Jatropha Genome Database
- JcCA0066791.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0066791.10 + phase: 1 /TE/partial
(1652 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g053420.1 RNA-directed DNA polymerase (Reverse transc... 216 7e-56
IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse transc... 204 3e-52
IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse transc... 179 8e-45
IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse transc... 176 9e-44
IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse transc... 168 2e-41
IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse transc... 163 8e-40
IMGA|Medtr8g021900.1 contains similarity to reverse trancriptase... 138 3e-32
IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse transc... 135 2e-31
IMGA|Medtr3g016900.1 RNA-directed DNA polymerase (Reverse transc... 133 6e-31
IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse transc... 122 2e-27
IMGA|Medtr2g100610.1 RNA-directed DNA polymerase (reverse transc... 108 2e-23
IMGA|Medtr2g100360.1 RNA-directed DNA polymerase (reverse transc... 107 5e-23
IMGA|Medtr2g100590.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V... 107 5e-23
IMGA|Medtr2g100330.1 RNA-directed DNA polymerase (reverse transc... 107 7e-23
IMGA|Medtr4g140270.1 RNA-directed DNA polymerase ; Ribonuclease ... 107 7e-23
IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse transc... 105 1e-22
IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse transc... 98 4e-20
IMGA|Medtr7g107300.1 RNA-directed DNA polymerase (reverse transc... 97 5e-20
IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse transc... 94 7e-19
IMGA|Medtr3g097870.1 RNA-directed DNA polymerase (Reverse transc... 93 8e-19
IMGA|Medtr4g084360.1 Putative ribonuclease H protein At1g65750, ... 93 1e-18
IMGA|Medtr8g034900.1 contains similarity to reverse trancriptase... 90 1e-17
IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse transc... 89 2e-17
IMGA|Medtr3g024790.1 RNA-directed DNA polymerase (Reverse transc... 89 2e-17
IMGA|AC233572_22.1 RNA-directed DNA polymerase (Reverse transcri... 86 1e-16
IMGA|Medtr7g068060.1 RNA-directed DNA polymerase (Reverse transc... 86 1e-16
IMGA|AC233685_57.1 RNA-directed DNA polymerase (Reverse transcri... 84 6e-16
IMGA|AC225611_8.1 contains similarity to reverse trancriptase, r... 84 7e-16
IMGA|Medtr3g025680.1 RNA-directed DNA polymerase (reverse transc... 83 1e-15
IMGA|Medtr5g030050.1 RNA-directed DNA polymerase (Reverse transc... 83 1e-15
IMGA|Medtr1g084160.1 Ribonuclease H chr01_pseudomolecule_IMGAG_V... 81 5e-15
IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse transc... 80 6e-15
IMGA|Medtr2g034130.1 Polynucleotidyl transferase, Ribonuclease H... 80 6e-15
IMGA|Medtr3g044190.1 RNA-directed DNA polymerase (reverse transc... 80 7e-15
IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse transc... 79 1e-14
IMGA|Medtr2g111140.1 RNA-directed DNA polymerase (reverse transc... 79 2e-14
IMGA|Medtr6g024980.1 Putative ribonuclease H protein At1g65750, ... 78 3e-14
