Jatropha Genome Database
- JcCA0071061.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0071061.10 - phase: 2 /TE
(1395 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 524 e-148
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 510 e-144
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 503 e-142
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 489 e-138
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 344 2e-94
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 279 8e-75
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 270 4e-72
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 251 2e-66
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 221 2e-57
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 209 8e-54
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 177 3e-44
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 170 5e-42
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 142 1e-33
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 122 8e-28
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 114 2e-25
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 114 3e-25
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 92 2e-18
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 89 2e-17
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 86 2e-16
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 77 5e-14
IMGA|Medtr8g096240.1 hypothetical protein chr08_pseudomolecule_I... 70 1e-11
IMGA|Medtr4g104320.1 hypothetical protein chr04_pseudomolecule_I... 68 4e-11
IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA po... 67 5e-11
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 66 1e-10
IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger, C... 64 4e-10
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 64 4e-10
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 64 4e-10
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 61 3e-09
IMGA|AC233656_7.1 hypothetical protein AC233656.1 25072-25343 H ... 60 1e-08
IMGA|Medtr5g015200.1 Helix-turn-helix, AraC type chr05_pseudomol... 59 1e-08
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 59 2e-08
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 58 3e-08
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 58 3e-08
IMGA|Medtr1g102700.1 hypothetical protein chr01_pseudomolecule_I... 58 4e-08
IMGA|Medtr7g116810.1 hypothetical protein chr07_pseudomolecule_I... 57 5e-08
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 57 9e-08
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 57 9e-08
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 55 2e-07
IMGA|Medtr2g033520.1 hypothetical protein chr02_pseudomolecule_I... 55 2e-07
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 54 4e-07
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 54 4e-07
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 54 6e-07
IMGA|Medtr8g043360.1 Copia protein, related chr08_pseudomolecule... 54 7e-07
IMGA|Medtr5g086560.1 Immunoglobulin/major histocompatibility com... 52 2e-06
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 52 2e-06
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 50 6e-06
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 524 bits (1349), Expect = e-148, Method: Compositional matrix adjust.
Identities = 260/540 (48%), Positives = 357/540 (66%), Gaps = 2/540 (0%)
Query: 854 RTCTYPISSFVSYDHLSPSSRCFVSNLDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNG 913
+ TYP+S +++Y+++S + F+S+L + P T V+A H W AM+ E++AL+ G
Sbjct: 707 HSTTYPLSHYINYNNISTNHASFISSLQTTPEPTTYVEASKHDCWNKAMQAELLALEKTG 766
Query: 914 TWDLVPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGLDYSDTFSPVAKL 973
TWD+V L A K IGC+W++ VK N DGS+ R KARLVAKGY+QI GLDY +T+SPVAKL
Sbjct: 767 TWDIVDLPAYVKPIGCRWIYKVKHNADGSIERYKARLVAKGYTQIEGLDYFETYSPVAKL 826
Query: 974 SSVRLFISLAATFDWPLHQLDVKNAFLYGDLQEEVYMEQPPGFVAQGELGKVCKLRKSLY 1033
++VRL I+LA+ +W LHQLDV NAFL+G+LQE+VYM PPG + + +VCKL+KSLY
Sbjct: 827 TTVRLVIALASIHNWHLHQLDVNNAFLHGELQEDVYMILPPG-INIAKPHQVCKLKKSLY 885
Query: 1034 GLKQSPRAWFGRFCNVVHQFGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTGSDSAGI 1093
GLKQ+ R W+ + +V+ Q +++SDHS+F + ++ G+
Sbjct: 886 GLKQASRQWYEKLTSVLIQQHYIQASSDHSLFIKKSSDSFTILLVYVDDIILAGTSLLEF 945
Query: 1094 TSLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLGAKPCSAP 1153
++KS L T F+ KDLG LKYFLGIEV+ K GI L QRKY LDLL ++G +G+KP S P
Sbjct: 946 QNIKSILDTSFKIKDLGQLKYFLGIEVAHSKLGISLYQRKYCLDLLHDSGHIGSKPISTP 1005
Query: 1154 MTPNLQLSIGGEL-FDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWEAL 1212
P+ +L +DD YRRLVG+L YL TRPDI + LSQF+S+PT+ H A
Sbjct: 1006 SDPSTKLHHDTSTPYDDIPAYRRLVGRLLYLNNTRPDITFITQQLSQFLSNPTIAHHNAA 1065
Query: 1213 GQILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGNLISWRSK 1272
+ L YLK PG+GL + + L ++ FSDADWAG R+S++G C F+G +LISWR+K
Sbjct: 1066 LRTLRYLKSCPGKGLFFPRNSSLTLQGFSDADWAGCLDTRKSVTGQCFFLGNSLISWRTK 1125
Query: 1273 KQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVF 1332
KQ YRA+A + CE+ W+ LL ++ S P L+CDNQ+ALHIA+NPVF
Sbjct: 1126 KQTTVSRSSSEAEYRALASATCEIQWLLYLLNDLHITCSKPPVLYCDNQSALHIAANPVF 1185
Query: 1333 HERTKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKALNGPRVDYLCNKLGMINIY 1392
HERTKH+EIDC +REK+Q GV+ V + +Q+ D FTKAL L +KLG+I+IY
Sbjct: 1186 HERTKHLEIDCHIVREKLQAGVLKLLPVSSQDQIADFFTKALLPKTFSLLLSKLGLIDIY 1245
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 61/114 (53%), Gaps = 8/114 (7%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVL---FPSKLLFPVKPRIFGCTCFVRDVR 692
P TFW+ AV A FLINR+ + +L+ PY VL PS LF ++FGC C+ ++
Sbjct: 517 PPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLF----KVFGCLCYASTLQ 572
Query: 693 PQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFENT-PFFPSP 745
+KL +++ + IFLGY KGY F IS V+F E P+ +P
Sbjct: 573 NHRTKLQSRARKSIFLGYQSGYKGYVLFDLTSREIFISRHVSFHETILPYHKNP 626
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 510 bits (1314), Expect = e-144, Method: Compositional matrix adjust.
