Jatropha Genome Database

JcCA0070381.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0070381.20 - phase: 0 
         (189 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g039290.1 Cyclin-like F-box chr05_pseudomolecule_IMGA...    60   9e-10
IMGA|Medtr5g039340.1 Cyclin-like F-box chr05_pseudomolecule_IMGA...    59   2e-09
IMGA|Medtr7g127580.1 Cyclin-like F-box chr07_pseudomolecule_IMGA...    49   1e-06

>IMGA|Medtr5g039290.1 Cyclin-like F-box
           chr05_pseudomolecule_IMGAG_V3 16604910-16608442 H
           EGN_Mt090430 20090702
          Length = 331

 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 4   WAQLPPEFLQVIAEKHTNYVDYYVCTRAVCKSWY--AAIQKRXXXXXXXXXXXXXXXXXX 61
           WA L    L +I EK    +D+ +   +VCK+W+  A +  R                  
Sbjct: 5   WANLDSLALNMIVEKLIEPIDH-IWFGSVCKNWHSIANLNHRHDHQFRSNVMPMLTIPSK 63

Query: 62  XXXDHRGFYSMSNDKTYRLELPEAFEKRCCGSSHGWLIMVEETPTIFLLNPLTRTR-IEL 120
              + R  YS+  ++ Y LE      KRCCGSSHGWL  ++E   I  +NP      I L
Sbjct: 64  KSPEKRCLYSIPANRVYPLESTMLNNKRCCGSSHGWLATLDEEDVITWVNPFKDVAPISL 123

Query: 121 PSYDY----RTYKFVAYKLDTS 138
           P  D     + Y F  +K+  S
Sbjct: 124 PPIDNYMVCKDYDFNVHKVTLS 145


>IMGA|Medtr5g039340.1 Cyclin-like F-box
           chr05_pseudomolecule_IMGAG_V3 16622963-16624444 E
           EGN_Mt090430 20090702
          Length = 383

 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 4   WAQLPPEFLQVIAEKHTNYVDYYVCTRAVCKSWY--AAIQKRXXXXXXXXXXXXXXXXXX 61
           WA L    L +I EK T  +D+ +   +VCK+W+  A +  +                  
Sbjct: 7   WANLDSLALNMILEKLTEPIDH-IWFGSVCKNWHSIANLSHQHDHQFRSNIMPMLTIPSE 65

Query: 62  XXXDHRGFYSMSNDKTYRLELPEAFEKRCCGSSHGWLIMVEETPTIFLLNPLTRTR-IEL 120
              + R  YS+  ++ Y LE      KRCCGSSHGWL  ++E   I  +NP      I L
Sbjct: 66  KSPEKRCLYSIPANRVYPLESTMLNNKRCCGSSHGWLATLDEEDVITWVNPFKDVAPISL 125

Query: 121 PSYDY----RTYKFVAYKLDTS 138
           P  D     + Y F  +K+  S
Sbjct: 126 PPIDNYMVCKDYDFNVHKVTLS 147


>IMGA|Medtr7g127580.1 Cyclin-like F-box
           chr07_pseudomolecule_IMGAG_V3 29938867-29941666 E
           EGN_Mt090430 20090702
          Length = 385

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 55/140 (39%), Gaps = 15/140 (10%)

Query: 1   MSLWAQLPPEFLQVIAEKHTNYVDYYVCTRAVCKSWYAAIQKRXXXXXXXXXXXXXXXXX 60
           +  WA LP E L++   +    +   +   AVCK W +                      
Sbjct: 29  LQTWADLPAEVLELFLSRLD--IGDNIRASAVCKRWCSV-----ATSVRVLDQSPWLMYF 81

Query: 61  XXXXDHRGFYSMSNDKTYRLELPEAFEKRCCGSSHGWLIM-------VEETPTIFLLNPL 113
               +   FY     KTY LELPE    R C +  GWL++       ++      L NP 
Sbjct: 82  PKKGNCYDFYDPVQRKTYSLELPELDGCRVCYTKDGWLLLNRQDWRRLDGNHIFSLFNPF 141

Query: 114 TRTRIELPSYDYRTYKFVAY 133
           TR  I LP +D RTY+  A+
Sbjct: 142 TRDLITLPKFD-RTYQIAAF 160