IMGA|Medtr4g021840.1 RNA-directed DNA polymerase, related, putat... 78 3e-14
IMGA|Medtr8g105650.1 reverse transcriptase, putative; 100033-105... 76 1e-13
IMGA|Medtr3g138250.1 RNA-directed DNA polymerase (reverse transc... 75 3e-13
IMGA|Medtr4g160830.1 Putative ribonuclease H protein At1g65750, ... 74 7e-13
IMGA|CU179634_33.1 RNA-directed DNA polymerase (Reverse transcri... 72 2e-12
IMGA|Medtr5g048900.1 hypothetical protein chr05_pseudomolecule_I... 70 9e-12
IMGA|Medtr2g049290.1 RNA-directed DNA polymerase (Reverse transc... 69 3e-11
IMGA|Medtr1g039870.1 non-LTR retrolelement reverse transcriptase... 67 8e-11
IMGA|Medtr2g114260.1 hypothetical protein chr02_pseudomolecule_I... 67 9e-11
IMGA|Medtr8g024620.1 hypothetical protein chr08_pseudomolecule_I... 64 4e-10
IMGA|Medtr3g006040.1 NADPH-dependent FMN reductase chr03_pseudom... 64 8e-10
IMGA|Medtr1g126570.1 non-LTR retrolelement reverse transcriptase... 63 1e-09
IMGA|Medtr3g122870.1 hypothetical protein chr03_pseudomolecule_I... 62 3e-09
IMGA|Medtr4g097410.1 IMP dehydrogenase/GMP reductase, related, r... 62 3e-09
IMGA|Medtr5g013050.1 RNA-directed DNA polymerase (reverse transc... 60 1e-08
IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse transc... 59 1e-08
IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse transc... 59 1e-08
IMGA|AC233668_8.1 RNA-directed DNA polymerase (reverse transcrip... 59 1e-08
IMGA|Medtr5g029030.1 RNA-directed DNA polymerase (reverse transc... 59 2e-08
IMGA|Medtr3g008760.1 non-LTR retrolelement reverse transcriptase... 59 2e-08
IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse transcri... 59 2e-08
IMGA|Medtr2g104960.1 non-LTR retrolelement reverse transcriptase... 57 5e-08
IMGA|Medtr5g088270.1 RNA-directed DNA polymerase (reverse transc... 57 5e-08
IMGA|Medtr3g009350.1 RNA-directed DNA polymerase (reverse transc... 57 6e-08
IMGA|AC235669_13.1 RNA-directed DNA polymerase (Reverse transcri... 57 6e-08
IMGA|Medtr3g019330.1 RNA-directed DNA polymerase (reverse transc... 57 7e-08
IMGA|Medtr7g076260.1 hypothetical protein chr07_pseudomolecule_I... 56 1e-07
IMGA|Medtr7g146050.1 Zinc finger, CCHC-type, putative chr07_pseu... 56 2e-07
IMGA|Medtr7g127540.1 RNA-directed DNA polymerase (reverse transc... 55 2e-07
IMGA|Medtr7g077130.1 RNA-directed DNA polymerase (reverse transc... 55 3e-07
IMGA|Medtr1g117580.1 hypothetical protein chr01_pseudomolecule_I... 55 4e-07
IMGA|Medtr5g095750.1 non-LTR retrolelement reverse transcriptase... 54 6e-07
IMGA|Medtr3g043440.1 Polynucleotidyl transferase, Ribonuclease H... 54 6e-07
IMGA|Medtr5g023930.1 Zinc finger, CCHC-type chr05_pseudomolecule... 54 1e-06
IMGA|Medtr4g128710.1 non-LTR retrolelement reverse transcriptase... 53 1e-06
IMGA|Medtr1g105720.1 hypothetical protein chr01_pseudomolecule_I... 53 1e-06
IMGA|Medtr3g079550.1 non-LTR retrolelement reverse transcriptase... 53 1e-06
IMGA|Medtr4g018900.1 non-LTR retrolelement reverse transcriptase... 52 2e-06
IMGA|Medtr3g030370.1 hypothetical protein chr03_pseudomolecule_I... 52 2e-06