Identities = 265/539 (49%), Positives = 349/539 (64%), Gaps = 2/539 (0%)
Query: 857 TYPISSFVSYDHLSPSSRCFVSNLDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWD 916
TYPI+ +S+ HLS S FV +L + PK+ +A W AM+ E+ AL+ GTW
Sbjct: 864 TYPITHSLSHHHLSNSRSFFVMSLHTQPEPKSYAEASKLDCWKHAMQVELQALEKTGTWK 923
Query: 917 LVPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGLDYSDTFSPVAKLSSV 976
LV L K IGC+W++ VK + DG+V R KARLVAKGY+QI GLDY DT+SPVAKL++V
Sbjct: 924 LVDLPPNVKPIGCRWIYKVKFHADGTVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTV 983
Query: 977 RLFISLAATFDWPLHQLDVKNAFLYGDLQEEVYMEQPPGFVAQGELGKVCKLRKSLYGLK 1036
RL I+L++ +W LHQLDV NAFL+GDLQE+VYM PPG + +L +VCKL KSLYGLK
Sbjct: 984 RLVIALSSINNWHLHQLDVNNAFLHGDLQEDVYMMVPPG-IKSSKLNQVCKLTKSLYGLK 1042
Query: 1037 QSPRAWFGRFCNVVHQFGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTGSDSAGITSL 1096
Q+ R W+ + +V+ ++TSD+S+F + T+T G+ + + +
Sbjct: 1043 QASRKWYEKLTSVLFDQHYTQATSDYSLFVKKTSTSFTVLLVYVDDIILAGNSISEFSHI 1102
Query: 1097 KSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLGAKPCSAPMTP 1156
KS L + F+ KDLG LKYFLGIEV+ K GI L QRKY LDLL + G LG+KP S P
Sbjct: 1103 KSILDSLFKIKDLGQLKYFLGIEVAHSKLGISLCQRKYCLDLLADIGSLGSKPISTPSDS 1162
Query: 1157 NLQLSIGGEL-FDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWEALGQI 1215
+++L + F+D RRLVG+L YL TRPDI + LSQF+S PT H A ++
Sbjct: 1163 SIKLHLDSSSPFEDVPACRRLVGRLLYLNNTRPDITFITQQLSQFLSQPTQAHHSAALRV 1222
Query: 1216 LCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGNLISWRSKKQN 1275
L YLK PG+GL + LN++ FSDADWAG RRSISG C F+G +LISWR+KKQ
Sbjct: 1223 LKYLKSCPGKGLFFPRSSSLNLQGFSDADWAGCIDTRRSISGQCFFLGNSLISWRTKKQI 1282
Query: 1276 XXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFHER 1335
YRA+A + CEL WI LL+++ L+CDNQ+A+HIA+NPVFHER
Sbjct: 1283 TVSKSSSEAEYRALASATCELQWILYLLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHER 1342
Query: 1336 TKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKALNGPRVDYLCNKLGMINIYAP 1394
TKH+EIDC IR+K+Q GV+ V + +Q+ D FTKAL + L +KLG+INIY P
Sbjct: 1343 TKHLEIDCHLIRDKLQSGVLKLLTVSSQDQVADFFTKALLPKPFNILLSKLGLINIYQP 1401
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVL---FPSKLLFPVKPRIFGCTCFVRDVR 692
P +W A+ A FLINR+P+ LN PY VL P LF ++FGC C+ ++
Sbjct: 677 PPAYWCYAIQHAVFLINRVPTPTLNNQSPYFVLHHKLPDSSLF----KVFGCLCYASTLQ 732
Query: 693 PQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFENTPFFPSPIYKSEGE 752
+KL ++ + IF+GY KG+ + IS VTF EN F P P S
Sbjct: 733 SHTTKLKHRARKSIFIGYQSGYKGFTLYDLHSREIFISRHVTFHEN--FLPYPHTSSSTS 790
Query: 753 DD 754
D
Sbjct: 791 PD 792
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 503 bits (1296), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/541 (47%), Positives = 349/541 (64%), Gaps = 2/541 (0%)
Query: 855 TCTYPISSFVSYDHLSPSSRCFVSNLDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGT 914
+ TYPIS ++S++ LS +V +L + + PKT +A H W AM+ E+ AL+ GT
Sbjct: 836 STTYPISHYLSHNKLSSHHSSYVLSLHTHNEPKTYAEANKHECWQKAMQVELQALEQTGT 895
Query: 915 WDLVPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGLDYSDTFSPVAKLS 974
W+ V L K IGC+WVF +K + DGS+ R KARLVAKGY+Q+ GLDY DTFSPVAKL+
Sbjct: 896 WNFVDLPPNVKPIGCRWVFKIKRHADGSIERYKARLVAKGYTQVEGLDYFDTFSPVAKLT 955
Query: 975 SVRLFISLAATFDWPLHQLDVKNAFLYGDLQEEVYMEQPPGFVAQGELGKVCKLRKSLYG 1034
+VRL I+LA+ W LHQLDV NAFL+GDLQE VYM PPG A+ VCKL KSLYG
Sbjct: 956 TVRLIIALASINHWHLHQLDVNNAFLHGDLQENVYMTLPPGISAKHS-NTVCKLNKSLYG 1014
Query: 1035 LKQSPRAWFGRFCNVVHQFGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTGSDSAGIT 1094
LKQ+ R W+ + +++ + ++ SDHS+F + T T G
Sbjct: 1015 LKQASRKWYDKLTSILLKHQYTQAHSDHSLFTKKTGTSYTILLVYVDDIILAGDSLEEFQ 1074
Query: 1095 SLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLGAKPCSAPM 1154
+KS L T F+ KDLG LK+FLG+EV+ + GI L Q+KY LDLL ++G +G+KP S P
Sbjct: 1075 YIKSILDTLFKIKDLGQLKFFLGLEVAHSQLGISLCQKKYCLDLLADSGTIGSKPASTPS 1134
Query: 1155 TPNLQLSIGGEL-FDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWEALG 1213
P+L+L G L ++D YRRL+G+L YL TRPDI Y LSQF+S+PT H A
Sbjct: 1135 DPSLKLHKDGALPYEDIPSYRRLIGRLLYLNTTRPDITYITQQLSQFLSAPTHTHHSAAL 1194
Query: 1214 QILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGNLISWRSKK 1273
++L YLK PG+GL + + L ++ +SDADWAG RRSISG C F+G +LISWR+KK
Sbjct: 1195 RVLRYLKNCPGKGLFFPRNSPLQLQGYSDADWAGCLDTRRSISGQCFFLGNSLISWRTKK 1254
Query: 1274 QNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFH 1333
Q YRA+A + CEL W+ LL+++ + L+CDNQ+ALHIA+NPVFH
Sbjct: 1255 QVTVSRSSSEAEYRALASATCELQWLIYLLQDLHVTCTKLPVLFCDNQSALHIAANPVFH 1314
Query: 1334 ERTKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKALNGPRVDYLCNKLGMINIYA 1393
ERTKH+EIDC +REK+ G++ V + EQ+ D FTK+L+ + L +KL +++IY
Sbjct: 1315 ERTKHLEIDCHIVREKLHSGILKLLPVSSKEQVADFFTKSLHPQPFNLLLSKLSLLDIYQ 1374
Query: 1394 P 1394
P
Sbjct: 1375 P 1375
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVLFPSKLLFPVKPRIFGCTCFVRDVRPQV 695
P +FW+ A+ A FLINR+P+ +L+ PY VLF + D++
Sbjct: 671 PPSFWSYAILHAVFLINRVPTHVLHNQSPYHVLFHK----------------LPDIQLFK 714
Query: 696 SKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFEN 738
SKL ++ + +FLGY KGY F +S V F EN
Sbjct: 715 SKLQPRARKSLFLGYKSGYKGYHLFDLSTREIFVSRHVIFHEN 757
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/536 (47%), Positives = 341/536 (63%), Gaps = 2/536 (0%)
Query: 858 YPISSFVSYDHLSPSSRCFVSNLDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDL 917
YPIS ++SY++LS S F +LDS + P T +A W AM+ E+ AL+ GTW L
Sbjct: 856 YPISHYLSYNNLSSSHCAFALSLDSHTEPTTYAEASKFDCWKQAMQVELSALENTGTWKL 915
Query: 918 VPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGLDYSDTFSPVAKLSSVR 977
