Jatropha Genome Database
- JcCA0075511.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0075511.10 + phase: 0 /TE
(1209 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 270 2e-72
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 258 1e-68
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 257 2e-68
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 254 2e-67
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 250 3e-66
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 240 3e-63
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 166 6e-41
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 155 8e-38
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 124 3e-28
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 98 3e-20
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 93 7e-19
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 89 1e-17
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 78 3e-14
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 68 3e-11
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 60 9e-09
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 57 5e-08
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 55 2e-07
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 53 8e-07
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 51 3e-06
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 50 8e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 270 bits (691), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/270 (49%), Positives = 181/270 (67%)
Query: 935 ISPSYTSFVSNVLKIPEPISFHQANKDLNWVQAMQKELVALEENKTWVLFDLPKGKKPIG 994
IS ++ SF+S++ PEP ++ +A+K W +AMQ EL+ALE+ TW + DLP KPIG
Sbjct: 722 ISTNHASFISSLQTTPEPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIG 781
Query: 995 SKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGLDYTETFSPVAKLVTVRIFLAIVASKGW 1054
+W+Y+VK+ DG ++RYKA LVAKGYTQ+ GLDY ET+SPVAKL TVR+ +A+ + W
Sbjct: 782 CRWIYKVKHNADGSIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNW 841
Query: 1055 SLHQLDINNAYLHNFCTEDIYMIPPAGYTKAIPRXVCKLYRSLYGLKQADRQWNRELTKH 1114
LHQLD+NNA+LH ED+YMI P G A P VCKL +SLYGLKQA RQW +LT
Sbjct: 842 HLHQLDVNNAFLHGELQEDVYMILPPGINIAKPHQVCKLKKSLYGLKQASRQWYEKLTSV 901
Query: 1115 LGEYGFQQSQNGQCLFTKGTKSDFLALLLYVDDILITGLYEKLIINVKQFLHDKFTNKNI 1174
L + + Q+ + LF K + F LL+YVDDI++ G N+K L F K++
Sbjct: 902 LIQQHYIQASSDHSLFIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDL 961
Query: 1175 GYAKFFLGLEIAISETAICVTQRKYIMDLV 1204
G K+FLG+E+A S+ I + QRKY +DL+
Sbjct: 962 GQLKYFLGIEVAHSKLGISLYQRKYCLDLL 991
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 258 bits (659), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 132/288 (45%), Positives = 182/288 (63%), Gaps = 5/288 (1%)
Query: 924 PSSALLPTSLCISPSY-----TSFVSNVLKIPEPISFHQANKDLNWVQAMQKELVALEEN 978
P +AL +SP SF+ N+ EP S+ +A+ D W +AM +E +AL +N
Sbjct: 303 PLNALFTLKHYVSPDVFSFDSQSFIMNISHDCEPNSYEEASMDPAWQKAMTQEFLALHDN 362
Query: 979 KTWVLFDLPKGKKPIGSKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGLDYTETFSPVAK 1038
TW L +LPK KK +G +WVY+VK+K DG V+RYKA LV KGYTQ G+DYTETFSPV K
Sbjct: 363 NTWTLTNLPKDKKSVGCRWVYKVKHKADGSVERYKARLVVKGYTQHHGIDYTETFSPVVK 422