IMGA|Medtr1g064980.1 RNA-directed DNA polymerase ; Ribonuclease ... 52 3e-06
IMGA|Medtr4g022090.1 Putative non-LTR retroelement reverse trans... 52 4e-06
IMGA|Medtr4g011530.1 HMG-I and HMG-Y, DNA-binding chr04_pseudomo... 51 4e-06
IMGA|Medtr7g005440.1 Histone H4; Histone-fold chr07_pseudomolecu... 51 4e-06
IMGA|Medtr5g084580.1 RNA-directed DNA polymerase (reverse transc... 51 5e-06
IMGA|Medtr4g136100.1 reverse transcriptase, related chr04_pseudo... 50 9e-06
>IMGA|Medtr8g053420.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
12119249-12120974 H EGN_Mt090430 20090702
Length = 477
Score = 216 bits (551), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 118/316 (37%), Positives = 175/316 (55%), Gaps = 3/316 (0%)
Query: 1125 LRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKAS 1184
LRQGDPLSPYLFV+ ME LS +I + V W PV S+ GPP+SHL FADD+++F KA+
Sbjct: 21 LRQGDPLSPYLFVMCMENLSHMILEAVDDSRWKPVTLSRNGPPLSHLFFADDVLLFSKAT 80
Query: 1185 VRXAKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLG 1244
V +V+ DV F + N +KSR +FS + H + + G+ S L KYLG
Sbjct: 81 VSQVRVMEDVFTKFAGTSGLKVNTSKSRAFFSNVVTHSKINTMVSVTGIHNTSSLDKYLG 140
Query: 1245 VPL-YGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPS 1303
P+ +GR Y +I KV+ G+ L K+ ++++P Y M W P
Sbjct: 141 FPIFHGRMKRVDYDFLIDKVQSCLASWKNKLLNKAGRLTLAKSVLNAIPTYYMQISWTPQ 200
Query: 1304 SICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWK 1363
SIC LD++ R F W + + +HLV W+ + +P+ GGL R AR N LLGKL W
Sbjct: 201 SICNQLDKMTRKFIWKGT-DGKGVHLVSWDKITRPKSLGGLGVRVARNANTALLGKLVWD 259
Query: 1364 LLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSSTWKGIIRSFNTLQSHVRWRVGNGQQIS 1423
+ N + VQ+LS KY ++ + + S+TW ++++ + L+ + +RVGNG S
Sbjct: 260 IHTNANKSWVQILSNKYLGNYNVLDVPKKNGSTTWNSMLKARSVLRDGLVFRVGNG-TTS 318
Query: 1424 XWYDSWLSMGPLVDLL 1439
WY SW ++G ++
Sbjct: 319 FWYSSWTTLGTFASMV 334
>IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr01_pseudomolecule_IMGAG_V3 1684225-1680716 E
EGN_Mt090430 20090702
Length = 659
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 127/336 (37%), Positives = 173/336 (51%), Gaps = 6/336 (1%)
Query: 1099 MSALSXFSLAVLWNGSPSSFFSQTWGLRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWIP 1158
MS ++ SL++ WNG F GLRQGDPLSPYLFVL ME LSL+I QV +W P
Sbjct: 1 MSCITSSSLSLKWNGEKLDSFKPKRGLRQGDPLSPYLFVLCMEKLSLMIQNQVTNNTWRP 60
Query: 1159 VFASKGGPPISHLLFADDLIIFGKASVRXAKVVHDVLADFCSGNSQTTNLAKSRIYFSKS 1218
+ S+ GP SHLLFADD ++F +A KVV +VL FC + N+ K + S +
Sbjct: 61 IKISRHGPSFSHLLFADDCLLFTEAKSSQVKVVRNVLQKFCFASGLKINIQKLKFMSSSN 120
Query: 1219 IAHVVWLRIQQLLGVAIASDLGKYLGVP-LYGRSSVSQYQSIIQKVEXXXXXXXXXXXXX 1277
++ + + LL S LGKYLG P L GR S + I+ K+
Sbjct: 121 VSRHKQHKFESLLQFNHTSHLGKYLGFPMLSGRIKNSDFNFILDKINGRLAGWKMNLLSR 180
Query: 1278 XGKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIK 1337
G+ L K+ ++++P Y M WLPS IC +D R+F WG + +C H V W L
Sbjct: 181 PGRITLAKSVVTAMPIYTMQNLWLPSGICENIDATVRSFIWGKN--YC--HWVNWKNLTM 236
Query: 1338 PRXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLG-HSCPPAVQVSDSS 1396