V L K I C+W++ +K + DGS+ R KARLVAKGY+QI GLDY DT+SPVAKL++VR
Sbjct: 916 VDLPPNVKPIVCRWIYKIKHHADGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVR 975
Query: 978 LFISLAATFDWPLHQLDVKNAFLYGDLQEEVYMEQPPGFVAQGELGKVCKLRKSLYGLKQ 1037
I+LA +W +HQLDV NAFL+GDLQE+VYM P G + + +VCKL KSLYGLKQ
Sbjct: 976 TIIALAYMNNWHIHQLDVNNAFLHGDLQEDVYMIVPQG-ITPSKSNQVCKLIKSLYGLKQ 1034
Query: 1038 SPRAWFGRFCNVVHQFGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTGSDSAGITSLK 1097
+ R W+ + +++ +STSDHS+F + T T TG+ + +K
Sbjct: 1035 ASRKWYEKLTSLLVHHHYLQSTSDHSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIK 1094
Query: 1098 SFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLGAKPCSAPMTPN 1157
+ L + + KDLG LKYFLG+EV+ +GI L QRKY LDLL + G L AKP S P P+
Sbjct: 1095 AILHSALEIKDLGQLKYFLGLEVAHSSQGISLCQRKYCLDLLTDIGFLAAKPASTPSDPS 1154
Query: 1158 LQL-SIGGELFDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWEALGQIL 1216
+L + GG F D YRRL+G+L YLT TRP I ++ LSQF++SPT H+ A +IL
Sbjct: 1155 CKLHADGGPPFSDIPSYRRLIGRLIYLTNTRPYITFATQQLSQFLNSPTEKHYIAATRIL 1214
Query: 1217 CYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGNLISWRSKKQNX 1276
YLK +PG+GL + L + +SDADWAG RRSISG C F+G +LISW++KKQ
Sbjct: 1215 RYLKKSPGQGLFFPRDSSLFLSGYSDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLT 1274
Query: 1277 XXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFHERT 1336
YRA+ + CEL W+ LL ++ + L+CDNQ+ALHIA+NPVFHERT
Sbjct: 1275 VSRSSSEAEYRALGAATCELQWLLYLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERT 1334
Query: 1337 KHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKALNGPRVDYLCNKLGMINIY 1392
KH+EIDC +REK+Q ++ V +++QL D FTK L L KLGM+NIY
Sbjct: 1335 KHLEIDCHLVREKLQACIMKLLPVTSADQLADFFTKPLLPQPFHTLLFKLGMLNIY 1390
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 55/112 (49%), Gaps = 7/112 (6%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVL---FPSKLLFPVKPRIFGCTCFVRDVR 692
P ++W+ A+ A F+INR+ S L+ PY +L P F ++FG C+ ++
Sbjct: 660 PSSYWSYALLHAIFIINRVTSPTLHNKSPYQLLHGTIPDVQTF----KVFGSLCYSTTLQ 715
Query: 693 PQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFENTPFFPS 744
+KL ++ + +FLGY+ KGY IS V F E+ +P+
Sbjct: 716 SHRTKLSARARKTVFLGYAVGYKGYVLLDIHTREIHISRHVQFHEHILPYPT 767
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 344 bits (883), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 206/541 (38%), Positives = 283/541 (52%), Gaps = 19/541 (3%)
Query: 696 SKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFENTPFFPSPIYKSEGEDDE 755
+K D K++ +F+GY + KGY+ + + +S DV F E FP + K +
Sbjct: 155 TKFDPKTIPHVFVGYPYATKGYKVLNLSTQKIHVSRDVIFHET--IFPFAMSKDPTHFPK 212
Query: 756 LLVY--AIQQFPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFEQVYSRRPGTL 813
+ ++ +P+S RR L
Sbjct: 213 FPFHCVSLHDYPTSYDDQDYSSKETTTSPTHITPENSTSPTHITPENSTSIPQLRRSQRL 272
Query: 814 DSLPLSTALTE--DPVPSTQPEPVPSTAPSDLDLPIALRKGKRTCTYPISSFVSYDHLSP 871
P T LT+ VPS+ S P LP+ + + +VS D S
Sbjct: 273 HKTP--TYLTDYVHNVPSSTVSN--SQPPQPHSLPL-------NALFTLKHYVSPDVFSF 321
Query: 872 SSRCFVSNLDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLLAGKKAIGCKW 931
S+ F+ N+ P + +A P W AM +E +AL N TW L L KK++GC+W
Sbjct: 322 DSQSFIMNISHDCEPNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRW 381
Query: 932 VFTVKMNPDGSVARLKARLVAKGYSQIYGLDYSDTFSPVAKLSSVRLFISLAATFDWPLH 991
V+ VK DGSV R KARLV KGY+Q +G+DY++TFSPV K+++VR I AA W +H
Sbjct: 382 VYKVKHKADGSVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIH 441
Query: 992 QLDVKNAFLYGDLQEEVYMEQPPGFVAQGELGKVCKLRKSLYGLKQSPRAWFGRFCNVVH 1051
QLDV NAFL+GDL EEVYM+ PPG +A VCKL KSLYGLKQ+ R W+ + +H
Sbjct: 442 QLDVNNAFLHGDLHEEVYMDIPPG-LATPHKDLVCKLNKSLYGLKQASRQWYEKLTEALH 500
Query: 1052 QFGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTGSDSAGITSLKSFLQTQFQTKDLGL 1111
G + S D+S+F++ TG+D+ I LK FL QF+ KDLG
Sbjct: 501 TRGYEHSPHDYSLFYKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGR 560
Query: 1112 LKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLGAKPCSAPMTPNLQL-SIGGELFDDP 1170
L YFLG+EV GI +SQRK+VLDLLKE P S+P+ PN++L S G++ DDP
Sbjct: 561 LHYFLGLEVLYKDDGILVSQRKFVLDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDP 620
Query: 1171 EMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWEALGQILCYLKGNPGRGLLYS 1230
YR+L+GKLN+LT TR D+AY V +LSQ+M P H A +L YLK +P G+ S
Sbjct: 621 TYYRKLIGKLNFLTHTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLKKDPTLGVFMS 680
Query: 1231 N 1231
+
Sbjct: 681 S 681
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 279 bits (713), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 139/292 (47%), Positives = 188/292 (64%), Gaps = 2/292 (0%)
Query: 902 MKEEMVALDTNGTWDLVPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGL 961
M+ E+ AL+ GTW +V L K IGC+W+F +K N DGS+ R KARLVAKGY+QI GL
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 962 DYSDTFSPVAKLSSVRLFISLAATFDWPLHQLDVKNAFLYGDLQEEVYMEQPPGFVAQGE 1021
DY DT+SPVAKL++VR I+LA+ W LHQ DV NAFL+G+LQE+VYM PPG V
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPG-VPHSH 119
Query: 1022 LGKVCKLRKSLYGLKQSPRAWFGRFCNVVHQFGMQKSTSDHSVFFRSTNTGXXXXXXXXX 1081
+VCKL KSLYGL+Q+ W+ + N++ G +++ SD S+F + T++
Sbjct: 120 QDEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVD 179
Query: 1082 XXXXTGSDSAGITSLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKE 1141
G + ++K L F+ KD+G LKYFLG+EV+ K GI L QRKY LDLL++
Sbjct: 180 DVILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLED 239
Query: 1142 TGKLGAKPCSAPMTPNLQL-SIGGELFDDPEMYRRLVGKLNYLTVTRPDIAY 1192
+G G+KP + P P+++L + F D YRRL+G+L YL TRPDI Y
Sbjct: 240 SGLTGSKPMNTPSDPSIKLHNDSAPSFPDIPAYRRLIGRLLYLNTTRPDITY 291
