Jatropha Genome Database
- JcCA0070351.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0070351.20 + phase: 0 /TE/partial
(443 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr1g102740.1 gag-pol polyprotein, related chr01_pseudomo... 89 4e-18
IMGA|Medtr1g102780.1 gag-pol polyprotein, related chr01_pseudomo... 87 1e-17
IMGA|Medtr4g114890.1 gag-pol polyprotein, related chr04_pseudomo... 87 1e-17
IMGA|Medtr8g074430.1 integrase, related chr08_pseudomolecule_IMG... 84 1e-16
IMGA|Medtr5g046390.1 gag-pol polyprotein, related chr05_pseudomo... 83 3e-16
IMGA|Medtr3g058900.1 Zinc finger, CCHC-type chr03_pseudomolecule... 77 2e-14
IMGA|Medtr6g086660.1 gag-pol polyprotein, related chr06_pseudomo... 74 1e-13
IMGA|Medtr6g086670.1 gag-pol polyprotein, related chr06_pseudomo... 64 1e-10
IMGA|Medtr6g077130.1 Zinc finger, CCHC-type chr06_pseudomolecule... 63 2e-10
IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related ... 55 9e-08
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 52 6e-07
IMGA|Medtr3g044270.1 Peptidase S8 and S53, subtilisin, kexin, se... 48 7e-06
IMGA|Medtr5g082240.1 Peptidase S8 and S53, subtilisin, kexin, se... 48 7e-06
>IMGA|Medtr1g102740.1 gag-pol polyprotein, related
chr01_pseudomolecule_IMGAG_V3 21153367-21155226 E
EGN_Mt090430 20090702
Length = 234
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 317 WFLDSGCSNHMSGTKQLFKELDEKEKTTVRLGDDKVIQVEGKGTIAINTRHGNTKLLNDV 376
W +DSGC+ H + + LFKEL + T + + I +EG GT+ I +R G +LN+V
Sbjct: 13 WVVDSGCTTHSTYDRNLFKELKKTTNTKATIANGAYIPIEGIGTVEIESRSGVKLILNNV 72
Query: 377 QFAPSLAYNLLSIGQLMTSGYRIVFDDNSCCIEDKKTGHTIVNVPMTQNKMFPLDA 432
+ P Y+LLS+ L+ GY+++F N C I+D+ + + + M K+F LD+
Sbjct: 73 NYIPENCYSLLSVAGLLEEGYQVLFKRNKCLIKDQ--NNKFIEIRMKCRKLFVLDS 126
>IMGA|Medtr1g102780.1 gag-pol polyprotein, related
chr01_pseudomolecule_IMGAG_V3 21184395-21181931 E
EGN_Mt090430 20090702
Length = 311
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 316 IWFLDSGCSNHMSGTKQLFKELDEKEKTTVRLGDDKVIQVEGKGTIAINTRHGNTKLLND 375
W ++SGC+ H + + LFKEL + T + + I +EG GT+ I +R G +LN+
Sbjct: 35 FWVVESGCTTHSTYDRNLFKELKKTTNTKATIANGAYIPIEGIGTVEIESRSGVKLILNN 94
Query: 376 VQFAPSLAYNLLSIGQLMTSGYRIVFDDNSCCIEDKKTGHTIVNVPMTQNKMFPLDA 432
V + P Y+LLS+ L+ GY+++F N C I+D+ + + + M K+F LD+
