Jatropha Genome Database

JcCA0076121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076121.10 + phase: 0 /pseudo/partial
         (145 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g009030.1 THUMP chr05_pseudomolecule_IMGAG_V3 1873897...   105   9e-24

>IMGA|Medtr5g009030.1 THUMP chr05_pseudomolecule_IMGAG_V3
           1873897-1878562 F EGN_Mt090430 20090702
          Length = 378

 Score =  105 bits (261), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/70 (68%), Positives = 56/70 (80%)

Query: 76  LYEARANTGIDRMKIINSVAKSVPGPHKVDLSNPXXXXXXXXXXXXCLIGVVEKYKELAK 135
           +YEARANTG+DRM+II++VAKS+P PHKVDLSNP            CLIGVVEKYKEL+K
Sbjct: 308 MYEARANTGVDRMEIIDAVAKSIPAPHKVDLSNPDKTIIVEIARTVCLIGVVEKYKELSK 367

Query: 136 YNMRQLTSPK 145
           YN+RQLTS K
Sbjct: 368 YNIRQLTSTK 377