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 270 bits (690), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 136/310 (43%), Positives = 187/310 (60%), Gaps = 15/310 (4%)
Query: 1087 GSDSAGITSLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLG 1146
G+D+ IT+ K +L+ F KDLG LKYFLG+E++R G+F+ QRKY LD+L E L
Sbjct: 14 GNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRKYTLDILDECKMLD 73
Query: 1147 AKPCSAPMTPNLQLSIG-GELFDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPT 1205
KP + PM N +L + G DP YRRL+ +L YLT+ P+I YSV +L+
Sbjct: 74 CKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEITYSVHILTM------ 127
Query: 1206 VIHWEALGQILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGN 1265
++L YLK +PG+G++ L + + D+DWA + RRS SGY + +G
Sbjct: 128 --------RVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRRSTSGYLMKLGSA 179
Query: 1266 LISWRSKKQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALH 1325
ISW++KKQ+ YRAM Q+ E+IW+R LL + P L CDNQAA+H
Sbjct: 180 PISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSPTVLLCDNQAAMH 239
Query: 1326 IASNPVFHERTKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKALNGPRVDYLCNK 1385
+A+NPV+HERTKHIE+DC FIR +Q+G IST +V T +Q DIFTKAL + L K
Sbjct: 240 LAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTKALGAKQFQELTFK 299
Query: 1386 LGMINIYAPT 1395
LG+ + PT
Sbjct: 300 LGVHYPHTPT 309
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H fold
chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 137/361 (37%), Positives = 196/361 (54%), Gaps = 35/361 (9%)
Query: 1035 LKQSPRAWFGRFCNVVHQFGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTGSDSAGIT 1094
++ + R W+ + +++ G +++++DHS+F + + T G+ T
Sbjct: 382 IRLASRKWYEKLASLLVNHGYKQASADHSLFIKHSTTQFTALLVYVDDIILAGNSLDEFT 441
Query: 1095 SLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLGAKPCSAPM 1154
+K+ L F+ KDLG LKYFLG+EV+ K GI L QRKY LDLL +TG L +KP + P
Sbjct: 442 FIKNILHNSFKIKDLGQLKYFLGLEVAHSKLGISLCQRKYGLDLLSDTGLLDSKPVATPS 501
Query: 1155 TPNLQL-SIGGELFDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWEALG 1213
P+++L L+ D YRRLVG+L YL TRPDI + LSQF+S PT H+ A
Sbjct: 502 DPSIKLYHDDSPLYTDIPAYRRLVGRLLYLNATRPDITFITQQLSQFLSKPTQTHYNAAL 561
Query: 1214 QILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGNLISWRSKK 1273
++L YLK PG+GL + I+ +SDADWAG + RRSISG C F+G +LISWR+KK
Sbjct: 562 RVLRYLKTCPGKGLHFPRSSLPYIQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKK 621
Query: 1274 QNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFH 1333
Q YRA+ + SNPVFH
Sbjct: 622 QLTVSRSSSEAEYRALGAA----------------------------------TSNPVFH 647
Query: 1334 ERTKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKALNGPRVDYLCNKLGMINIYA 1393
ERTKH+EIDC +REK+ G++ + + QL D FTK++ + L KLG+++I+
Sbjct: 648 ERTKHLEIDCHIVREKLAAGIMKLLPISSKNQLADCFTKSILPQPFNSLLFKLGLVDIHK 707
Query: 1394 P 1394
P
Sbjct: 708 P 708
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 54/121 (44%), Positives = 80/121 (66%)
Query: 858 YPISSFVSYDHLSPSSRCFVSNLDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDL 917
Y IS++VSY ++S F+ +L + + PKT +A W AM+ E+ AL+ GTW +
Sbjct: 264 YSISNYVSYHNISNPHSHFILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKI 323
Query: 918 VPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGLDYSDTFSPVAKLSSVR 977
+ K IGC+W++ +K N D ++ R KARLVAKGY+Q+ GLDY DT+SPVAK +++R
Sbjct: 324 IDSPPNAKPIGCRWIYKIKHNADDTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIR 383
Query: 978 L 978
L
Sbjct: 384 L 384
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVLF---PSKLLFPVKPRIFGCTCFVRDVR 692
P +FW+ A A FLINR+P+ +L+ PY +L+ P F ++FGC C+ ++
Sbjct: 69 PLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDITTF----KVFGCLCYASSLQ 124
Query: 693 PQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFE 737
+KL+T++ + +FLGY KGY + IS V F E
Sbjct: 125 SHRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHE 169
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 221 bits (562), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 177/547 (32%), Positives = 235/547 (42%), Gaps = 141/547 (25%)
Query: 826 PVPSTQPE-PVPSTAPSDLDLPIA-----LRKGKRTCT------------YPISSFVSYD 867
P+ +T+P P PS + S P+ R RT T PIS+ +SY
Sbjct: 75 PIFTTEPATPDPSISTSQPHAPLVSALTQARHSTRTRTTPAHLQDFVCSALPISASLSYH 134
Query: 868 HLSPSSRCFVSNLDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLLAGKKAI 927
LSPS F + S P + QA S P W AM E+ AL+ GT
Sbjct: 135 PLSPSYCSFTLAISSDIEPSSFKQAQSDPRWQLAMSPELSALEATGT------------- 181
Query: 928 GCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGLDYSDTFSPVAKLSSVRLFISLAATFD 987
W+F +D SP+
Sbjct: 182 ---WIF---------------------------VDPPPNISPIGS--------------K 197
Query: 988 WPLHQLDVKNAFLYGDLQEEVYMEQPPGFVAQGELGKVCKLRKSLYGLKQSPRAWFGRFC 1047
W D N FL+GDLQE+VYM P G V+ G+VCKL KSLYGLKQ+ R WF +
Sbjct: 198 WIFRLNDANNTFLHGDLQEDVYMHPPQG-VSPPRPGQVCKLLKSLYGLKQASRRWFEKLI 256
Query: 1048 NVVHQFGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTGSDSAGITSLKSFLQTQFQTK 1107
+++ G ++++DHS R A TS + L
Sbjct: 257 SLLLTIGFVQASADHSFLIR-----------------------ASPTSFTALL------- 286
Query: 1108 DLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLGAKPCSAPMTPNLQLSIG-GEL 1166
I V+ +GI L QRKY LDLL + G K S P+ L I G
Sbjct: 287 ----------IYVAHSSKGISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPP 336
Query: 1167 FDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWEALGQILCYLKGNPGRG 1226
FDD YR L+G L YLT TRPDI+++ LSQFM+ P+V H +L YL+ PGRG
Sbjct: 337 FDDVLAYRCLIGCLLYLTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRG 396
