Pseudouridine synthase, RluD
          chr03_pseudomolecule_IMGAG_V3 39853467-39860744 E
          EGN_Mt090430 20090702
          Length = 380

 Score =  130 bits (326), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/76 (81%), Positives = 68/76 (89%), Gaps = 2/76 (2%)

Query: 1  MKRKREEENRNDMEIVWQTPANPPEKQDYIIRDGRRHVRPYHFEFISHVKNRWAGKTIVD 60
          MKRKREE  +  M+IVWQTPANPP  QDYI+R+G R VRPY+FEFI+HVKNRWAGKTIVD
Sbjct: 2  MKRKREE--KECMDIVWQTPANPPLPQDYIVRNGIRFVRPYYFEFIAHVKNRWAGKTIVD 59

Query: 61 LFAEEFKGRPYEYYVS 76
          LFAEEFKGRPYEYYVS
Sbjct: 60 LFAEEFKGRPYEYYVS 75