Jatropha Genome Database

JcCA0075421.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075421.20 - phase: 0 /pseudo
         (638 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g031040.1 hypothetical protein chr01_pseudomolecule_I...   105   5e-23
IMGA|Medtr1g031120.1 hypothetical protein chr01_pseudomolecule_I...    94   3e-19
IMGA|Medtr3g156340.1 hypothetical protein chr03_pseudomolecule_I...    86   6e-17

>IMGA|Medtr1g031040.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 7447668-7443745 E
           EGN_Mt090430 20090702
          Length = 626

 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 165/405 (40%), Gaps = 77/405 (19%)

Query: 196 VKHE-EQKPPCNSVNFCVPPGPHQDTNGLDQAVKLEISLLDRKPEIALG------QSMTI 248
           VKHE  +K   +    C+  G       L+   K  I   +RKP++ L       Q+   
Sbjct: 248 VKHECRKKVALDDSELCLAMG-------LNMTGKSRILQCERKPDVELDAHAFAFQARNF 300

Query: 249 GSQLDQHHTISESKNNGPALWPGLSSTVSTTASHGPLSQSCAVKVPAWLGSRPGFLQNXX 308
            S+  Q     + KN G ALWPGLSS VS   S                           
Sbjct: 301 DSKQKQQSMKEQVKNEGLALWPGLSS-VSYDVS--------------------------- 332

Query: 309 XXXXXXXXXTDRRSWKRCAAHGYISHLIRALQTSDG---KESLPVPQNQLRPHEILKQGV 365
                      +RS KRCA H YIS  IR+L++      KES     ++ R  E  K GV
Sbjct: 333 ----------PKRSRKRCATHVYISQTIRSLESPKQRVIKESNLHGCHETRASERSKYGV 382

Query: 366 LMTINDFNRSRTDLSGITSAASTIVNPVEKNSNDNKIGILQHLRPHQDNSPAALASGMYT 425
           L  + + NR    ++G+ +   T  NP E     +K GIL     + + S AA   G+Y 
Sbjct: 383 LSEVQNLNRM---INGVVTC-DTARNPYE-----SKNGILLQQCHYGEISQAASTYGVYG 433

Query: 426 SHKQSFNFLSLTAGGGGME-PNSSFNGVGNTLEPLAQLQVPYH---AQHPTLVPFSMSQT 481
             KQSFN LSL+ G  G++  ++++N V + LEPL+ + VPY    AQ   ++P    Q+
Sbjct: 434 PQKQSFNLLSLSTGSYGLKVDDNNYNKVRSRLEPLSNMHVPYFQSLAQQQRVMPIPTYQS 493

Query: 482 RYTS-AYTDXXXXXXXXXXXXXXHV--SSPYCVPHVSPKAMTKXXXXXXXXXXXXXXYRN 538
           RY S  Y +              H   S  Y   + S  +  +                +
Sbjct: 494 RYASTVYLNHMTVGGPQLQLQQPHYYGSQLYGTQYSSTVSNKQEQQKNLGMQQAAQGRSS 553

Query: 539 NGTSTATTQFPGWQSGRQDSPVLLPCIP------SPSTLEVVGPK 577
              +   TQ P WQSGR     + PC P      +P++ E+ G K
Sbjct: 554 VNWNIMRTQNPNWQSGRNYYSAMGPCAPQVIFPHTPTSQEIFGSK 598


>IMGA|Medtr1g031120.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 7481948-7484616 E
           EGN_Mt090430 20090702
          Length = 562

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 124/274 (45%), Gaps = 25/274 (9%)

Query: 320 RRSWKRCAAHGYISHLIRALQTSDG---KESLPVPQNQLRPHEILKQGVLMTINDFNRSR 376
           +RS KRCA H YIS  IR+L++      KES     ++ R  E  K GVL  + + NR  
Sbjct: 270 KRSRKRCATHVYISQTIRSLESPKQRVIKESNLHGCHETRASERSKYGVLSEVQNLNRM- 328

Query: 377 TDLSGITSAASTIVNPVEKNSNDNKIGILQHLRPHQDNSPAALASGMYTSHKQSFNFLSL 436
             ++G+ +   T  NP E     +K GIL     + + S AA   G+Y   KQSFN LSL
Sbjct: 329 --INGVVTC-DTARNPYE-----SKNGILLQQCHYGEISQAASTYGVYGPQKQSFNLLSL 380