Query: 1227 LLYSNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGNLISWRSKKQNXXXXXXXXXXY 1286
L + + + FSDADW G RRS+ + + L RS
Sbjct: 397 LFFPRTSEMQLLGFSDADWGGCVDSRRSL-AFQEAIHRFLFFLRS--------------- 440
Query: 1287 RAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRFI 1346
S + R + I + L+CDNQ+ALHIA+NPVF+ERTKH++IDC +
Sbjct: 441 ---GISCFSISHPRTPMAHIRL-----SILYCDNQSALHIAANPVFYERTKHLDIDCHIV 492
Query: 1347 REKIQQG 1353
REK+Q+G
Sbjct: 493 REKVQRG 499
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 209 bits (532), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 147/236 (62%), Gaps = 1/236 (0%)
Query: 1087 GSDSAGITSLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLG 1146
G+ + +KS L + F+ KDLG LKY LG+EV+ K+GI L QRKY LDLL ++G +
Sbjct: 24 GNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHSKQGISLCQRKYCLDLLSDSGTIN 83
Query: 1147 AKPCSAPMTPNLQL-SIGGELFDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPT 1205
+KP S +L+L + ++D YRRL+G+L YL TRPDI + LSQF+S PT
Sbjct: 84 SKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLYLNSTRPDITFITQQLSQFLSKPT 143
Query: 1206 VIHWEALGQILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGN 1265
H A ++L YLK PG+GL + + L+++ FSD DWAG RRSISG C F+G +
Sbjct: 144 QTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSDVDWAGCVDSRRSISGQCFFIGNS 203
Query: 1266 LISWRSKKQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQ 1321
LISWR+KKQ YRA+A + CEL WI LL+++ +SS L+CDNQ
Sbjct: 204 LISWRTKKQTTVSRSSSEAEYRALASATCELQWILYLLKDLNIQSSKLPVLFCDNQ 259
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 89/193 (46%), Positives = 127/193 (65%), Gaps = 9/193 (4%)
Query: 832 PEPVPS-------TAPSDLDLPIALRKGKRTCT--YPISSFVSYDHLSPSSRCFVSNLDS 882
P P+P+ T PS L I K + + IS+FVSY ++S S F+ +L +
Sbjct: 849 PPPLPTRHSSRNKTPPSYLKDFICANKSSASVNSLHSISNFVSYHNISNSHSHFILSLHA 908
Query: 883 VSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDLVPLLAGKKAIGCKWVFTVKMNPDGS 942
+ PK+ +A W AM+ E+ AL+ GTW ++ L + K IGC+W++ VK + DG+
Sbjct: 909 HTEPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKHHADGT 968
Query: 943 VARLKARLVAKGYSQIYGLDYSDTFSPVAKLSSVRLFISLAATFDWPLHQLDVKNAFLYG 1002
+ R KARLVAKGY+Q+ GLDY DT+SPVAK +++RL ++LA+ +W LHQLDV NAFL+G
Sbjct: 969 IERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNNAFLHG 1028
Query: 1003 DLQEEVYMEQPPG 1015
DLQE+VYM+ PPG
Sbjct: 1029 DLQEDVYMDIPPG 1041
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVLF---PSKLLFPVKPRIFGCTCFVRDVR 692
P +FW+ A A FLINR+P+ +L PY +L+ P F ++FGC C+ ++
Sbjct: 688 PLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTF----KVFGCLCYASSLQ 743
Query: 693 PQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFE 737
+KL+T++ + +FLGY KG + IS V F E
Sbjct: 744 SHRTKLETRARKSVFLGYKSGFKGSVLYDLHTREIFISRHVVFHE 788
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 170 bits (430), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 130/449 (28%), Positives = 203/449 (45%), Gaps = 101/449 (22%)
Query: 912 NGTWDLVPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGLDYSDTFSPVA 971
N TW+L+ L GKKAI KWVF +K+NP+G + + KARLVA
Sbjct: 210 NQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKARLVA------------------- 250
Query: 972 KLSSVRLFISLAATFDWPLHQLDVKNAFLYGDLQEEVYMEQPPGFVAQGELGKVCKLRKS 1031
R+F+ K F Y ++ V KL K+
Sbjct: 251 -----RVFLK--------------KEGFDYTEV--------------------VFKLNKA 271
Query: 1032 LYGLKQSPRAWFGRFCNVVHQFGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTGSDSA 1091
LYGLKQ+PRAW R + G +K ++H V+ + GS+
Sbjct: 272 LYGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYVK-------------------GSEG- 311
Query: 1092 GITSLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLG-AKPC 1150
TSL + +E+ R +G+ L+Q KY ++ K+ L
Sbjct: 312 --TSL-----------------LIICLEILRTTKGLILNQTKYDTEIQKKFNMLDFNSSI 352
Query: 1151 SAPMTPNLQLSIGGELFDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWE 1210
+ N+ + DP + RRL+G L YL +R DI+YSV ++S+FMS+P H+
Sbjct: 353 TLAYANNINEVKEEDKGVDPTILRRLIGLLRYLCQSRLDISYSVGIVSKFMSNPLKTHFL 412
Query: 1211 ALGQILCYLKGNPGRGLLY---SNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGNLI 1267
A +I+ Y+ G G+L+ L++ +SDADW K DRR + + + G I
Sbjct: 413 AAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADWCRDKRDRRRTTSFLFMLQGAPI 472
Query: 1268 SWRSKKQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIA 1327
SW SKKQ Y + +AC+ W++ +LE+ K P KL DN+ A+++A
Sbjct: 473 SWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQSMIKLKQPIKLLIDNKYAINLA 532
Query: 1328 SNPVFHERTKHIEIDCRFIREKIQQGVIS 1356
N + H ++KHIE ++R+++ + I+
Sbjct: 533 KNHISHGKSKHIETKFHYLRDQVNKCKIN 561
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 142 bits (358), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 108/182 (59%), Gaps = 17/182 (9%)
Query: 1214 QILCYLKGNPGRGLLYSNHRHLNIECFSDADWA-GSKVDRRSISGYCVFVGGNLISWRSK 1272
++L YLKG PG+GL + L I+ +++ADWA G K RRSIS C F W S
Sbjct: 2 RVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSISEQCFFC------WSSS 55
Query: 1273 KQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVF 1332
+ YRA+A + CEL + LL ++ P L+CDNQ+A++IA+NPVF
Sbjct: 56 EAE----------YRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPVF 105
Query: 1333 HERTKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKALNGPRVDYLCNKLGMINIY 1392
HE TKH+EIDC +REK+Q G+ + + +Q+ D FTK+L + L +KLGM++IY
Sbjct: 106 HECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGMLDIY 165
Query: 1393 AP 1394
P
Sbjct: 166 HP 167
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 122 bits (307), Expect = 8e-28, Method: Composition-based stats.