P+ GGL R+AR NI+LLGK W +L L VQ+L KY H ++ DS
Sbjct: 237 PKSCGGLGIRTARNSNISLLGKHIWDILHQPEKLWVQMLRHKYLSNTHIMHTPFKLGDSC 296
Query: 1397 TWKGIIRSFNTLQSHVRWRVGNGQQISXWYDSWLSM 1432
W+ I+++ L RVG W+D L+
Sbjct: 297 IWRAIVKAVEILGPGFVCRVGRASYGYRWFDHNLTQ 332
>IMGA|Medtr1g089710.1 RNA-directed DNA polymerase (Reverse
transcriptase); Histone H2B; Histone-fold;
Polynucleotidyl transferase, Ribonuclease H fold
chr01_pseudomolecule_IMGAG_V3 17931605-17934389 E
EGN_Mt090430 20090702
Length = 802
Score = 179 bits (455), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 184/369 (49%), Gaps = 11/369 (2%)
Query: 1088 FGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQGDPLSPYLFVLYMEGLSLLI 1147
GFP V IM+ ++ S +VL G PS+ F GLRQGDPLSPYLF+L E LS L+
Sbjct: 1 MGFPPNLVKTIMNCVTTVSFSVLIIGKPSNKFYPQRGLRQGDPLSPYLFILCAEVLSGLL 60
Query: 1148 HQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRXAKVVHDVLADFCSGNSQTTN 1207
+ + + + + PPISHL FADD + F ++ + A + D L + + Q N
Sbjct: 61 TKGLADGKFHGIQIAPTAPPISHLFFADDSLFFCRSEPKEANFLMDTLQLYQDMSGQKVN 120
Query: 1208 LAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVPL-YGRSSVSQYQSIIQKVEXX 1266
L KS++ F+ S+ + Q L + I++ + KYLG+P +GRS V + I+ KV
Sbjct: 121 LDKSKMVFNPSLREDIKKDFQVQLPINISNKITKYLGLPTQFGRSKVQDFNYIMDKVIKK 180
Query: 1267 XXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCK 1326
G+ VLIK + ++ +VM+ LP C ++R F+WGS+ ++ K
Sbjct: 181 MKGWKERNLSFAGRSVLIKAVVQAIHVFVMSCFLLPQETCDNIERAVCKFWWGSNGDNKK 240
Query: 1327 MHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSC 1386
+H V + +++ GGL FR+ R FN+ +L K W+L N L +V KY
Sbjct: 241 IHWVKKDKVLRSTIDGGLGFRNLRDFNMVMLAKQIWRLHTNQQALISKVFKAKYYPTTDV 300
Query: 1387 PPA-VQVSDSSTWKGIIRSFNTLQSHVRWRVGNGQQISXWYDSW---------LSMGPLV 1436
A V + S W+ ++ L +VGNG I W D W L+ P V
Sbjct: 301 LQATVGYAPSYAWRSFHQAIWILNKGCCMKVGNGASIDIWKDQWLHNQIGFKVLTHNPGV 360
Query: 1437 DLLETLHEV 1445
D +E + ++
Sbjct: 361 DNVERVQDL 369
>IMGA|Medtr2g117110.1 RNA-directed DNA polymerase (Reverse
transcriptase); Hemopexin; Polynucleotidyl transferase,
Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3
27457173-27452820 H EGN_Mt090430 20090702
Length = 1147
Score = 176 bits (446), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 113/363 (31%), Positives = 180/363 (49%), Gaps = 19/363 (5%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQ 1127
D+ K YD+V+W++L ++ GF +W+ + +++ S VL N GLRQ
Sbjct: 397 DISKTYDRVDWNYLFSIMEKMGFNPIWIKWMRMSVTMVSYHVLVNDDRVGPIYPGRGLRQ 456
Query: 1128 GDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRX 1187
GDPLSPYLF+L EG+S LI Q V K P +SHLLFADD +F +A+
Sbjct: 457 GDPLSPYLFILCAEGMSTLIKQAERNNILHGVKVCKRAPTVSHLLFADDSFLFFRANENE 516
Query: 1188 AKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVP- 1246
+ + D+L + + + Q N+ KS IYFS+++ + +L V+ + KYLG+P
Sbjct: 517 TRALKDILDTYANASDQLINMQKSEIYFSRNVPVTKKNTLSNMLWVSEGIGIRKYLGLPS 576
Query: 1247 LYGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSIC 1306
+ GRS S + I ++ GKEVLIK+ ++P+Y M+ LP SI
Sbjct: 577 MIGRSKKSIFNYIKDRIWNRISGLSSKMLSQAGKEVLIKSVAQAIPSYCMSVFLLPHSIA 636
