Jatropha Genome Database

JcCA0074951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074951.10 + phase: 2 /pseudo
         (151 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g066790.1 Protein of unknown function DUF1218 chr05_p...   113   4e-26
IMGA|AC233672_3.1 Protein of unknown function DUF1218 AC233672.2...    58   2e-09

>IMGA|Medtr5g066790.1 Protein of unknown function DUF1218
           chr05_pseudomolecule_IMGAG_V3 23590960-23586653 E
           EGN_Mt090430 20090702
          Length = 191

 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 60/82 (73%)

Query: 70  EACLLAGATKNAYHTKYRGMIYAQNFSCETLRKXXXXXXXXXXXXTMILNVYYYMYFSKA 129
           E+CL+AGA KNAYHTKYRG+IYAQNFSCE+LRK            TM+LNVYYYMYF+KA
Sbjct: 110 ESCLIAGAKKNAYHTKYRGIIYAQNFSCESLRKGIFITGAIFIVVTMVLNVYYYMYFTKA 169

Query: 130 TAPQAASKANRTSSNVGMAGYA 151
           T    + K NR SS VGM GYA
Sbjct: 170 TTTPLSQKTNRVSSTVGMTGYA 191


>IMGA|AC233672_3.1 Protein of unknown function DUF1218 AC233672.2
           10435-11337 F EGN_Mt090430 20090702
          Length = 115

 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 3/78 (3%)

Query: 71  ACLLAGATKNAYHTKYRGMIYAQNFSCETLRKXXXXXXXXXXXXTMILNVYYYMYFSKAT 130
           +CLLAG+ KNAYHTKYR ++  +  SC+TLRK            T I++  YY+ FSKA 
Sbjct: 38  SCLLAGSVKNAYHTKYRDLLGERAPSCQTLRKGVFGAGAAFIVLTGIVSELYYVSFSKAN 97

Query: 131 ---APQAASKANRTSSNV 145
               P  A     T SN+
Sbjct: 98  NGGVPPYARDTGVTMSNL 115