Sbjct: 95 VNYIPENCYSLLSVAGLLEEGYQVLFKRNKCLIKDQN--NKFIEIRMKCRKLFVLDS 149
>IMGA|Medtr4g114890.1 gag-pol polyprotein, related
chr04_pseudomolecule_IMGAG_V3 26420343-26419721 E
EGN_Mt090430 20090702
Length = 183
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
Query: 317 WFLDSGCSNHMSGTKQLFKELDEKEKTTVRLGDDKVIQVEGKGTIAINTRHGNTKLLNDV 376
W +DSGC++HM+ + LFKEL++ + VR+ + I+VEG GT+ + + H K +++V
Sbjct: 13 WLIDSGCTHHMTHDRDLFKELNKSTISKVRMLNGAHIEVEGIGTVLVKS-HSGYKQISNV 71
Query: 377 QFAPSLAYNLLSIGQLMTSGYRIVFDDNSCCIEDK 411
+AP L +LLS+ QL+T GY+++F+ C I+D+
Sbjct: 72 LYAPKLNQSLLSVPQLLTKGYKVLFEHEKCVIKDQ 106
>IMGA|Medtr8g074430.1 integrase, related
chr08_pseudomolecule_IMGAG_V3 14788217-14787399 H
EGN_Mt090430 20090702
Length = 272
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 99/210 (47%), Gaps = 24/210 (11%)
Query: 9 STQPLIPLFKGESYEFWAIKMRTMFISQEL--WELVENG-----------------CEDT 49
T+P P F G+ Y W +M+ + W+ +E+G E T
Sbjct: 15 GTRP--PFFDGKKYYIWKHRMQIFVQGTDFDAWKAIEHGPFFPTHIVNGFTKPKSKTEWT 72
Query: 50 DDEQKLRENKKKDAKALFFLQQAVSDEIFSHISAAATSKEAWQILKNEFQGSSKVITVKL 109
DD++K D++A + A+ ++ FS++ T++E W L+N +G+ +V ++
Sbjct: 73 DDDKK---KVHPDSRAKHLISCALCNDEFSNVMYCETAREMWNTLQNIHEGTGEVKMARI 129
Query: 110 QSLRRTFETLQMGDSESVQAYLSRASKIISQMRAYGEKITDETVVLKLLRSLSPKFDHVV 169
L +E M E++ R +++ + + G+KI +E +V K+LR LS K+ H V
Sbjct: 130 GYLTGEYERFCMKPGENIHDMQMRFYDVVNHLASLGKKIPNEDLVSKVLRCLSKKWRHKV 189
Query: 170 AAIEESKDLSAYSFDDLMGSLQAHESRINK 199
AI +S D L L+ HE+ +N+
Sbjct: 190 RAITKSIDFPTMLLVSLFRELEEHETELNR 219
>IMGA|Medtr5g046390.1 gag-pol polyprotein, related
chr05_pseudomolecule_IMGAG_V3 19508075-19507539 H
EGN_Mt090430 20090702
Length = 178
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
Query: 315 AIWFLDSGCSNHMSGTKQLFKELDEKEKTTVRLGDDKVIQVEGKGTIAINTRHGNTKLLN 374
++W +DSG +N+++ +++F ELD+ + +R+ + I EG GTI H +KL+
Sbjct: 10 SLWLIDSGATNNLTCDREVFTELDKSYSSVIRVANGAEITSEGIGTIVF-KNHSGSKLVL 68
Query: 375 DVQFAPSLAYNLLSIGQLMTSGYRIVFDDNSCCIEDKKTGHTIVNVPMTQNKMF 428
+V + P ++ NLLS+ QL+ +GY+++F+ SC I D + + + M +N+ +
Sbjct: 69 NVLYVPQISENLLSVPQLLKNGYKVLFEHESCMIND-QNNEEVFKIQMKKNRFY 121
>IMGA|Medtr3g058900.1 Zinc finger, CCHC-type
chr03_pseudomolecule_IMGAG_V3 13082612-13083121 H
EGN_Mt090430 20090702
Length = 169
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 83/169 (49%), Gaps = 1/169 (0%)