Query: 1307 GTLDRLARNFYWGSSVE-HCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLL 1365
++++ +F+WG E + + W L + +GG+ FR F++ + GK W L
Sbjct: 637 DDIEKMLNSFWWGMKNEGRGGIRWMSWERLTMRKEWGGMGFRHIHGFDLAMSGKQCWNFL 696
Query: 1366 VNDSDLXVQVLSLKY---------CLGHSCPPAVQVSDSSTWKGIIRSFNTLQSHVRWRV 1416
N + ++ KY LGH+ S W+ I S L++ +WR+
Sbjct: 697 TNPDAMVSRIFKAKYFTNENFLGASLGHNP--------SYVWRSIWSSRIFLKTGYQWRI 748
Query: 1417 GNG 1419
G+G
Sbjct: 749 GDG 751
>IMGA|Medtr2g005080.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3 86385-88912
E EGN_Mt090430 20090702
Length = 566
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 90/258 (34%), Positives = 148/258 (57%), Gaps = 1/258 (0%)
Query: 1124 GLRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKA 1183
GLRQGDPLSPYLF+L +EGLS LIH++V + V +G P +SHLLFAD+ +F +A
Sbjct: 12 GLRQGDPLSPYLFILVVEGLSTLIHKEVNRGDIHGVKVCRGAPVVSHLLFADNCFLFCRA 71
Query: 1184 SVRXAKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYL 1243
+V A+ + +L + + + Q NL+KS ++FS++++ + +++GV GKYL
Sbjct: 72 NVVEAQRLLTILKTYEAASGQEINLSKSEVFFSRNMSGAAQEDLSRIIGVRHVMGTGKYL 131
Query: 1244 GVP-LYGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLP 1302
G+P + R S + I + GKEV+IK+ + S+P+Y+M+ LP
Sbjct: 132 GLPSMIDRDKWSVFSFIKDSIWKRINVWRGRALSKAGKEVMIKSVLQSIPSYIMSIYLLP 191
Query: 1303 SSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGW 1362
SS+ ++++ F+WG + + + W ++ P+ FGG+ FR+ + FNI ++ K GW
Sbjct: 192 SSVIDDIEKMVNAFWWGGRSNNRGIKWMAWEHMACPKEFGGMGFRNFKAFNIAMVAKQGW 251
Query: 1363 KLLVNDSDLXVQVLSLKY 1380
LL L +V +Y
Sbjct: 252 SLLSTPESLVARVFKSRY 269
>IMGA|Medtr7g047570.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
11971058-11973594 E EGN_Mt090430 20090702
Length = 628
Score = 163 bits (412), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/262 (33%), Positives = 147/262 (56%), Gaps = 4/262 (1%)
Query: 1070 EKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQGD 1129
+ YD ++W+F+ L+ G P +++IM +++ V WNG+ + FF+ GLRQGD
Sbjct: 369 RQTYDNLSWNFIHMTLLEVGLPMEMINVIMHSVTTVRTNVRWNGNRADFFTPKKGLRQGD 428
Query: 1130 PLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRXAK 1189
P+SPYLFV+ M+ LS LI + + K W+ + + GP ISHL+FADDL++FG+A+ +
Sbjct: 429 PISPYLFVICMDKLSHLISEAIDKGDWLDLKTGRTGPMISHLMFADDLLLFGQATDSQMR 488
Query: 1190 VVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVPLYG 1249
V +VL FC Q+ ++ K+ I+FS ++ V + + G ++LGKYLGVPL G
Sbjct: 489 GVMEVLNKFCHLLGQSISIQKTTIFFSSNVYRVTRRLLVDISGFRETTELGKYLGVPLTG 548
Query: 1250 RSSVSQ-YQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICGT 1308
++ + +Q ++ +V G+ L K+ I ++P +MN+ +P +
Sbjct: 549 KAPRRKDFQYLVNEVRNKLTAWKSNQFSFAGRVTLAKSVIEAIP--MMNS-VVPKAYVQE 605
Query: 1309 LDRLARNFYWGSSVEHCKMHLV 1330
+ ++ R F WG +H V
Sbjct: 606 IQKVQRAFIWGDKEVRKHIHAV 627
>IMGA|Medtr8g021900.1 contains similarity to reverse trancriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
4206337-4207793 E EGN_Mt090430 20090702
Length = 357
Score = 138 bits (347), Expect = 3e-32, Method: Composition-based stats.
