Jatropha Genome Database

JcCA0068161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0068161.10 + phase: 0 /pseudo/partial
         (291 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g107740.1 Fumarate lyase; Fumarate hydratase, class I...   473   e-134

>IMGA|Medtr1g107740.1 Fumarate lyase; Fumarate hydratase, class II
           chr01_pseudomolecule_IMGAG_V3 22807066-22813739 F
           EGN_Mt090430 20090702
          Length = 491

 Score =  473 bits (1217), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 227/276 (82%), Positives = 244/276 (88%), Gaps = 4/276 (1%)

Query: 1   MATGVVARRLXXXXXXXXXXXXLRFASWRLYSTAFREERDTFGPIQVPSDKLWGAQTQRS 60
           MA  V++RRL              F+S    +T FREERDTFGPIQVPSDKLWGAQTQRS
Sbjct: 1   MALYVLSRRLSTKSTSPTLFTFRYFSS----TTTFREERDTFGPIQVPSDKLWGAQTQRS 56

Query: 61  LQNFEIGGEREQMPEPIIRAFGILKKCAAKVNMEYGLDPSIGKAIMQAAQEVAEGKLNDH 120
           LQNF+IGG RE+MPEPIIR+FGILKKCAAKVNMEYGLDP+IGKAIM+AAQEVA+GK NDH
Sbjct: 57  LQNFDIGGPRERMPEPIIRSFGILKKCAAKVNMEYGLDPTIGKAIMKAAQEVADGKHNDH 116

Query: 121 FPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGGKFVHPNDHVNRSQSSNDTFPTVMH 180
           FPLVVWQTGSGTQSNMNANEVIANRA+EILGHKRG KFVHPNDHVN SQSSNDTFPTVMH
Sbjct: 117 FPLVVWQTGSGTQSNMNANEVIANRASEILGHKRGEKFVHPNDHVNMSQSSNDTFPTVMH 176

Query: 181 IAAATEINSRLIPNLKNLHTTLHSKSIEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVK 240
           IAA TEINSRLIP+LK LH TL +KSIEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQ+K
Sbjct: 177 IAAGTEINSRLIPSLKTLHATLDAKSIEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQLK 236

Query: 241 YGIDRIMCTLPRMYQLAQGGTAVGTGLNTKKGFDVK 276
           Y +DR++  LPRMYQLAQGGTAVGTGLNTKKGFDVK
Sbjct: 237 YSLDRVITILPRMYQLAQGGTAVGTGLNTKKGFDVK 272