Query: 121 MGDSESVQAYLSRASKIISQMRAYGEKITDETVVLKLLRSLSPKFDHVVAAIEESKDLSA 180
M + ++ Y S I QM+ GE + D++V+ K+LR+L +FDH+V IEE+KDL+
Sbjct: 1 MKKEDKIKDYFSSVLTITKQMKICGETLFDKSVMEKILRTLPSQFDHLVITIEETKDLNE 60
Query: 181 YSFDDLMGSLQAHESRI-NKSSTKIEEKAFQVKGESFHSKSHDKVXXXXXXXXXXXXXXX 239
++L G+L+AHE ++ ++ K EE++ + + S
Sbjct: 61 AKIEELQGALEAHEMKVTSRKEEKDEEQSLLARFKQEESMKEYWKKKKGKNHQKHGDKPE 120
Query: 240 XXXXXXXXXXXEQRQYKDNLIKCYYCDKVGHKEADCWTKQRNEGKQKNE 288
+ +++ ++C+ C+K GH ++CW + GK K++
Sbjct: 121 SLKSGGKSSKNQGKKFNKKNVQCFNCEKYGHYASECWFNKDRNGKNKDQ 169
>IMGA|Medtr6g086660.1 gag-pol polyprotein, related
chr06_pseudomolecule_IMGAG_V3 17762174-17761410 H
EGN_Mt090430 20090702
Length = 254
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 317 WFLDSGCSNHMSGTKQLFKELDEKE-KTTVRLGDDKVIQVEGKGTIAINTRHGNTKLLND 375
W++DSG ++HM+ + LFKEL++ + +G+ I+VEG GT+ I H KL+ +
Sbjct: 13 WYIDSGATHHMTYDRSLFKELNKTIISCNIIVGNGAPIEVEGFGTVTIK-HHSGLKLILN 71
Query: 376 VQFAPSLAYNLLSIGQLMTSGYRIVFDDNSCCIEDKKTGHTIVNVPMTQNKMFPLDASV 434
V + P L +LLS+ QL+ GY + F NSC I+ + ++ + M ++K F LD+ +
Sbjct: 72 VFYVPKLTSSLLSVPQLLEEGYHVFFIHNSCEIKH-QNNKEVIKIQM-ESKKFVLDSMI 128
>IMGA|Medtr6g086670.1 gag-pol polyprotein, related
chr06_pseudomolecule_IMGAG_V3 17772429-17771671 H
EGN_Mt090430 20090702
Length = 252
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 8/97 (8%)
Query: 317 WFLDSGCSNHMSGTKQLFKELDEKEKTTVR----LGDDKVIQVEGKGTIAINTRHGNTKL 372
W +DSG ++HM+ + FKEL+ KT + + + I+VEG GTI I H KL
Sbjct: 13 WHIDSGATHHMTYDRNFFKELN---KTAISYNFIVANGAPIEVEGIGTITIRN-HSGLKL 68
Query: 373 LNDVQFAPSLAYNLLSIGQLMTSGYRIVFDDNSCCIE 409
+ +V + P+L ++LS+ QL+ G+ + F +C I+
Sbjct: 69 ILNVLYVPNLTSSVLSVPQLLEEGFHVFFIHKACFIK 105
>IMGA|Medtr6g077130.1 Zinc finger, CCHC-type
chr06_pseudomolecule_IMGAG_V3 15158354-15162093 E
EGN_Mt090430 20090702
Length = 532
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 16/159 (10%)
Query: 255 YKDNLIKCYYCDKVGHKEADCWTKQRNEGKQKNEGKHANVAE----EEESMLFMAHSIDK 310
+K NL +CY C K GHK C ++ N K + AN+ + + + +A I K
Sbjct: 246 FKANLGECYVCGKKGHKAYHCRYRKVNGQPPKPK---ANLTQGDDKKYDDDDVIAAVISK 302
Query: 311 -NAANAI--WFLDSGCSNHMSGTKQLFKEL----DEKEKTTVRLGDDKVIQVEGKGTIAI 363
+ N + W +DSG + H+ ++ F D++++ V LGD + V GKG + +
Sbjct: 303 VHLVNDVQKWVVDSGATRHICAKREAFTSYISVGDDEDQ--VYLGDSRTTAVNGKGKVIL 360
