Jatropha Genome Database

JcCA0071981.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071981.10 + phase: 0 /pseudo/partial
         (250 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g089540.1 Ribosomal protein L10; Ribosomal protein 60...   291   3e-79
IMGA|Medtr3g135890.1 Ribosomal protein L10; Ribosomal protein 60...   289   1e-78

>IMGA|Medtr5g089540.1 Ribosomal protein L10; Ribosomal protein 60S
           chr05_pseudomolecule_IMGAG_V3 34824226-34821326 F
           EGN_Mt090430 20090702
          Length = 323

 Score =  291 bits (744), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 141/169 (83%), Positives = 160/169 (94%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPARVGL+APIDVVVPPG TGLDPS TSFFQ LNIPTKINKG+VEI+T V+LIKKG+K
Sbjct: 110 VGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSE+ALLAKL IRPFSYGL+V SVYDNGSVF+PEVLDLTEDDLV +F  GVSMVTSLS
Sbjct: 170 VGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFNPEVLDLTEDDLVAKFAIGVSMVTSLS 229

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           L+IS+PTLAAAPHMF+NAYKNVL+V+VATEY+FP+A++VKEFL+DPSKF
Sbjct: 230 LAISYPTLAAAPHMFVNAYKNVLAVAVATEYSFPEADKVKEFLKDPSKF 278


>IMGA|Medtr3g135890.1 Ribosomal protein L10; Ribosomal protein 60S
           chr03_pseudomolecule_IMGAG_V3 34138775-34136217 F
           EGN_Mt090430 20090702
          Length = 323

 Score =  289 bits (739), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 140/169 (82%), Positives = 159/169 (94%)

Query: 41  VGAPARVGLIAPIDVVVPPGPTGLDPSMTSFFQALNIPTKINKGSVEIVTAVDLIKKGEK 100
           VGAPARVGL+APIDVVVPPG TGLDPS TSFFQ LNIPTKINKG+VEI+T V+LIKKG+K
Sbjct: 110 VGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDK 169

Query: 101 VGSSESALLAKLQIRPFSYGLIVFSVYDNGSVFSPEVLDLTEDDLVERFVNGVSMVTSLS 160
           VGSSE+ALLAKL IRPFSYGL+V SVYDNGSVFSPEVLDLTEDDLV +F  GVSMVTSLS
Sbjct: 170 VGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLVAKFAIGVSMVTSLS 229

Query: 161 LSISFPTLAAAPHMFLNAYKNVLSVSVATEYTFPQAEQVKEFLEDPSKF 209
           L+IS+PTLAAAPHMF+NAYKNVL+ +VATEY+FP+A++VKE+L+DPSKF
Sbjct: 230 LAISYPTLAAAPHMFVNAYKNVLAFAVATEYSFPEADKVKEYLKDPSKF 278