Identities = 99/370 (26%), Positives = 155/370 (41%), Gaps = 72/370 (19%)
Query: 1069 LEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQG 1128
+EK YD+V W+FL L++ GF
Sbjct: 1 MEKAYDRVEWNFLEATLLTMGF-------------------------------------- 22
Query: 1129 DPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRXA 1188
P V + G+S+ ++ P ISHL FADD +IF +A+ A
Sbjct: 23 ----PKKLVSSIMGISI----------------ARNAPAISHLFFADDNMIFCRANKSEA 62
Query: 1189 KVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVPL- 1247
K + ++ ++ Q NL KS + FS +I V Q + + I + KYLG+P
Sbjct: 63 KHLKEIFDEYKRVLGQKINLNKSEMVFSPNIIQSVKKEFQDFMPIQITDSITKYLGLPTQ 122
Query: 1248 YGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICG 1307
GRS + I+++V G+ VLI+ I +LP YVM+ +P IC
Sbjct: 123 VGRSKTHTFNFIMERVRAKLKGWKERNLSFSGRGVLIRAVIQALPTYVMSMFLIPEGICD 182
Query: 1308 TLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVN 1367
+++ F+WG + + ++H ++L KP+ GG FR+ R FN LL K W+L+
Sbjct: 183 KIEQAICRFWWGGNEDRRRIHWKNKDFLFKPKFSGGQGFRTMRSFNEALLAKQVWRLIKY 242
Query: 1368 DSDLXVQVLSLKYCLGHSCPPAVQV-------SDSSTWKGIIRSFNTLQSHVRWRVGNGQ 1420
+ L CL P V S W I + ++ RW +G+G+
Sbjct: 243 PTSF------LATCLKAKHFPNTDVLKAKLGNQPSFVWSSIYHTKWIIKKGGRWLIGDGK 296
Query: 1421 QISXWYDSWL 1430
+I W D+WL
Sbjct: 297 KIDVWDDNWL 306
>IMGA|Medtr1g024000.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr01_pseudomolecule_IMGAG_V3
5513052-5515983 E EGN_Mt090430 20090702
Length = 591
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/379 (27%), Positives = 154/379 (40%), Gaps = 103/379 (27%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQ 1127
D+ K YDKV W FLR VL+ GF W+ W +
Sbjct: 159 DINKAYDKVGWGFLRGVLMRMGFNEKWIQ--------------------------WMMMC 192
Query: 1128 GDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRX 1187
GDPLSPYLF+L EGLS LIH+ V + + +G P +SHLLFADD +
Sbjct: 193 GDPLSPYLFILVDEGLSTLIHKAVNRGDIHGIQVCRGAPVVSHLLFADDYFL-------- 244
Query: 1188 AKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVPL 1247
FC N +W RI G A++
Sbjct: 245 ----------FCRANVDR-----------------IWKRINAWRGRALSK---------- 267
Query: 1248 YGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICG 1307
GKEV+IK+ + S+P+Y+M+ +PSS+
Sbjct: 268 ------------------------------AGKEVMIKSVLQSIPSYIMSIYLMPSSVID 297
Query: 1308 TLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVN 1367
++++ F+WG + + + W + P+ FGG+ F + + FNI ++ K GW L
Sbjct: 298 DIEKMINAFWWGGRSNNRGIKWMAWERMACPKEFGGMGFMNFKAFNIAMVAKQGWSFLSK 357
Query: 1368 DSDLXVQVLSLKYCLGHSCPPAVQVSDSS-TWKGIIRSFNTLQSHVRWRVGNGQQISXWY 1426
L +V +Y S A ++ S W+ I S L RW VGNGQQ+S
Sbjct: 358 LESLVARVFEARYFPRSSFLGAKLGNNLSFAWRSIWNSRQILLHGCRWTVGNGQQVSVMN 417
Query: 1427 DSWLSMGPLVDLLETLHEV 1445
D W+ G D+++ + +
Sbjct: 418 DPWVR-GVQDDMVQVILDT 435
>IMGA|Medtr3g016900.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
3397609-3394716 E EGN_Mt090430 20090702
Length = 703
Score = 133 bits (335), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 152/326 (46%), Gaps = 30/326 (9%)
Query: 1106 SLAVLWNGSPSSFFSQTWGLRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGG 1165
