Jatropha Genome Database

JcCA0074011.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0074011.10 - phase: 0 /pseudo
         (768 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr8g043930.1 Cyclin-like chr08_pseudomolecule_IMGAG_V3 9...  1040   0.0  
IMGA|Medtr2g013880.1 retinoblastoma-related protein, putative ch...   130   2e-30
IMGA|Medtr3g013710.1 retinoblastoma-related protein, putative ch...    90   5e-18

>IMGA|Medtr8g043930.1 Cyclin-like chr08_pseudomolecule_IMGAG_V3
           9647497-9639961 E EGN_Mt090430 20090702
          Length = 1025

 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/735 (71%), Positives = 594/735 (80%), Gaps = 24/735 (3%)

Query: 13  DGGNDATEVRFSEFCKTGLCLDEDTCKEALQLFKETKHLLSANISSIGNGT--------- 63
           + G+ A   RF+EF K  L LDE +CKEA+ LF ETKHLL AN+SS+GNGT         
Sbjct: 18  ENGDQAVS-RFAEFSKNELALDEKSCKEAMDLFGETKHLLMANVSSMGNGTIEEAERYWF 76

Query: 64  --------RLSEKXXXXXXXXXXXXGLTLCQILRCAKLNIVDFFKELPQYVVKAGPILSN 115
                   RL++K            GLTLC+ILR AKLNI DFFKELPQ+VVKAGPILSN
Sbjct: 77  AFILYSIKRLTQKNEESEKEEIENTGLTLCRILRAAKLNIADFFKELPQFVVKAGPILSN 136

Query: 116 MYGADWENRLEAKELQANFVHLSILSRHYKRAYRELFLTSDANVDKQSAVSSETAYLSEY 175
            +G+DWEN+LEAKE+ AN +HL ILS++YKR + E F+++DANV+ +S+V   T  +SE 
Sbjct: 137 RFGSDWENKLEAKEMHANTIHLKILSKYYKRVFEEFFVSTDANVENKSSV---TGRVSEC 193

Query: 176 HRFGWLLFLALRVHAFSRFKDLVTCTNGLVSVLAVLMIHVPVHCRNFNLNDSQWFVKKGD 235
           HRFGWLLFLALRVHAFSRFKDLVTCTNGL+S++A+L+IHVP   RNFN++DS  FVKK  
Sbjct: 194 HRFGWLLFLALRVHAFSRFKDLVTCTNGLISIMAILIIHVPARFRNFNIHDSARFVKKSS 253

Query: 236 KGVDLLASLCNKYDTSEDELRKTMEKTNNLIADLLKKKPRLAPECKNENLDDINPDGLIY 295
           KGVDLLASLCN Y+TSEDELRKTME+ NNL+AD+LKK P LA EC+ ENL+D + DGL Y
Sbjct: 254 KGVDLLASLCNIYNTSEDELRKTMEQANNLVADILKKTPCLASECETENLEDFDKDGLTY 313

Query: 296 YEDLMEESSLQTSLSILEKDYDDAIRCKGELDERVFINDEDXXXXXXXXXXXAINVTGT- 354
           ++DLMEESSL +SL+ILE DYD   R KGELDER+FIN++D           +    G  
Sbjct: 314 FKDLMEESSLASSLNILENDYDQMTRNKGELDERLFINEDDSLLASGSLSGGSSVSAGGV 373

Query: 355 KRKFDQMSSPTKTITSPLSCHQSPASHANGIFGSTNPKMAATPVSTAMTTAKWLRTVISP 414
           KRK+D M SP KTITSPLS  +SPASHANGI GS N K+AATPVSTAMTTAKWLRTVISP
Sbjct: 374 KRKYDLMMSPAKTITSPLSPQRSPASHANGIPGSANSKIAATPVSTAMTTAKWLRTVISP 433

