Jatropha Genome Database

JcCA0075411.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0075411.20 + phase: 0 
         (92 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g040160.1 Helix-loop-helix DNA-binding chr05_pseudomo...    74   2e-14
IMGA|Medtr7g009530.1 Helix-loop-helix DNA-binding, identical chr...    55   1e-08
IMGA|Medtr7g065170.1 hypothetical protein chr07_pseudomolecule_I...    53   3e-08

>IMGA|Medtr5g040160.1 Helix-loop-helix DNA-binding
          chr05_pseudomolecule_IMGAG_V3 17108849-17107589 F
          EGN_Mt090430 20090702
          Length = 93

 Score = 73.6 bits (179), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 57/78 (73%)

Query: 13 KITKNEIIDLILKLQALLPHINQRQDSRVSASKILKETCSYIGKLQREVDDLSEKLSQML 72
          +IT  +I DLI KLQ L+P ++  + ++VSA+K+L+ETC+YI  L REVDDLS++LSQ+L
Sbjct: 16 EITDAQITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLL 75

Query: 73 DSMDISNVDVESLISILL 90
           S D ++     + S+L+
Sbjct: 76 ASTDSNSAQAAIIRSLLM 93


>IMGA|Medtr7g009530.1 Helix-loop-helix DNA-binding, identical
          chr07_pseudomolecule_IMGAG_V3 1726600-1726149 H
          EGN_Mt090430 20090702
          Length = 68

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/54 (55%), Positives = 41/54 (75%), Gaps = 1/54 (1%)

Query: 39 SRVSASKILKETCSYIGKLQREVDDLSEKLSQMLDSMDISNVDVESLISILLQQ 92
          S+V ASK+L+ETC+YI  LQREVDDLS +LSQ+L ++D  + +  S+I  LL Q
Sbjct: 16 SKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEA-SIIRSLLNQ 68


>IMGA|Medtr7g065170.1 hypothetical protein
          chr07_pseudomolecule_IMGAG_V3 13340550-13340293 H
          EGN_Mt090430 20090702
          Length = 85

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 40/48 (83%)

Query: 42 SASKILKETCSYIGKLQREVDDLSEKLSQMLDSMDISNVDVESLISIL 89
          SASKIL+ET ++I +LQ+EV+DLSE+L+Q++DS+DI++ D  +L +  
Sbjct: 36 SASKILQETLNHIRRLQKEVEDLSERLTQLMDSVDINDNDRRTLENFF 83