Jatropha Genome Database

JcCA0075411.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075411.40 - phase: 2 /partial
         (59 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|AC233662_59.1 RNA-binding S4 AC233662.1 270219-271638 E EGN...    86   4e-18
IMGA|Medtr4g018910.1 Ribosomal protein S4 chr04_pseudomolecule_I...    85   1e-17
IMGA|Medtr3g012940.1 Ribosomal protein S4 chr03_pseudomolecule_I...    84   1e-17
IMGA|Medtr3g012920.1 Ribosomal protein S4 chr03_pseudomolecule_I...    84   1e-17
IMGA|Medtr4g018880.1 Ribosomal protein S4 chr04_pseudomolecule_I...    84   1e-17
IMGA|Medtr3g024710.1 Ribosomal protein S4, bacterial and organel...    84   2e-17
IMGA|Medtr8g112480.1 Ribosomal protein S4 chr08_pseudomolecule_I...    77   2e-15

>IMGA|AC233662_59.1 RNA-binding S4 AC233662.1 270219-271638 E
           EGN_Mt090430 20090702
          Length = 224

 Score = 86.3 bits (212), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 40/41 (97%), Positives = 40/41 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 41
           VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGG PGRVKRKN
Sbjct: 165 VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 205


>IMGA|Medtr4g018910.1 Ribosomal protein S4
          chr04_pseudomolecule_IMGAG_V3 3739481-3737283 E
          EGN_Mt090430 20090702
          Length = 73

 Score = 84.7 bits (208), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/41 (97%), Positives = 40/41 (97%)

Query: 1  VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 41
          VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGG PGRVKRKN
Sbjct: 14 VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 54


>IMGA|Medtr3g012940.1 Ribosomal protein S4
           chr03_pseudomolecule_IMGAG_V3 2297351-2295367 E
           EGN_Mt090430 20090702
          Length = 197

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/41 (97%), Positives = 40/41 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 41
           VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGG PGRVKRKN
Sbjct: 138 VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 178


>IMGA|Medtr3g012920.1 Ribosomal protein S4
           chr03_pseudomolecule_IMGAG_V3 2289880-2291742 E
           EGN_Mt090430 20090702
          Length = 197

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/41 (97%), Positives = 40/41 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 41
           VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGG PGRVKRKN
Sbjct: 138 VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 178


>IMGA|Medtr4g018880.1 Ribosomal protein S4
           chr04_pseudomolecule_IMGAG_V3 3729347-3731002 E
           EGN_Mt090430 20090702
          Length = 197

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/41 (97%), Positives = 40/41 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 41
           VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGG PGRVKRKN
Sbjct: 138 VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 178


>IMGA|Medtr3g024710.1 Ribosomal protein S4, bacterial and organelle
           form chr03_pseudomolecule_IMGAG_V3 6292777-6293640 E
           EGN_Mt090430 20090702
          Length = 197

 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/41 (97%), Positives = 40/41 (97%)

Query: 1   VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN 41
           VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGG PGRVKRKN
Sbjct: 138 VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKRKN 178


>IMGA|Medtr8g112480.1 Ribosomal protein S4
          chr08_pseudomolecule_IMGAG_V3 25267018-25261510 H
          EGN_Mt090430 20090702
          Length = 79

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/42 (90%), Positives = 38/42 (90%)

Query: 1  VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ 42
          VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGG PGRVK   Q
Sbjct: 4  VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVKVGRQ 45



 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/38 (97%), Positives = 37/38 (97%)

Query: 1  VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVK 38
          VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGG PGRVK
Sbjct: 42 VGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGLPGRVK 79