Jatropha Genome Database

JcCA0076141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076141.10 + phase: 2 /pseudo/partial
         (378 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g005340.1 hypothetical protein chr03_pseudomolecule_I...   297   6e-81

>IMGA|Medtr3g005340.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 250110-240700 E
           EGN_Mt090430 20090702
          Length = 559

 Score =  297 bits (760), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 139/193 (72%), Positives = 157/193 (81%)

Query: 186 FTEFFCNPVSLTLAPTKWHKFTATLMVVLNTFDAQPLSXXXXXXXXXXXXXXTFNIKYLT 245
             E+F NP  +  +  KW KFT++L+VVLNTF+AQPLS               F+IKYLT
Sbjct: 234 LQEYFSNPAPIIHSTFKWKKFTSSLLVVLNTFEAQPLSDEEGDANNLEEEAVNFSIKYLT 293

Query: 246 SSKLMGLELKDPSFRRHILVQCLILFDYLKAPGKNDKDLTSESMKEEIKTCEERVKKLLE 305
           SSKLMGLELKDPSFRRH+LVQCLILF+YLKAPGK DKDL SE+MK+EI +CEERVKKL+E
Sbjct: 294 SSKLMGLELKDPSFRRHVLVQCLILFNYLKAPGKGDKDLPSETMKDEITSCEERVKKLIE 353

Query: 306 MTPPKGKDFLHMVEHILEREKNWVWWKRDGCPAFEKQPIENKMVQDGVKKRKPRWRLGNK 365
           +TPPKGK+FLH +EHILEREKNWVWWKRDGCP +EKQ  E K V DG KKRKPRWRLGNK
Sbjct: 354 LTPPKGKEFLHKIEHILEREKNWVWWKRDGCPPYEKQATEKKAVPDGSKKRKPRWRLGNK 413

Query: 366 ELSQLWKWADQNP 378
           ELSQLWKWADQNP
Sbjct: 414 ELSQLWKWADQNP 426