Identities = 62/142 (43%), Positives = 82/142 (57%), Gaps = 28/142 (19%)
Query: 902 MKEEMVALDTNGTWDLVPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGL 961
M+ E+ AL+ GTW LV L K IGC+W++ +K DGS+ R KARLV KGY+Q+ G
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 962 DYSDTFSPVAKLSSVRLF----------------------------ISLAATFDWPLHQL 993
DY DT+SPVAKL++ RL I+LA+ W +H+L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 994 DVKNAFLYGDLQEEVYMEQPPG 1015
D +AFL+GDLQE+VYM P G
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQG 142
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/241 (34%), Positives = 120/241 (49%), Gaps = 35/241 (14%)
Query: 1086 TGSDSAGITSLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRG-IFLSQRKYVLDLLKETGK 1144
TG+++ + L S L + F KDLG LKYFLGIEV G + ++Q KYV DLL +T
Sbjct: 11 TGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKYVRDLLAKTDM 70
Query: 1145 LGAKPCSAPMTPNLQLSIGGEL-FDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSS 1203
AK +PM +L+LS G F DP + R +V L Y + P
Sbjct: 71 QEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP--------------- 115
Query: 1204 PTVIHWEALGQILCYLKGNPGRGLLYS--NHRHLNIECFSDADWAGSKVDRRSISGYCVF 1261
L +L +LKG GLL L+I + DADW GS D RS+ CVF
Sbjct: 116 --------LSNVLRHLKGTLSWGLLVRPIPTYPLSILAYCDADW-GSDPDDRSVDA-CVF 165
Query: 1262 VGGNLISWRSKKQNXXXXXXXXXXYRAMAQSACELIWIR------QLLEEIGFKSSLPAK 1315
+G NLISW +KKQ Y ++A + EL+WI+ +++++ F S++P +
Sbjct: 166 LGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWIKTYGARLKVIQKKLFVSNVPGQ 225
Query: 1316 L 1316
+
Sbjct: 226 V 226
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 105/193 (54%), Gaps = 16/193 (8%)
Query: 1203 SPTVIHWEALGQILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKV-DRRSISGYCVF 1261
S +V +++ + I+C+LKG +YSN R N+ D + SKV S + +
Sbjct: 189 SNSVRNYKNMEYIICFLKG---LNTIYSNVRTQNL--LMDPLPSISKVYSLVSQQDFNHY 243
Query: 1262 VGGNLISWRSKKQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQ 1321
+S S + YRAMA + CE+ W+ LL++ + PA L+CD+Q
Sbjct: 244 DDSTTVSKSSSE----------AEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQ 293
Query: 1322 AALHIASNPVFHERTKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKALNGPRVDY 1381
+A HIA+N FHERTKHIE+DC +REK+QQ + V +S+QL D+ TK L+
Sbjct: 294 SARHIAANTSFHERTKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSN 353
Query: 1382 LCNKLGMINIYAP 1394
+KLG+ +IY P
Sbjct: 354 FISKLGLKDIYTP 366
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 64/101 (63%)
Query: 858 YPISSFVSYDHLSPSSRCFVSNLDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDL 917
Y IS++VSY ++S F+ +L + + PKT +A W AM+ E+ AL+ GTW +
Sbjct: 357 YSISNYVSYHNISNPHSHFILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKI 416
Query: 918 VPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQI 958
+ K IGC+W++ +K + DG++ R KARLVAKGY+Q+
Sbjct: 417 IDSPPNAKPIGCRWIYKIKHHADGTIERYKARLVAKGYNQL 457
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVLF---PSKLLFPVKPRIFGCTCFVRDVR 692
P +FW+ A A FLINR+ + +L+ PY +L+ P F ++FGC C+ ++
Sbjct: 162 PLSFWSYAFLHAVFLINRITTPVLHNFSPYHLLYDSPPDITTF----KVFGCLCYASSLQ 217
Query: 693 PQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFE 737
++KL+T++ + +FLGY KGY + IS V F E
Sbjct: 218 SHITKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHE 262
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 1086 TGSDSAGITSLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKL 1145
+G DS GI LK FL F+ KDL L YFLG+E +FLSQ KY DL+ + G
Sbjct: 4 SGDDSIGIEELKQFLCHHFEMKDLEPLSYFLGLEALSSNDDLFLSQAKYASDLVSQAGLT 63
Query: 1146 GAKPCSAPMTPNLQLS-IGGELFDDPEMYRRLVGKLNYLTVTRPDIAYSVSVLS 1198
K + PN+Q + G L DD +Y VG L YLT TRP+I+Y V ++S
Sbjct: 64 DCKIEYTRLEPNIQFTPQDGTLLDDATLYWHFVGSLIYLTNTRPNISYFVHLVS 117
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 61/102 (59%)
Query: 1028 LRKSLYGLKQSPRAWFGRFCNVVHQFGMQKSTSDHSVFFRSTNTGXXXXXXXXXXXXXTG 1087
LRKSLYGLKQ+ R W+ + + ++G Q+S +DHS+F S + G
Sbjct: 5 LRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDLVIAG 64
Query: 1088 SDSAGITSLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFL 1129
+D+ IT+ K +L+ F KDLG LKYFLG+E++R G+F+
Sbjct: 65 NDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFM 106
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 77.4 bits (189), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 1287 RAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRFI 1346
+A+AQ+ E WI L++ S P ++CDN +++HI +NPVFHERTKHIEIDC +
Sbjct: 2 QALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVV 61
Query: 1347 REKIQQ 1352
R+KI+
Sbjct: 62 RDKIKH 67
>IMGA|Medtr8g096240.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 21119820-21118370 E
EGN_Mt090430 20090702
Length = 93
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 987 DWPLHQLDVKNAFLYGDLQEEVYMEQPPGFVAQGELGK-VCKLRKSLYGLKQSPRAWFGR 1045
++ LHQLD+K+AF +GD+ E+VY+E PP F+AQG+L V +L K+ Y LKQS RAW +
Sbjct: 26 NYVLHQLDIKHAFQFGDVIEKVYIEPPPRFIAQGDLCDFVYRLYKASYNLKQSLRAWSDK 85
Query: 1046 FCNVVHQF 1053
V+ +F
Sbjct: 86 VSAVLQKF 93
>IMGA|Medtr4g104320.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 22711151-22711574 H
EGN_Mt090430 20090702
Length = 99
Score = 67.8 bits (164), Expect = 4e-11, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 41/140 (29%)
Query: 902 MKEEMVALDTNGTWDLVPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGL 961
M EE+ ++ N T +LV L +KAIG KWV+ +K N +G + +
Sbjct: 1 MLEELSSIKKNKTLELVGLSTDEKAIGVKWVYKLKTNHEGKIVK---------------- 44