Query: 1039 LVTVRIFLAIVASKGWSLHQLDINNAYLHNFCTEDIYMIPPAGYTKAIPRXVCKLYRSLY 1098
+ TVR + A K W++HQLD+NNA+LH E++YM P G VCKL +SLY
Sbjct: 423 MTTVRTLIVAAAKKQWNIHQLDVNNAFLHGDLHEEVYMDIPPGLATPHKDLVCKLNKSLY 482
Query: 1099 GLKQADRQWNRELTKHLGEYGFQQSQNGQCLFTKGTKSDFLALLLYVDDILITGLYEKLI 1158
GLKQA RQW +LT+ L G++ S + LF K + + L +YVDDIL+TG I
Sbjct: 483 GLKQASRQWYEKLTEALHTRGYEHSPHDYSLFYKKRGASNVFLGVYVDDILLTGTDTNEI 542
Query: 1159 INVKQFLHDKFTNKNIGYAKFFLGLEIAISETAICVTQRKYIMDLVXE 1206
+K+FL ++F K++G +FLGLE+ + I V+QRK+++DL+ E
Sbjct: 543 DELKRFLDNQFKIKDLGRLHYFLGLEVLYKDDGILVSQRKFVLDLLKE 590
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 257 bits (657), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 129/270 (47%), Positives = 174/270 (64%)
Query: 935 ISPSYTSFVSNVLKIPEPISFHQANKDLNWVQAMQKELVALEENKTWVLFDLPKGKKPIG 994
+S S+ +F ++ EP ++ +A+K W QAMQ EL ALE TW L DLP KPI
Sbjct: 867 LSSSHCAFALSLDSHTEPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIV 926
Query: 995 SKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGLDYTETFSPVAKLVTVRIFLAIVASKGW 1054
+W+Y++K+ DG ++RYKA LVAKGY Q+ GLDY +T+SPVAKL TVR +A+ W
Sbjct: 927 CRWIYKIKHHADGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNW 986
Query: 1055 SLHQLDINNAYLHNFCTEDIYMIPPAGYTKAIPRXVCKLYRSLYGLKQADRQWNRELTKH 1114
+HQLD+NNA+LH ED+YMI P G T + VCKL +SLYGLKQA R+W +LT
Sbjct: 987 HIHQLDVNNAFLHGDLQEDVYMIVPQGITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSL 1046
Query: 1115 LGEYGFQQSQNGQCLFTKGTKSDFLALLLYVDDILITGLYEKLIINVKQFLHDKFTNKNI 1174
L + + QS + LF K T + F ALL+YVDD++ITG ++K LH K++
Sbjct: 1047 LVHHHYLQSTSDHSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDL 1106
Query: 1175 GYAKFFLGLEIAISETAICVTQRKYIMDLV 1204
G K+FLGLE+A S I + QRKY +DL+
Sbjct: 1107 GQLKYFLGLEVAHSSQGISLCQRKYCLDLL 1136
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 129/270 (47%), Positives = 176/270 (65%)
Query: 935 ISPSYTSFVSNVLKIPEPISFHQANKDLNWVQAMQKELVALEENKTWVLFDLPKGKKPIG 994
+S S + FV ++ PEP S+ +A+K W AMQ EL ALE+ TW L DLP KPIG
Sbjct: 876 LSNSRSFFVMSLHTQPEPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIG 935
Query: 995 SKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGLDYTETFSPVAKLVTVRIFLAIVASKGW 1054
+W+Y+VK+ DG V+RYKA LVAKGY Q+ GLDY +T+SPVAKL TVR+ +A+ + W
Sbjct: 936 CRWIYKVKFHADGTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNW 995
Query: 1055 SLHQLDINNAYLHNFCTEDIYMIPPAGYTKAIPRXVCKLYRSLYGLKQADRQWNRELTKH 1114
LHQLD+NNA+LH ED+YM+ P G + VCKL +SLYGLKQA R+W +LT
Sbjct: 996 HLHQLDVNNAFLHGDLQEDVYMMVPPGIKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSV 1055
Query: 1115 LGEYGFQQSQNGQCLFTKGTKSDFLALLLYVDDILITGLYEKLIINVKQFLHDKFTNKNI 1174
L + + Q+ + LF K T + F LL+YVDDI++ G ++K L F K++
Sbjct: 1056 LFDQHYTQATSDYSLFVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDL 1115
Query: 1175 GYAKFFLGLEIAISETAICVTQRKYIMDLV 1204
G K+FLG+E+A S+ I + QRKY +DL+
Sbjct: 1116 GQLKYFLGIEVAHSKLGISLCQRKYCLDLL 1145
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 250 bits (639), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 126/270 (46%), Positives = 177/270 (65%)
Query: 935 ISPSYTSFVSNVLKIPEPISFHQANKDLNWVQAMQKELVALEENKTWVLFDLPKGKKPIG 994
+S ++S+V ++ EP ++ +ANK W +AMQ EL ALE+ TW DLP KPIG