+ ++L NG P+ F G+RQGDPLSPYLF+L + LS LI + + +
Sbjct: 283 AFSILINGVPTPVFKPKRGIRQGDPLSPYLFILCADVLSGLITKYHDDNKLHGISIANNA 342
Query: 1166 PPISHLLFADDLIIFGKASVRXAKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWL 1225
P +SHL FADD ++F +A+ A+ + ++ AD+ S + Q NL KS + F+ ++ +
Sbjct: 343 PTLSHLTFADDSMVFCRANKSEAQNLMEIFADYQSISGQKINLNKSEMVFNSNLNQTIQT 402
Query: 1226 RIQQLLGVAIASDLGKYLGVPLYGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIK 1285
QQ + + I +++ KYLG+P Q + ++ + VLI+
Sbjct: 403 EFQQYMTIKITNNIDKYLGLPT---------QVLKNQI---FNFIMERNLSFSSRGVLIR 450
Query: 1286 TSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLX 1345
I ++P+Y L+ +F WG S E ++H L K + GG
Sbjct: 451 AVIQAIPSY-----------------LSVDFGWGGSEEKRRIHWKSKEVLFKSKFNGGQG 493
Query: 1346 FRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSS-TWKGIIRS 1404
FR+ FN L K W+L+ L + L KY A + + S W I +
Sbjct: 494 FRTMHHFNEALFAKQAWRLIHQPQTLISKCLKAKYYPHTDLLRARRGRNPSFVWSSIHHA 553
Query: 1405 FNTLQSHVRWRVGNGQQISXWYDSWL 1430
+Q W++GNG Q++ W D+W+
Sbjct: 554 EWVIQKGGCWKIGNGSQVNVWEDNWI 579
>IMGA|Medtr8g125530.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr08_pseudomolecule_IMGAG_V3
29296065-29298854 H EGN_Mt090430 20090702
Length = 693
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 142/298 (47%), Gaps = 22/298 (7%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQ 1127
D+ K YD+++W +L+ V+I G+ W+ IM + +V+ N GLRQ
Sbjct: 140 DISKAYDRIDWLYLKEVVIKIGYANRWIRWIMMCVESVDYSVIVNNESVGPIFPGEGLRQ 199
Query: 1128 GDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRX 1187
GDPLSPYLF+L EGLS LIHQ + + P ISHLLFA+D +F A R
Sbjct: 200 GDPLSPYLFILCAEGLSALIHQAERRGDIHGISICTNSPIISHLLFANDCFLFFMAEERE 259
Query: 1188 AKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVPL 1247
V+ ++L + + K +A R + + V + L K L +P
Sbjct: 260 VGVMKNILETY------------EKALLVKQLA----FRNMKFIIVGVFPTLLKTLSLPS 303
Query: 1248 YGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICG 1307
+ + + I K+ +EVL+K+ + S+P+Y+M+ LP+ +
Sbjct: 304 LVSALLWELDRIWHKINCWSSKCLSKAE----REVLMKSVLQSIPSYIMSVYLLPNKLVD 359
Query: 1308 TLDRLARNFYWGSSVEHCK-MHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKL 1364
++++ F+WG K +H + W L + +GG+ F+ F++ +LG + W++
Sbjct: 360 AIEKIINAFWWGHGGTTRKGLHWLSWKRLSVHKNYGGMGFKDLTSFHVAMLG-VRWRI 416
>IMGA|Medtr2g100610.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
23480965-23481815 H EGN_Mt090430 20090702
Length = 251
Score = 108 bits (271), Expect = 2e-23, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 2/159 (1%)
Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKP 1338
G+ L+K+ ++S+P Y M WLP S C ++DRLA NF W S + +++LVGW + KP
Sbjct: 32 GRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLAINFLWKGS-SNFRIYLVGWEKITKP 90
Query: 1339 RXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSSTW 1398
+ GGL R AR N +LLG+L W+L N L V+VL+ KY + S S TW
Sbjct: 91 KKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVKVLTHKYFHADKLLTVTRKSGSVTW 150
Query: 1399 KGIIRSFNTLQSHVRWRVGNGQQISXWYDSWLSMGPLVD 1437
I+++ TL+ +R+G+ S W+ +W +G L +
Sbjct: 151 NAIMKARFTLRDGFDFRLGDDNS-SFWFVNWSGIGKLTE 188