Query: 962 DYSDTFSPVAKLSSVRLFISLAATFDWPLHQLDVKNAFLYGDLQEEVYMEQPPGFVAQGE 1021
PL D+K FL G L+E ++++QP G + +
Sbjct: 45 -------------------------KVPLFHFDMKLYFLNGSLEETMFVKQPSGLEIKCK 79
Query: 1022 LGKVCKLRKSLYGLKQSPRA 1041
V KL K LYGLKQ+PRA
Sbjct: 80 EENVYKLHKDLYGLKQAPRA 99
>IMGA|Medtr3g101210.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
24473881-24473486 H EGN_Mt090430 20090702
Length = 131
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 1118 IEVSRCKRGIFLSQRKYVLDLLKETGKLGAKPCSAPMTPNLQLSIGGELFD-DPEMYRRL 1176
+E+ +G+ L Q Y ++LK+ L N+ + E DP M+RRL
Sbjct: 1 MEILINSKGLILHQTDYASEILKKFNMLDCNSTITHADANIIYEVKEEDEGVDPTMFRRL 60
Query: 1177 VGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWEALGQILCYLKGNPGRGLLY---SNHR 1233
+G L YL +RP I+Y V ++S+FMS+P ++ + +IL Y+ G+L+
Sbjct: 61 IGSLRYLCQSRPGISYLVGIVSRFMSNPLKTNFLSAKKILRYINSTLQYGILFLVVQATE 120
Query: 1234 HLNIECFSDAD 1244
L++E +SDAD
Sbjct: 121 QLDMEGYSDAD 131
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 902 MKEEMVALDTNGTWDLVPLLAGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGL 961
M ++ A+ T W L L K IGCKW + +K +G++ R K L+ K Y++ G+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 962 DYSDTFSPVAKLSSVRLFISLAATFDWPLHQLD 994
+ DTFS VAK++ V L +S+ L QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr07_pseudomolecule_IMGAG_V3 5264429-5264084 H
EGN_Mt090430 20090702
Length = 98
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 1289 MAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRFI 1346
MA + CEL WI+ LL ++ P L C++Q ALHIA VFH RTK+I++DC FI
Sbjct: 1 MANTTCELKWIKSLLLDLNILHKGPMLLNCNSQTALHIAKKLVFHYRTKYIQVDCHFI 58
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 993 LDVKNAFLYGDLQEEVYMEQPPGFVAQGELGKVCKLRKSLYGLKQSPRAWFGR 1045
+DV NAFL+GDLQE+VYM+ P GF VCKLRKS Y LK +P+ WF +
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSS-RLVCKLRKSQYVLKHAPQCWFAK 52
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236 H
EGN_Mt090430 20090702
Length = 89
Score = 64.3 bits (155), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 52/87 (59%)
Query: 1303 LEEIGFKSSLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRFIREKIQQGVISTGHVKT 1362
++E+ + P KL DN++ +++A NP+ R+KHI+ FIRE++ + +I + T
Sbjct: 1 MKELHCEVKKPLKLKIDNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPT 60
Query: 1363 SEQLGDIFTKALNGPRVDYLCNKLGMI 1389
QLGD FTKA R L +KLG+I
Sbjct: 61 EVQLGDGFTKAFKIDRFTCLRDKLGLI 87
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 51/186 (27%)
Query: 1153 PMTPNLQLSIGGELFDDP---EMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHW 1209
P P + + D+P +YR+++G L Y+ RP IA+ V ++
Sbjct: 17 PKFPTAGAKLSEDTNDEPMNATIYRQIIGPLRYMCNKRPYIAHGVGLVK----------- 65
Query: 1210 EALGQILCYLKGNPGRGLLYSNHRHLNIECFSDADWAGSKVDRRSISGYCVFVGGNLISW 1269
G + D++S + Y +G ISW
Sbjct: 66 -------------------------------------GDQDDKKSTTCYLFMIGAAPISW 88
Query: 1270 RSKKQNXXXXXXXXXXYRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASN 1329
SKKQ Y A + +AC+ +WI LLEE+ KL DN+ A+ +A
Sbjct: 89 SSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEELNAFEVDRIKLLVDNKLAIDLADR 148
Query: 1330 PVFHER 1335
P+ H +
Sbjct: 149 PISHGK 154
>IMGA|AC233656_7.1 hypothetical protein AC233656.1 25072-25343 H
EGN_Mt090430 20090702
Length = 73
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 16/85 (18%)
Query: 966 TFSPVAKLSSVRLFISLAATFDWPLHQLDVKNAFLYGDLQEEVYMEQPPGFVAQGELGKV 1025
+ SP +L + S A+ +W L+Q + KNAFL GDL ++VY+E
Sbjct: 5 SHSPFVRLGHISSNHSGASLHNWLLYQFNFKNAFLQGDLVDKVYIE-------------- 50
Query: 1026 CKLRKSLYGLKQSPRAWFGRFCNVV 1050
L+K+LY LKQS R WFGRF +
Sbjct: 51 --LQKALYNLKQSLRTWFGRFSTTL 73
>IMGA|Medtr5g015200.1 Helix-turn-helix, AraC type
chr05_pseudomolecule_IMGAG_V3 5047325-5042492 H
EGN_Mt090430 20090702
Length = 372
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 1286 YRAMAQSACELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRF 1345
++A AQ+ CE I L ++ L A + DNQ HIA N VF E+T HIEIDC
Sbjct: 70 HQAFAQATCEAQRILYLHQDFHI---LHANFY-DNQYGFHIAVNSVFCEQTIHIEIDCHV 125
Query: 1346 IREKIQQGVISTGHVKT 1362
IR+KIQ G+ G T
Sbjct: 126 IRDKIQAGIQKKGDSST 142
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%)
Query: 1010 MEQPPGFVAQGELGKVCKLRKSLYGLKQSPRAWFGRFCNVVHQFGMQKSTSDHSVF 1065
M QP GFV +VCKLRKSLYGLKQ+P+AWF + + Q + SD S+F
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLF 56
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVLF---PSKLLFPVKPRIFGCTCFVRDVR 692
P +FW+ A A FLINR+P+ +L PY +L+ P F ++FGC C+ ++
Sbjct: 688 PLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTF----KVFGCLCYASSLQ 743
Query: 693 PQVSKLDTKSLRCIFLGY 710
+KL+T++ + +FLGY
Sbjct: 744 SHRTKLETRARKSVFLGY 761
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 57.8 bits (138), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 1091 AGITSLKSFLQTQFQTKDLGLLKYFLGIEVSRCKRGIFLSQRKYVLDLLKETGKLGAKPC 1150
A I+ + + QF+ DLG + YFLGIE R R + + QR+Y + +LK+
Sbjct: 21 AHISEFRKDMMRQFEMTDLGHISYFLGIEFHRRSRDLLMHQRRYAIKILKKFDIEYRNHA 80
Query: 1151 SAPMTPNLQLSIGGELFD-DPEMYRRLVGKLNYLTVT 1186
P QLS + D DP Y RL+G ++ VT
Sbjct: 81 VTPAKTIFQLSKNNDESDVDPTQYGRLIGSQVFIAVT 117
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 1306 IGFKSSLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRFIREKIQQGVISTGHVKTSEQ 1365
IG + + L DN + +++A NP+ H R+KHIE+ ++RE++ +G + H K+ Q
Sbjct: 108 IGSQVFIAVTLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQ 167
Query: 1366 LGDIFTKAL 1374
+ D+ TK +
Sbjct: 168 IADVLTKGV 176