Sbjct: 850 LSSHHSSYVLSLHTHNEPKTYAEANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIG 909
Query: 995 SKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGLDYTETFSPVAKLVTVRIFLAIVASKGW 1054
+WV+++K DG ++RYKA LVAKGYTQ+ GLDY +TFSPVAKL TVR+ +A+ + W
Sbjct: 910 CRWVFKIKRHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHW 969
Query: 1055 SLHQLDINNAYLHNFCTEDIYMIPPAGYTKAIPRXVCKLYRSLYGLKQADRQWNRELTKH 1114
LHQLD+NNA+LH E++YM P G + VCKL +SLYGLKQA R+W +LT
Sbjct: 970 HLHQLDVNNAFLHGDLQENVYMTLPPGISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSI 1029
Query: 1115 LGEYGFQQSQNGQCLFTKGTKSDFLALLLYVDDILITGLYEKLIINVKQFLHDKFTNKNI 1174
L ++ + Q+ + LFTK T + + LL+YVDDI++ G + +K L F K++
Sbjct: 1030 LLKHQYTQAHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDL 1089
Query: 1175 GYAKFFLGLEIAISETAICVTQRKYIMDLV 1204
G KFFLGLE+A S+ I + Q+KY +DL+
Sbjct: 1090 GQLKFFLGLEVAHSQLGISLCQKKYCLDLL 1119
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 240 bits (612), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 115/242 (47%), Positives = 161/242 (66%)
Query: 968 MQKELVALEENKTWVLFDLPKGKKPIGSKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGL 1027
MQ E+ ALE+ TW + DLP KPIG +W++++K+ +DG ++RYKA LVAKGY Q+ GL
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 1028 DYTETFSPVAKLVTVRIFLAIVASKGWSLHQLDINNAYLHNFCTEDIYMIPPAGYTKAIP 1087
DY +T+SPVAKL TVR +A+ + W LHQ D+NNA+LH ED+YMI P G +
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPHSHQ 120
Query: 1088 RXVCKLYRSLYGLKQADRQWNRELTKHLGEYGFQQSQNGQCLFTKGTKSDFLALLLYVDD 1147
VCKL +SLYGL+QA +W +LT L G++Q+ + LF K T S F LL+YVDD
Sbjct: 121 DEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVDD 180
Query: 1148 ILITGLYEKLIINVKQFLHDKFTNKNIGYAKFFLGLEIAISETAICVTQRKYIMDLVXEA 1207
+++ G +K LHD F K+IG K+FLGLE+A S++ I + QRKY +DL+ ++
Sbjct: 181 VILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLEDS 240
Query: 1208 SI 1209
+
Sbjct: 241 GL 242
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 103/153 (67%)
Query: 935 ISPSYTSFVSNVLKIPEPISFHQANKDLNWVQAMQKELVALEENKTWVLFDLPKGKKPIG 994
IS S++ F+ ++ EP S+ +ANK W QAMQ EL ALE TW + DLP KPIG
Sbjct: 895 ISNSHSHFILSLHAHTEPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIG 954
Query: 995 SKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGLDYTETFSPVAKLVTVRIFLAIVASKGW 1054
+W+Y+VK+ DG ++RYKA LVAKGY Q+ GLDY +T+SPVAK T+R+ LA+ + W
Sbjct: 955 CRWIYKVKHHADGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNW 1014
Query: 1055 SLHQLDINNAYLHNFCTEDIYMIPPAGYTKAIP 1087
LHQLD+NNA+LH ED+YM P G + P
Sbjct: 1015 HLHQLDVNNAFLHGDLQEDVYMDIPPGVSTNKP 1047
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 382 NIGEWIIGTGCNDHLXPITLLFLIHYS------NXPNQNLXNYLMEVHXIVTIKLNDRII 435
+I WII +G NDH+ F Y PN + VH + +
Sbjct: 347 SIPSWIIDSGANDHVCFSKTHFTSFYKIKPVLVTLPNGTS----IYVHYAGNVHFTPYLH 402
Query: 436 LTNVLLIPSFKCNLISVTSLTKTNKIAVKSLPNCSIFQDLQSNEKIAIGHEQDGLYLLN 494
LT+VL P FK NLISV+ + + +V + N + QD+ S I +G + DGLY L+
Sbjct: 403 LTHVLYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYKLS 461
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H fold
chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 155 bits (393), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 136/272 (50%), Gaps = 62/272 (22%)
