Jatropha Genome Database

JcCA0076441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076441.10 + phase: 0 
         (219 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g137170.1 Acetolactate synthase, small subunit chr04_...   184   3e-47

>IMGA|Medtr4g137170.1 Acetolactate synthase, small subunit
           chr04_pseudomolecule_IMGAG_V3 33711444-33718733 E
           EGN_Mt090430 20090702
          Length = 441

 Score =  184 bits (466), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 97/122 (79%)

Query: 79  RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKALFTIVVSGTXXXXXXXXX 138
           RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLN+D+ALFTIVVSGT         
Sbjct: 74  RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNQDRALFTIVVSGTDRVLRQVVE 133

Query: 139 XXXXXXXXXXXXDLSSEPQVERELMLIKVNADPNYRAEIKWLVEIFRAKIVDISEHSVTI 198
                       DLS EPQVERELML+KV+ADP  RAEIKWLV+ FRAKIVDISEHSVTI
Sbjct: 134 QLQKLVNVLKVEDLSREPQVERELMLVKVHADPQNRAEIKWLVDTFRAKIVDISEHSVTI 193

Query: 199 EV 200
           EV
Sbjct: 194 EV 195



 Score = 94.0 bits (232), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/126 (40%), Positives = 74/126 (58%), Gaps = 2/126 (1%)

Query: 79  RRHTISVFVGDESGMINRIAGVFARRGYNIESLAVGLNKDKAL--FTIVVSGTXXXXXXX 136
           R HT+S+ V D  G++N + GVFARRGYNI+SLAVG ++ + +   T VV GT       
Sbjct: 307 RSHTLSMLVNDAPGVLNIVTGVFARRGYNIQSLAVGHSEVEGISRLTTVVPGTDESISKL 366

Query: 137 XXXXXXXXXXXXXXDLSSEPQVERELMLIKVNADPNYRAEIKWLVEIFRAKIVDISEHSV 196
                         D++  P  ERELMLIK+  +   R ++  +  IFRAK VD+S+H++
Sbjct: 367 VQQLYKLVELREVRDITHLPFAERELMLIKIAVNAAARRDVLDIASIFRAKAVDVSDHTI 426

Query: 197 TIEVMN 202
           T+E +N
Sbjct: 427 TLEDLN 432