Jatropha Genome Database

JcCA0076041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0076041.10 - phase: 0 /partial
         (78 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g111270.1 Homoserine dehydrogenase chr03_pseudomolecu...    87   3e-18

>IMGA|Medtr3g111270.1 Homoserine dehydrogenase
           chr03_pseudomolecule_IMGAG_V3 28220584-28225725 F
           EGN_Mt090430 20090702
          Length = 376

 Score = 86.7 bits (213), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/77 (55%), Positives = 52/77 (67%)

Query: 1   MDVXXXXXXXXXXXXXXINLDNIEIESLYPDEMGPHAMSVEKFLGSGIALLDNNIQERVK 60
           MDV              IN+D+I+IESLYP EMGP  M+ + FL  G+ LLD +IQERV+
Sbjct: 234 MDVARKALILARILGRRINMDSIQIESLYPKEMGPDVMTDDDFLSCGLLLLDKDIQERVE 293

Query: 61  KASLNQNVLRYVCVIEG 77
           KA+ N NVLRYVCVIEG
Sbjct: 294 KAASNGNVLRYVCVIEG 310