Query: 364 NTRHGNTKLLNDVQFAPSLAYNLLSIGQLMTSGYRIVFD 402
G T L+DV P++ NL+S+ L G ++ F+
Sbjct: 361 KLTSGKTLALSDVLNVPTIRTNLISVALLNKVGVKVSFE 399
>IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related
chr05_pseudomolecule_IMGAG_V3 21011474-21012209 E
EGN_Mt090430 20090702
Length = 210
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 317 WFLDSGCSNHMSGTKQLFKELDEKEKTTVRLGDDKVIQVEGKGTIAINTRHGNTKLLNDV 376
W LDSG SNHM+GT Q ++ E V L + + +GT+ + + L +V
Sbjct: 36 WILDSGASNHMTGTLQYMHDVKEVIGCPVGLPNCRTTTCTKEGTVKLT----DGLRLENV 91
Query: 377 QFAPSLAYNLLSIGQLMTS-GYRIVFDDNSCCIEDK 411
+ P L NL+SI QL+ + F+ N C I+D+
Sbjct: 92 LYVPKLNCNLISISQLLDELNCNVQFNGNFCAIQDR 127
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 292 ANVAEEEESMLFMAHSIDKNAANAIWFLDSGCSNHMSGTKQLFKELDEKEKTTVRLGDDK 351
++V + +S + S N+ + +WFLDSG + H+ F + V L +
Sbjct: 354 SSVPDSTQSGISSIFSCSINSKSDVWFLDSGANEHIVNNTHWFTSFHKINPRPVNLPNGS 413
Query: 352 VIQVEGKGTIAINTRHGNTKLLNDVQFAPSLAYNLLSIGQLMTS-GYRIVFDDNSCCIED 410
+ VE GTI R L +V ++PS NL+SI ++ +S +F + C ++D
Sbjct: 414 SVLVEYAGTI----RFTPQFYLENVLYSPSFTLNLISIFKVCSSLNCYAIFHNKQCLLQD 469
>IMGA|Medtr3g044270.1 Peptidase S8 and S53, subtilisin, kexin,
sedolisin chr03_pseudomolecule_IMGAG_V3
12336621-12336989 H EGN_Mt090430 20090702
Length = 122
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 292 ANVAEEEESMLFMAHSIDKNAANAIWFLDSGCSNHMSGTKQLFKELDEKEKTTVRLGDDK 351
+N+ + E +L H I +A++ W +DSG S H+ T+ +F E V+L +
Sbjct: 7 SNLTYDNELLLVEEHDIVDSASS--WVIDSGISVHVISTRDVFSSYTSGEFGDVKLAHEG 64
Query: 352 VIQVEGKGTIAINTRHGNTKLLNDVQFAPSLAYNLLSIGQLMTSGYRIVF 401
V++ G + + +G L D + + NLLS+ +L GY +F
Sbjct: 65 VLKCVGHEDVNLEMSNGAKLTLKDEKHVLDIQLNLLSVAKLCDEGYDSLF 114
>IMGA|Medtr5g082240.1 Peptidase S8 and S53, subtilisin, kexin,
sedolisin chr05_pseudomolecule_IMGAG_V3
30911334-30910966 H EGN_Mt090430 20090702
Length = 122
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 292 ANVAEEEESMLFMAHSIDKNAANAIWFLDSGCSNHMSGTKQLFKELDEKEKTTVRLGDDK 351
+N+ + E +L H I +A++ W +DSG S H+ T+ +F E V+L +
Sbjct: 7 SNLTYDNELLLVEEHDIVDSASS--WVIDSGISVHVISTRDVFSSYTSGEFGDVKLAHEG 64
Query: 352 VIQVEGKGTIAINTRHGNTKLLNDVQFAPSLAYNLLSIGQLMTSGYRIVF 401
V++ G + + +G L D + + NLLS+ +L GY +F
Sbjct: 65 VLKCVGHEDVNLEMSNGAKLTLKDEKHVLDIQLNLLSVAKLCDEGYDSLF 114