Jatropha Genome Database

JcCA0072641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0072641.10 + phase: 0 /partial
         (127 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g121420.1 Zinc finger, GATA-type; ZIM; CCT chr04_pseu...    62   7e-11
IMGA|Medtr4g121280.1 Zinc finger, GATA-type; ZIM; CCT chr04_pseu...    62   7e-11

>IMGA|Medtr4g121420.1 Zinc finger, GATA-type; ZIM; CCT
           chr04_pseudomolecule_IMGAG_V3 28466807-28470502 H
           EGN_Mt090430 20090702
          Length = 334

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 11/122 (9%)

Query: 7   GTLRDLTKGGKQISFDQNEMGNIKPSTLERENPYANRDXXXXXXXXXXXXLDSDNSVRPN 66
           GTLRDL K G+ I+F+Q E+     ST + EN  A +D            +D+  S  P 
Sbjct: 212 GTLRDLGKAGR-IAFEQTELDF---STTDPENSCAAQDKKESPHATKPLPMDARQS--PE 265

Query: 67  ---EQELLETDETPTNPFPMHLENSSVNINDEDLQDTLDDLGNVSSSEFEIPGNFDDQVD 123
              EQ +LE  E  T+   + +EN++++++++D  +T+ D  + S +EFEIP  FDDQV+
Sbjct: 266 MIIEQYMLEAAEAVTDNLSIQVENNALDLHEQD--NTMADFVDASGTEFEIPLCFDDQVN 323

Query: 124 ID 125
           ID
Sbjct: 324 ID 325


>IMGA|Medtr4g121280.1 Zinc finger, GATA-type; ZIM; CCT
           chr04_pseudomolecule_IMGAG_V3 28392374-28396069 H
           EGN_Mt090430 20090702
          Length = 334

 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/122 (36%), Positives = 70/122 (57%), Gaps = 11/122 (9%)

Query: 7   GTLRDLTKGGKQISFDQNEMGNIKPSTLERENPYANRDXXXXXXXXXXXXLDSDNSVRPN 66
           GTLRDL K G+ I+F+Q E+     ST + EN  A +D            +D+  S  P 
Sbjct: 212 GTLRDLGKAGR-IAFEQTELDF---STTDPENSCAAQDKKESPHATKPLPMDARQS--PE 265

Query: 67  ---EQELLETDETPTNPFPMHLENSSVNINDEDLQDTLDDLGNVSSSEFEIPGNFDDQVD 123
              EQ +LE  E  T+   + +EN++++++++D  +T+ D  + S +EFEIP  FDDQV+
Sbjct: 266 MIIEQYMLEAAEAVTDNLSIQVENNALDLHEQD--NTMADFVDASGTEFEIPLCFDDQVN 323

Query: 124 ID 125
           ID
Sbjct: 324 ID 325