Jatropha Genome Database

JcCA0076121.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076121.30 - phase: 2 /pseudo/partial
         (287 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g070540.2 hypothetical protein chr08_pseudomolecule_I...   122   3e-28
IMGA|Medtr8g070540.1 TTN9, related chr08_pseudomolecule_IMGAG_V3...   121   4e-28
IMGA|Medtr8g070540.3 TTN9, putative chr08_pseudomolecule_IMGAG_V...   116   1e-26

>IMGA|Medtr8g070540.2 hypothetical protein
           chr08_pseudomolecule_IMGAG_V3 13481792-13474099 E
           EGN_Mt090430 20090702
          Length = 292

 Score =  122 bits (305), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 82/242 (33%), Positives = 116/242 (47%), Gaps = 41/242 (16%)

Query: 46  KRKRRMLSEEVEKLQGQLFLSSKDDKNDQVTSGEMIGDSLRRTTRKRSQEART--DLEGI 103
           K+K   L EEVEKLQ  L   +  D +++        +S  R TRKR ++ +   D+E  
Sbjct: 88  KKKNEALFEEVEKLQKLLKEGTSGDLSNRKVVNNTSNNSSIRMTRKRMRQEQDALDIEAR 147

Query: 104 VTPNQSDHHDLLVXXXXXXXXXXXXEMDAVSTPGQSYQDDLLVRELAEGSSRGTMSGANL 163
             P++++                          G S   +     L E +S    S +  
Sbjct: 148 CIPSENE--------------------------GNSVDRESTRSFLKENASNKECSSSKA 181

Query: 164 ENVKQVILQPEFCRRTVQISANNSSTNCQFQALIEYLLGMKFSTVIQSDDRICISALHQS 223
            +   V  Q             +   N    AL EY L MK ST  Q+  R+C+SA+HQS
Sbjct: 182 NDQSGVDTQE------------SDHQNWLVHALFEYTLDMKLSTDCQTG-RLCLSAMHQS 228

Query: 224 SGYSFILTWVDKDSAKEPELLYRASTLGTFERVAPEWMRSVLMFSTSMCPIFFERIARVI 283
           SGYSF ++W+ +   +E ELLY   +LGT ER+APEWMR  +MFS +MCPIFFER+  VI
Sbjct: 229 SGYSFSISWISRAPGEEAELLYHVLSLGTLERLAPEWMREDIMFSPTMCPIFFERVTHVI 288

Query: 284 KM 285
            +
Sbjct: 289 NL 290


>IMGA|Medtr8g070540.1 TTN9, related chr08_pseudomolecule_IMGAG_V3
           13481792-13474099 E EGN_Mt090430 20090702
          Length = 294

 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/242 (33%), Positives = 118/242 (48%), Gaps = 39/242 (16%)

Query: 46  KRKRRMLSEEVEKLQGQLFLSSKDDKNDQVTSGEMIGDSLRRTTRKRSQEART--DLEGI 103
           K+K   L EEVEKLQ  L   +  D +++        +S  R TRKR ++ +   D+E  
Sbjct: 88  KKKNEALFEEVEKLQKLLKEGTSGDLSNRKVVNNTSNNSSIRMTRKRMRQEQDALDIEAR 147

Query: 104 VTPNQSDHHDLLVXXXXXXXXXXXXEMDAVSTPGQSYQDDLLVRELAEGSSRGTMSGANL 163
             P++++ + +                D  ST     ++    R+    S     SG + 
Sbjct: 148 CIPSENEGNSV----------------DRESTRSFLKENASNKRQECSSSKANDQSGVD- 190

Query: 164 ENVKQVILQPEFCRRTVQISANNSSTNCQFQALIEYLLGMKFSTVIQSDDRICISALHQS 223
                              +  +   N    AL EY L MK ST  Q+  R+C+SA+HQS
Sbjct: 191 -------------------TQESDHQNWLVHALFEYTLDMKLSTDCQTG-RLCLSAMHQS 230

Query: 224 SGYSFILTWVDKDSAKEPELLYRASTLGTFERVAPEWMRSVLMFSTSMCPIFFERIARVI 283
           SGYSF ++W+ +   +E ELLY   +LGT ER+APEWMR  +MFS +MCPIFFER+  VI
Sbjct: 231 SGYSFSISWISRAPGEEAELLYHVLSLGTLERLAPEWMREDIMFSPTMCPIFFERVTHVI 290

Query: 284 KM 285
            +
Sbjct: 291 NL 292


>IMGA|Medtr8g070540.3 TTN9, putative chr08_pseudomolecule_IMGAG_V3
           13478324-13474099 E EGN_Mt090430 20090702
          Length = 128

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 68/96 (70%), Gaps = 1/96 (1%)

Query: 190 NCQFQALIEYLLGMKFSTVIQSDDRICISALHQSSGYSFILTWVDKDSAKEPELLYRAST 249
           N    AL EY L MK ST  Q+  R+C+SA+HQSSGYSF ++W+ +   +E ELLY   +
Sbjct: 32  NWLVHALFEYTLDMKLSTDCQTG-RLCLSAMHQSSGYSFSISWISRAPGEEAELLYHVLS 90

Query: 250 LGTFERVAPEWMRSVLMFSTSMCPIFFERIARVIKM 285
           LGT ER+APEWMR  +MFS +MCPIFFER+  VI +
Sbjct: 91  LGTLERLAPEWMREDIMFSPTMCPIFFERVTHVINL 126