Query: 437 TAGGGGME-PNSSFNGVGNTLEPLAQLQVPYH---AQHPTLVPFSMSQTRYTS-AYTDXX 491
           + G  G++  ++++N V + LEPL+ + VPY    AQ   ++P    Q+RY S  Y +  
Sbjct: 381 STGSYGLKVDDNNYNKVRSRLEPLSNMHVPYFQSLAQQQRVMPIPTYQSRYASTVYLNHM 440

Query: 492 XXXXXXXXXXXXHV--SSPYCVPHVSPKAMTKXXXXXXXXXXXXXXYRNNGTSTATTQFP 549
                       H   S  Y   + S  +  +                +   +   TQ P
Sbjct: 441 TVGGPQLQLQQPHYYGSQLYGTQYSSTVSNKQEQQKNLGMQQAAQGRSSVNWNIMRTQNP 500

Query: 550 GWQSGRQDSPVLLPCIP------SPSTLEVVGPK 577
            WQSGR     + PC P      +P++ E+ G K
Sbjct: 501 NWQSGRNYYSAMGPCAPQVIFPHTPTSQEIFGSK 534


>IMGA|Medtr3g156340.1 hypothetical protein
           chr03_pseudomolecule_IMGAG_V3 40981849-40978038 E
           EGN_Mt090430 20090702
          Length = 661

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 183/452 (40%), Gaps = 74/452 (16%)

Query: 222 GLDQAVKLEISLLDRKPEIALGQSMTIGSQLDQHHTISESKNNGPALWPGLSSTVSTTAS 281
           GL+ + + + S +  K E+       IG + +QH    + +N G  L PG +S       
Sbjct: 249 GLNVSTESQFSHIGGKVEVEYETVGGIGCKQEQHIIKYQRENEGLTLLPGSTS------- 301

Query: 282 HGPLSQSCAVKVPAWLG-----SRPGFLQNXXXXXXXXXXXTDRRSWKRCAAHGYISHLI 336
                 S A K P WL      S+   +++             ++SWK CAAH +IS LI
Sbjct: 302 ------SAAAKAPHWLNAAICNSKHDLMESCSSGGKISEPVVHKKSWKSCAAHVHISQLI 355

Query: 337 RALQT---SDGKESLPVPQNQLRPHEILKQGVLMTINDFNRSRTDLS---GITSAASTIV 390
           R+L+       KE      +Q R H+  K GVL+   + N +R   S   G   +AS  +
Sbjct: 356 RSLEVPKKHGAKEPERYECHQPRVHQGSKCGVLIKAQNSNGTRNGNSFDVGTVHSASLDI 415

Query: 391 NPVEKNSNDNKIGILQHLRPHQDNS-------PAALASGMYTSHKQSFNF--LSLTAGGG 441
            P  KN      GILQ    + D S       PA          KQ+FNF  LSL+AGG 
Sbjct: 416 FPETKN------GILQQQCHYLDISLSKDPPMPAKC-----DPLKQNFNFLSLSLSAGGN 464

Query: 442 GMEPNSSFNGVG-NTLEPLAQLQVPYH---AQHPTLVPF-SMSQTRYTS-AYTDXXXXXX 495
           G++    F   G   LE  ++ QVPY     Q   L+P  +    +YTS +Y D      
Sbjct: 465 GLKVEDCFTKGGIRRLEQFSKSQVPYFRSIQQQHGLMPIPTTPPNQYTSTSYIDQLPAAG 524

Query: 496 XXXXXXXXH-VSSPYCVPHVSPKAMTKXXXXXXXXXXXXXXYRNNGTSTATT--QFPGWQ 552
                   H   +P C  + S  A++                  +G +   T  Q+P W+
Sbjct: 525 PQVRLQQPHYYGTPLCGTNYS-SAISYKQQYQNFWAAQLVAQGGSGVNNNVTRVQYPNWR 583

Query: 553 SGRQDSPVLLP----CIP--SPSTLEVVGPKYPRISXXXXXXXXXXFMAFPLSDARAKRQ 606
           SGR ++  + P     +P  S ++LE +G K   I+            + PLS       
Sbjct: 584 SGRHETCAVNPGAQVMLPHHSLASLESLGSK---ITSTSEQQPFTPASSIPLS------- 633

Query: 607 DHHISSVYEENGVGFRAGGGPLPLQLLCNERL 638
              ++ V E  G     G     LQLLC+ER+
Sbjct: 634 --RMNGVEESRGRFH--GSCASSLQLLCDERI 661