>IMGA|Medtr1g102700.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21129202-21129726 H
EGN_Mt090430 20090702
Length = 135
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 1169 DPEMYRRLVGKLNYLTVTRPDIAYSVSVLSQFMSSPTVIHWEALGQILCYLKGNPGRGLL 1228
D +R L+G L YL TRPD+A S+ +LSQFM + V H A+ ++L Y+KG +L
Sbjct: 27 DFTQFRMLIGCLRYLCNTRPDLALSIGLLSQFMQNLGVSHMIAVKRMLIYIKGKVEHAIL 86
Query: 1229 YSNHRHLN 1236
+SN+ N
Sbjct: 87 FSNNDESN 94
>IMGA|Medtr7g116810.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 27118605-27118065 H
EGN_Mt090430 20090702
Length = 141
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 680 RIFGCTCFVRDVRPQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVD 732
+IFGCT FV SKLD ++L+C+F+GYS QKGY C+ P +Y ++
Sbjct: 10 KIFGCTSFVYIQSDGRSKLDPRALKCVFIGYSSTQKGYICYHPPSHKYFAKIE 62
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 40/71 (56%)
Query: 858 YPISSFVSYDHLSPSSRCFVSNLDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDL 917
+PIS + SY++LS S F +LDS + P T +A W AMK E+ AL+ GTW L
Sbjct: 871 HPISHYYSYNNLSSSHCAFAMSLDSHTEPTTYAEASKFDCWNQAMKVELSALENTGTWRL 930
Query: 918 VPLLAGKKAIG 928
V L K IG
Sbjct: 931 VDLPPNVKPIG 941
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 7/112 (6%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVL---FPSKLLFPVKPRIFGCTCFVRDVR 692
P ++W+ A+ A F+INR+ S L+ PY +L P++ +F ++FG C+ +
Sbjct: 668 PVSYWSYALLHATFIINRVTSPTLHNKSPYQLLHDTIPAEHIF----KVFGSLCYSTTLH 723
Query: 693 PQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFENTPFFPS 744
+KL ++ + +FLGY+ KGY IS V F+E+ +P+
Sbjct: 724 SHRTKLSARARKSVFLGYTVGFKGYVLLDIHTREIHISRHVQFYEHILPYPA 775
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 56.6 bits (135), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 43/70 (61%)
Query: 1305 EIGFKSSLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRFIREKIQQGVISTGHVKTSE 1364
E+ + KL DN++A+++A N +FH + KH+E F+R+++ + + + T +
Sbjct: 3 ELKIGDEVAVKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQD 62
Query: 1365 QLGDIFTKAL 1374
QL D+FTKAL
Sbjct: 63 QLTDLFTKAL 72
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 649 FLINRMPSSMLNGAIPYSVLFPSKLLFPVKP-RIFGCTCFVRDVRPQVSKLDTKSLRCIF 707
FLINR+P+ +L PY VL+ K L + ++FGC C+ ++ +KL +++ + +F
Sbjct: 599 FLINRVPTLVLENKSPYQVLY--KTLPDINSFKVFGCLCYASTLQSHRTKLQSRARKSVF 656
Query: 708 LGYSWHQKGYRCFSPDLDRYLISVDVTFFE 737
LGY KG + + +S +VTF E
Sbjct: 657 LGYKSGYKGSFLYDLNTKEIFMSRNVTFHE 686
>IMGA|Medtr2g033520.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 9151691-9150256 E
EGN_Mt090430 20090702
Length = 61
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 1336 TKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKALNGPRVDY--LCNKLGMINIYA 1393
+ H+EIDC FI E ++ + HV T +QL D TKAL PR+ + L + LG+INIY+
Sbjct: 2 SSHVEIDCPFICENVKFQFLKLVHVNTDQQLVDPLTKAL--PRIQFHLLVSMLGLINIYS 59
Query: 1394 PT 1395
PT
Sbjct: 60 PT 61
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 54.3 bits (129), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 1319 DNQAALHIASNPVFHERTKHIEIDCRFIREKIQQGVISTGHVKTSEQLGDIFTKAL 1374
DN + +++A NP+ H R+KHIE+ ++RE++ +G + H K+ Q+ D+ TK +
Sbjct: 30 DNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGV 85
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVLF---PSKLLFPVKPRIFGCTCFVRDVR 692
P FW+ +V A ++INR+P+ +L PY + + P F ++FGC + +
Sbjct: 641 PKVFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNF----KVFGCLSYASTLH 696
Query: 693 PQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFENT-PFFPSPIY 747
+K D+++ +C+FLGY KG + + S +VT+ E+ P+ S Y
Sbjct: 697 NHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASRNVTYHEHILPYSNSKQY 752
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVLF---PSKLLFPVKPRIFGCTCFVRDVR 692
P FW+ +V A ++INR+P+ +L PY + + P F ++FGC + +
Sbjct: 711 PKIFWSYSVLHAIYIINRIPTPLLQNKSPYFLRYGHDPDLNNF----KVFGCLSYASTLH 766
Query: 693 PQVSKLDTKSLRCIFLGYSWHQKGYRCFSPDLDRYLISVDVTFFEN 738
+K D+++ +C+FLGY KG + + S +VT+ E+
Sbjct: 767 NHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFASRNVTYHEH 812
>IMGA|Medtr8g043360.1 Copia protein, related
chr08_pseudomolecule_IMGAG_V3 9348610-9348290 H
EGN_Mt090430 20090702
Length = 106
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 1295 ELIWIRQLLEEIGFKSSLPAKLWCDNQAALHIASNPVFHERTKHIEIDCRFIREKIQQGV 1354
+ +WI L EE+ KL DN++ + +A +P+ H +KHIE F+R+++ +
Sbjct: 6 QALWIEMLSEELNAFEVDRIKLLVDNKSTIDLADHPISHGISKHIERKFHFLRDQVNKMK 65
Query: 1355 ISTGHVKTSEQLGDIFTKALNGPRVDYL 1382
+ + T QL +IFTK L D L
Sbjct: 66 LDLEYCNTEVQLANIFTKPLKKAMFDEL 93
>IMGA|Medtr5g086560.1 Immunoglobulin/major histocompatibility
complex chr05_pseudomolecule_IMGAG_V3 33219418-33218915
H EGN_Mt090430 20090702
Length = 167
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 858 YPISSFVSYDHLSPSSRCFVSNLDSVSIPKTVVQALSHPGWCAAMKEEMVALDTNGTWDL 917
YPI++F++ D S + +++++ + P++ +A+ P W AM E+ AL+ NGTWDL
Sbjct: 79 YPITNFINNDCYSRRHQAYLASIHNNEEPQSYQEAMKKPEWQKAMTVELKALEENGTWDL 138
Query: 918 VPLLAGKKAIG 928
GK+ G
Sbjct: 139 TLPPEGKENSG 149
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 922 AGKKAIGCKWVFTVKMNPDGSVARLKARLVAKGYSQIYGLDY 963
A K +GC+WV+ +K G + + KARLVAKGY+Q+ G D+
Sbjct: 9 AMAKIVGCRWVYKIKYKASGEIEKYKARLVAKGYTQVEGEDF 50
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 636 PXTFWADAVSTACFLINRMPSSMLNGAIPYSVLFPSKLLFPVKPRIFGCTCFVRDVRPQV 695
P FW+ AV A +LINR+P+ +LN Y VL+ +++ ++FGC + +
Sbjct: 713 PKNFWSYAVLHAVYLINRIPTKILNNKSSYEVLY-NEVPDLSSLKVFGCLSYASTLPVNR 771
Query: 696 SKLDTKSLRCIFLGY 710
K D K+ +C FLG+
Sbjct: 772 YKFDPKARKCAFLGF 786