Jatropha Genome Database

JcCA0071791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071791.10 - phase: 0 /pseudo
         (411 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g134220.1 Snf7 chr07_pseudomolecule_IMGAG_V3 31634844...   347   7e-96

>IMGA|Medtr7g134220.1 Snf7 chr07_pseudomolecule_IMGAG_V3
           31634844-31630396 H EGN_Mt090430 20090702
          Length = 429

 Score =  347 bits (890), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 179/346 (51%), Positives = 239/346 (69%), Gaps = 22/346 (6%)

Query: 6   VREFIKKEVPDWDDEVIATARFKAFSGQRSDWESKYLFWRDLILKVARHLGHLAIRPSQV 65
           V++FI KEVPDW+DEVIA ARFKAFSGQRSDW+  ++FWR+LI+K+A H G L I+PSQV
Sbjct: 5   VKDFIAKEVPDWNDEVIAVARFKAFSGQRSDWQPNFIFWRNLIIKIATHFGFLLIKPSQV 64

Query: 66  KNEWFNRGGLTPLCLDHVLFIMYSEGDIIRSVDLVDPRNGGLSQFFRKVRNLVVRSTTSP 125
           KN+WFNRGGLTPLC+D VL +MY+EGDI R+ DLVDP  G  SQ  RK+ NL++R  T P
Sbjct: 65  KNDWFNRGGLTPLCIDDVLSLMYNEGDITRTGDLVDPTRGRFSQLVRKMTNLIIRPAT-P 123

Query: 126 EVMLEDCVILTVLLREKATEVI-----------------KFYLKVIGHLHALLLXRSFRT 168
           ++M E+ V+L  +L++KA EV+                 KF     G   A ++ R    
Sbjct: 124 DIMAEESVVLIPMLKDKAAEVVKHLSESHWNSSCIITMKKFQEICGGPDEASVMLRYLSG 183

Query: 169 CVEHQ----MKHLQFXVIYLDSGKHAISRFIRRNXXSLHLIWTTEKLQKQVDVIDQRYEI 224
           C   Q    +K+     + +     A+S     +   L+LIWT EKLQ+Q+DVID+R E+
Sbjct: 184 CGTTQYLSVLKNEFVEGVKISLSAAALSGASNLDCDVLYLIWTIEKLQQQLDVIDRRCEL 243

Query: 225 SRKLALASLKSGNKKMALRHAREMKLASENREKCTSLLNRVDGVLNIIMNAESTKKVTEA 284
           SRK A+ASL SGN+K+ALR+ARE+KL +++REKC+SLLNRV+ V  ++++AESTK V+EA
Sbjct: 244 SRKSAVASLHSGNRKLALRYARELKLVTQSREKCSSLLNRVEEVHGVVVDAESTKTVSEA 303

Query: 285 IQIGAQAMKQNKITXXXXXXXXXXXXXSIDSQKQVEKALESTPSYT 330
           +QIGA+A+K+NKI+             SIDSQK+VEKALE TPSYT
Sbjct: 304 MQIGARAIKENKISVEDVDICLRDLQESIDSQKEVEKALEQTPSYT 349