Jatropha Genome Database

JcCA0071111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0071111.10 - phase: 0 /partial/short
         (46 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g087350.1 Aconitate hydratase, N-terminal; ; chr01_ps...    52   8e-08
IMGA|Medtr1g065760.1 Cis-homoaconitase; ; ; chr01_pseudomolecule...    50   4e-07

>IMGA|Medtr1g087350.1 Aconitate hydratase, N-terminal; ;
          chr01_pseudomolecule_IMGAG_V3 17586332-17579961 H
          EGN_Mt090430 20090702
          Length = 466

 Score = 51.6 bits (122), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/49 (57%), Positives = 32/49 (65%), Gaps = 3/49 (6%)

Query: 1  MAMTLKILARAAEKTQLIPGENDWDNVDDPL---HFFPGAFGIFKREFG 46
          M  T KILARA+EK ++ PGEN W NVD  +      PG  GIFKREFG
Sbjct: 17 MTTTEKILARASEKPEVKPGENAWVNVDVLMINDITCPGVSGIFKREFG 65


>IMGA|Medtr1g065760.1 Cis-homoaconitase; ; ;
           chr01_pseudomolecule_IMGAG_V3 13193763-13202569 E
           EGN_Mt090430 20090702
          Length = 508

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 3/49 (6%)

Query: 1   MAMTLKILARAAEKTQLIPGENDWDNVDDPLHF---FPGAFGIFKREFG 46
           M MT KI+A+A+EK  + PG+N W +VD  +      PG+ GIFK+EFG
Sbjct: 63  MTMTEKIMAKASEKGHVTPGDNIWVDVDVLMTHDVCGPGSIGIFKKEFG 111