Jatropha Genome Database

JcCA0077451.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0077451.20 - phase: 2 /TE/pseudo/partial
         (202 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g080870.1 Peptidase aspartic, catalytic chr02_pseudom...    75   2e-14

>IMGA|Medtr2g080870.1 Peptidase aspartic, catalytic
           chr02_pseudomolecule_IMGAG_V3 18773924-18773065 H
           EGN_Mt090430 20090702
          Length = 229

 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 50/77 (64%)

Query: 126 RLPPKCKDRGMFAIPCKIGNVGIKRSMCDLGASINVMPLSVYSSFKGCPLKETRIIIQLA 185
           R+P K  D G F IPC IGN+ I +++CDLG SIN++PLS+        +K  R+ + L 
Sbjct: 61  RIPQKKTDPGSFTIPCSIGNLNINKALCDLGTSINLIPLSMMKKLGNLVVKLARMTLSLV 120

Query: 186 DRSIVYPVGLLEDVLVQ 202
           D SI +P  ++EDVLV+
Sbjct: 121 DCSIKHPFTVVEDVLVK 137