Query: 415 LPSKPSAQLERFLASCDRDVTNDVIRRAQIMLEAIFPSSALGERCVTGSLQSTKLMDNIW 474
           LPSKPS +LERFL SCDRD+T++V+RRAQI+L+AIFPSS LG+RCVTGSLQS  LMDNIW
Sbjct: 434 LPSKPSQELERFLTSCDRDITSEVVRRAQIILQAIFPSSPLGDRCVTGSLQSANLMDNIW 493

Query: 475 AEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSAELVLATHKTV 534
           AEQRRLEA+KLYYR+L  MC AEAQIL   NLTSLLTNERFHRCMLACSAELVLATHKTV
Sbjct: 494 AEQRRLEAMKLYYRLLATMCRAEAQIL-GNNLTSLLTNERFHRCMLACSAELVLATHKTV 552

Query: 535 TMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMY 594
           TMLFPAVLERTGITAFDLSKVIESFIR+EESLPRELRRHLNSLEERLLES+VWEKGSSMY
Sbjct: 553 TMLFPAVLERTGITAFDLSKVIESFIRYEESLPRELRRHLNSLEERLLESLVWEKGSSMY 612

Query: 595 NSLTVARPSLSAEINRLGLLAEPMPSLDAIAMHINFXXXXXXXXXXXQKHELCPGQNGDI 654
           NSL VARP+LSAEINRLG+LAEPMPSLD IAM INF            K E  P QNGD+
Sbjct: 613 NSLAVARPALSAEINRLGMLAEPMPSLDEIAMQINFSCGGLPPVPSLPKPETLPAQNGDM 672

Query: 655 RSPKRPCPDYRSVLVERNSFTSPVKDRLLAFSNLKSK-LPPPLQSAFASPTRPNPGGGGE 713
           RSPKR C + R+VLVERNSFTSPVKDRLL  SNLKSK LPPPLQSAFASPT+PNPGGGGE
Sbjct: 673 RSPKRLCTENRNVLVERNSFTSPVKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGE 732

Query: 714 TCAETGINVFFSKVI 728
           TCAETGI+VFFSK++
Sbjct: 733 TCAETGISVFFSKIV 747


>IMGA|Medtr2g013880.1 retinoblastoma-related protein, putative
           chr02_pseudomolecule_IMGAG_V3 3320624-3322026 H
           EGN_Mt090430 20090702
          Length = 157

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/119 (54%), Positives = 82/119 (68%), Gaps = 2/119 (1%)

Query: 55  NISSIGNGTRLSEKXXXXXXXXXXXXGLTLCQILRCAKLNIVDFFKELPQYVVKAGPILS 114
           N +S   G  L++K            GLTLC+ILR  KLNI DFFKELPQ+VVKAGPILS
Sbjct: 18  NQTSSNYGLTLTQKNEESEKDEIENTGLTLCRILRTTKLNIADFFKELPQFVVKAGPILS 77

Query: 115 NMYGADWENRLEAKELQANFVHLSILSRHYKRAYRELFLTSDANVDKQSAVSSETAYLS 173
           N + +DWEN+LEAKE+ AN +HL ILS +YKRA+ E F+++DANV+    +   T YLS
Sbjct: 78  NRFSSDWENKLEAKEMHANTIHLKILSVYYKRAFEEFFVSTDANVEISRLLP--TVYLS 134


>IMGA|Medtr3g013710.1 retinoblastoma-related protein, putative
           chr03_pseudomolecule_IMGAG_V3 2668584-2668134 H
           EGN_Mt090430 20090702
          Length = 104

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 40/68 (58%), Positives = 55/68 (80%), Gaps = 7/68 (10%)

Query: 141 SRHYKRAYRELFLTSDANVDKQSAVSSETAYLSEYHRFGWLLFLALRVHAFSRFKDLVTC 200
           +R+YKR + E F+++DANV+ +S+V++    +SE HRFGWLLF    VHAFSRFKDLVTC
Sbjct: 42  ARYYKRVFEEFFVSTDANVENKSSVTNR---ISECHRFGWLLF----VHAFSRFKDLVTC 94

Query: 201 TNGLVSVL 208
           TNGL+S++
Sbjct: 95  TNGLISIM 102