Jatropha Genome Database

JcCA0075511.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075511.20 + phase: 1 /TE
         (566 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g077370.1 Zinc finger, CCHC-type; Retrotransposon gag...    65   1e-10
IMGA|Medtr3g031200.1 Zinc finger, CCHC-type; Retrotransposon gag...    57   3e-08
IMGA|Medtr8g024350.1 Zinc finger, CCHC-type; Retrotransposon gag...    52   6e-07

>IMGA|Medtr6g077370.1 Zinc finger, CCHC-type; Retrotransposon gag
           protein chr06_pseudomolecule_IMGAG_V3 15286441-15282892
           H EGN_Mt090430 20090702
          Length = 480

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 4/122 (3%)

Query: 1   KLVCATSLLIDEAYTWWITVQQRVSAEQR--TWQFFLDEFKKKFITEAYLDARRKEFLYL 58
           K+   T  L +EA  WW+ +   +  E    TW  F  EF +++  E     +  EFL L
Sbjct: 206 KVRFGTHQLAEEADDWWVALLPTLGQEGAVVTWAVFRREFLRRYFPEDVRGKKEIEFLEL 265

Query: 59  RQNRMSVAEYEREFTRLSRYGERIVATEAE--RCKKFQEGLNDEIQMGVVASRFREFSAL 116
           +Q  MSV EY  +F  LS++     A  +E  RC KF+ GL  +I+  +   + R F  L
Sbjct: 266 KQGNMSVTEYAAKFVELSKFYPHYTAENSEFSRCIKFENGLRPDIKRALGYQQLRVFQDL 325

Query: 117 VE 118
           V 
Sbjct: 326 VN 327


>IMGA|Medtr3g031200.1 Zinc finger, CCHC-type; Retrotransposon gag
           protein chr03_pseudomolecule_IMGAG_V3 8695193-8694208 H
           EGN_Mt090430 20090702
          Length = 308

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 20/126 (15%)

Query: 1   KLVCATSLLIDEAYTWWITVQQRV--SAEQRTWQFFLDEFKKKFITEAYLDARRKEFLYL 58
           K+  AT LL+ +A  WW   +  +  + E+ +W+ F  +F +++  ++       +FL L
Sbjct: 99  KVKYATHLLLGDAEYWWKNAKNMLENAQEEISWEVFQTKFLERYFPQSARTKLGDDFLKL 158

Query: 59  RQNRMSVAEYEREFTRLSRYGERIVATEAERCKKFQEGLNDEIQMGVVASRFREFSALVE 118
           +Q  M+  +                  EA  C +FQEGL DEIQ  V+    ++F  LVE
Sbjct: 159 QQGNMTTVD------------------EAYMCHRFQEGLKDEIQDMVMPLGIQQFHPLVE 200

Query: 119 XAQEIE 124
             +EIE
Sbjct: 201 KCREIE 206


>IMGA|Medtr8g024350.1 Zinc finger, CCHC-type; Retrotransposon gag
           protein chr08_pseudomolecule_IMGAG_V3 4561285-4560299 H
           EGN_Mt090430 20090702
          Length = 304

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 24/126 (19%)

Query: 1   KLVCATSLLIDEAYTWWITVQQRV--SAEQRTWQFFLDEFKKKFITEAYLDARRKEFLYL 58
           K+  AT LL+ +A  WW   +  +  + E+ +W+ F  +F +++  ++       +FL L
Sbjct: 99  KVKYATYLLLGDADYWWKNAKNMLENAQEEISWEVFQTKFLERYFPQSARTKLGDDFLKL 158

Query: 59  RQNRMSVAEYEREFTRLSRYGERIVATEAERCKKFQEGLNDEIQMGVVASRFREFSALVE 118
           +Q  M+                      A  C +FQEGL DEIQ  V+    ++F  LVE
Sbjct: 159 QQGNMT----------------------AYMCHRFQEGLKDEIQDMVMPLGIQQFHPLVE 196

Query: 119 XAQEIE 124
             +EIE
Sbjct: 197 KCREIE 202