Query: 935 ISPSYTSFVSNVLKIPEPISFHQANKDLNWVQAMQKELVALEENKTWVLFDLPKGKKPIG 994
IS ++ F+ ++ EP ++ +ANK W QAMQ EL ALE TW + D P KPIG
Sbjct: 275 ISNPHSHFILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIG 334
Query: 995 SKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGLDYTETFSPVAKLVTVRIFLAIVASKGW 1054
+W+Y++K+ D ++RYKA LVAKGY Q+ GLDY +T+SPVAK T+R+ AS+ W
Sbjct: 335 CRWIYKIKHNADDTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRL-----ASRKW 389
Query: 1055 --SLHQLDINNAYLHNFCTEDIYMIPPAGYTKAIPRXVCKLYRSLYGLKQADRQWNRELT 1112
L L +N+ Y KQA
Sbjct: 390 YEKLASLLVNHGY-----------------------------------KQASAD------ 408
Query: 1113 KHLGEYGFQQSQNGQCLFTKGTKSDFLALLLYVDDILITGLYEKLIINVKQFLHDKFTNK 1172
LF K + + F ALL+YVDDI++ G +K LH+ F K
Sbjct: 409 --------------HSLFIKHSTTQFTALLVYVDDIILAGNSLDEFTFIKNILHNSFKIK 454
Query: 1173 NIGYAKFFLGLEIAISETAICVTQRKYIMDLV 1204
++G K+FLGLE+A S+ I + QRKY +DL+
Sbjct: 455 DLGQLKYFLGLEVAHSKLGISLCQRKYGLDLL 486
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 124 bits (311), Expect = 3e-28, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 81/148 (54%), Gaps = 28/148 (18%)
Query: 968 MQKELVALEENKTWVLFDLPKGKKPIGSKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGL 1027
MQ E+ ALE TW L DLP KPIG +W+Y++K+ DG + RYKA LV KGY Q+ G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 1028 DYTETFSPVAKL----------------------------VTVRIFLAIVASKGWSLHQL 1059
DY +T+SPVAKL TVR +A+ + W +H+L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 1060 DINNAYLHNFCTEDIYMIPPAGYTKAIP 1087
D N+A+LH ED+YM+ P G T + P
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGITTSKP 148
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 81/211 (38%), Gaps = 57/211 (27%)
Query: 935 ISPSYTSFVSNVLKIPEPISFHQANKDLNWVQAMQKELVALEENKTWVLFDLPKGKKPIG 994
+SPSY SF + EP SF QA D W AM EL ALE TW+
Sbjct: 136 LSPSYCSFTLAISSDIEPSSFKQAQSDPRWQLAMSPELSALEATGTWIF----------- 184
Query: 995 SKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGLDYTETFSPVAKLVTVRIFLAIVASKGW 1054
+D SP+ W
Sbjct: 185 --------------------------------VDPPPNISPIGS--------------KW 198
Query: 1055 SLHQLDINNAYLHNFCTEDIYMIPPAGYTKAIPRXVCKLYRSLYGLKQADRQWNRELTKH 1114
D NN +LH ED+YM PP G + P VCKL +SLYGLKQA R+W +L
Sbjct: 199 IFRLNDANNTFLHGDLQEDVYMHPPQGVSPPRPGQVCKLLKSLYGLKQASRRWFEKLISL 258
Query: 1115 LGEYGFQQSQNGQCLFTKGTKSDFLALLLYV 1145
L GF Q+ + + + F ALL+YV
Sbjct: 259 LLTIGFVQASADHSFLIRASPTSFTALLIYV 289
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 59/90 (65%)
Query: 935 ISPSYTSFVSNVLKIPEPISFHQANKDLNWVQAMQKELVALEENKTWVLFDLPKGKKPIG 994
IS ++ F+ ++ EP ++ +ANK W QAMQ EL ALE TW + D P KPIG
Sbjct: 368 ISNPHSHFILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIG 427
Query: 995 SKWVYRVKYKLDGGVDRYKAHLVAKGYTQL 1024
+W+Y++K+ DG ++RYKA LVAKGY QL
Sbjct: 428 CRWIYKIKHHADGTIERYKARLVAKGYNQL 457
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 63/94 (67%)
Query: 1093 LYRSLYGLKQADRQWNRELTKHLGEYGFQQSQNGQCLFTKGTKSDFLALLLYVDDILITG 1152
L +SLYGLKQA R W +L++ L EYGFQ+S LFT +S F+A+L+YVDD++I G
Sbjct: 5 LRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLVIAG 64
Query: 1153 LYEKLIINVKQFLHDKFTNKNIGYAKFFLGLEIA 1186
I N KQ+L F K++G K+FLGLE+A
Sbjct: 65 NDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELA 98
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 77.8 bits (190), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 58/93 (62%)
Query: 968 MQKELVALEENKTWVLFDLPKGKKPIGSKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGL 1027
M +L A+ W L L K K IG KW YR+K+K++G ++R+K L+ K YT+ G+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 1028 DYTETFSPVAKLVTVRIFLAIVASKGWSLHQLD 1060
+ +TFS VAK+ V + L+IV +KG L QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 1129 LFTKGTKSDFLALLLYVDDILITGLYEKLIINVKQFLHDKFTNKNIGYAKFFLGLEIAIS 1188
+FTK T S F LL+YVDDI++ G ++K LH F K++G K+ LGLE+A S
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHS 60
Query: 1189 ETAICVTQRKYIMDLV 1204
+ I + QRKY +DL+
Sbjct: 61 KQGISLCQRKYCLDLL 76
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 1139 LALLLYVDDILITGLYEKLIINVKQFLHDKFTNKNIGYAKFFLGLEIAISETAICVTQRK 1198
+A+L+YVDD++I G I N KQ+L F K++G K+FLGLE+A + + QRK
Sbjct: 1 MAVLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRK 60
Query: 1199 YIMDLVXEASI 1209
Y +D++ E +
Sbjct: 61 YTLDILDECKM 71
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 1076 MIPPAGYTKAI-PRXVCKLYRSLYGLKQADRQWNRELTKHLGEYGFQQSQNGQCLFTKGT 1134
M P G+ P VCKL +SLYGLKQA + W + L K L Y FQ +++ LF
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 1135 KSDFLALLLYVDDILIT 1151
+ F L+YVDDI +T
Sbjct: 61 ANTFAYFLVYVDDIPLT 77
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 991 KPIGSKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGLDY 1029
K +G +WVY++KYK G +++YKA LVAKGYTQ+ G D+
Sbjct: 12 KIVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDF 50
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Query: 977 ENKTWVLFDLPKGKKPIGSKWVYRVKYKLDGGVDRYKAHLVAKGYTQLLGLDYTETFSPV 1036
+N+TW L L GKK I KWV+++K +G + ++KA LVA+ + + G DYTE +
Sbjct: 209 KNQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVARVFLKKEGFDYTEVVFKL 268
Query: 1037 AKLVTVRIFLAIVASKGWS--LHQLDINNAYLHNFCTEDIYMIPPAGYTKAIPRXVC-KL 1093
K ++ A + W+ + + + + +Y+ G + I +C ++
Sbjct: 269 NKA----LYGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYVKGSEGTSLLI---ICLEI 321
Query: 1094 YRSLYGLKQADRQWNRELTKHLGEYGFQQS 1123
R+ GL +++ E+ K F S
Sbjct: 322 LRTTKGLILNQTKYDTEIQKKFNMLDFNSS 351
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 382 NIGEWIIGTGCNDHLXPITLLFLIHYS------NXPNQNLXNYLMEVHXIVTIKLNDRII 435
+I WII +G NDH+ F Y PN + VH + +
Sbjct: 347 SIPSWIIDSGANDHVCFSKTHFTSFYKIKPVLVTLPNGTS----IYVHYAGNVHFTPYLH 402
Query: 436 LTNVLLIPSFKCNLISVTSLTKTNKIAVKSLPNCSIFQDLQSNEKIAIGHEQDGLYLLN 494
LT+VL P FK NLISV+ + + +V + N + QD+ S I +G + DGLY L+
Sbjct: 403 LTHVLYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYKLS 461
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 10/129 (7%)
Query: 372 NKVFKCIDDKNIGEWIIGTGCNDHLXPITLLFLIHYS------NXPNQNLXNYLMEVHXI 425
N +F C W+I +G N+H+ LF +Y N PN + + V
Sbjct: 375 NTIFSCSLHVPSDHWLIDSGANEHICSSLHLFHSYYRIKPICVNLPNGSS----VIVQYA 430
Query: 426 VTIKLNDRIILTNVLLIPSFKCNLISVTSLTKTNKIAVKSLPNCSIFQDLQSNEKIAIGH 485
T+ + +T+VL PSFK LISV+ + ++ V L N + QD+++ + I +G+
Sbjct: 431 GTVVFSPHFHITHVLYSPSFKVYLISVSKICQSLPYHVHFLLNTYVIQDVKTQKMIGLGN 490
Query: 486 EQDGLYLLN 494
DGLY L+
Sbjct: 491 LCDGLYRLH 499