>IMGA|Medtr2g100360.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
23360766-23362551 H EGN_Mt090430 20090702
Length = 379
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 2/159 (1%)
Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKP 1338
G+ L+K+ ++S+P Y M WLP S C ++DRLA NF W S + +++LVGW + KP
Sbjct: 32 GRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLAINFLWKGS-SNFRIYLVGWEKITKP 90
Query: 1339 RXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSSTW 1398
+ GGL R AR N +LLG+L W+L N L V+VL+ KY + S S TW
Sbjct: 91 KKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVKVLTHKYFHADKLLTVTRKSGSVTW 150
Query: 1399 KGIIRSFNTLQSHVRWRVGNGQQISXWYDSWLSMGPLVD 1437
I+++ TL+ +R+G+ S W+ +W +G L +
Sbjct: 151 NAIMKARFTLRDGFDFRLGDDNS-SFWFVNWSGIGKLTE 188
>IMGA|Medtr2g100590.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
23474829-23476616 H EGN_Mt090430 20090702
Length = 477
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 2/159 (1%)
Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKP 1338
G+ L+K+ ++S+P Y M WLP S C ++DRLA NF W S + +++LVGW + KP
Sbjct: 32 GRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLAINFLWKGS-SNFRIYLVGWEKITKP 90
Query: 1339 RXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSSTW 1398
+ GGL R AR N +LLG+L W+L N L V+VL+ KY + S S TW
Sbjct: 91 KKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVKVLTHKYFHADKLLTVTRKSGSVTW 150
Query: 1399 KGIIRSFNTLQSHVRWRVGNGQQISXWYDSWLSMGPLVD 1437
I+++ TL+ +R+G+ S W+ +W +G L +
Sbjct: 151 NAIMKARFTLRDGFDFRLGDDNS-SFWFVNWSGIGKLTE 188
>IMGA|Medtr2g100330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
23354620-23355450 H EGN_Mt090430 20090702
Length = 276
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 2/159 (1%)
Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKP 1338
G+ L+K+ ++S+P Y M WLP S C ++DRLA NF W S + +++LVGW + KP
Sbjct: 32 GRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLAINFLWKGS-SNFRIYLVGWEKITKP 90
Query: 1339 RXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSSTW 1398
+ GGL R AR N +LLG+L W+L N L V+VL+ KY + S S TW
Sbjct: 91 KKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVKVLTHKYFHADKLLTVTRKSGSVTW 150
Query: 1399 KGIIRSFNTLQSHVRWRVGNGQQISXWYDSWLSMGPLVD 1437
I+++ TL+ +R+G+ S W+ +W +G L +
Sbjct: 151 NAIMKARFTLRDGFDFRLGDDNS-SFWFVNWSGIGKLTE 188
>IMGA|Medtr4g140270.1 RNA-directed DNA polymerase ; Ribonuclease H,
putative chr04_pseudomolecule_IMGAG_V3 34349081-34347530
H EGN_Mt090430 20090702
Length = 346
Score = 107 bits (266), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/159 (37%), Positives = 91/159 (57%), Gaps = 2/159 (1%)
Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKP 1338
G+ L+K+ ++S+P Y M WLP S C ++DRLA NF W S + +++LVGW + KP
Sbjct: 32 GRMTLVKSVLNSIPYYYMQVAWLPQSTCESIDRLAINFLWKGS-SNFRIYLVGWEKITKP 90
Query: 1339 RXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSSTW 1398
+ GGL R AR N +LLG+L W+L N L V+VL+ KY + S S TW
Sbjct: 91 KKLGGLEIRKAREANTSLLGRLVWRLHQNCDSLWVKVLTHKYFHADKLLTVTRKSGSVTW 150
Query: 1399 KGIIRSFNTLQSHVRWRVGNGQQISXWYDSWLSMGPLVD 1437
I+++ TL+ +R+G+ S W+ +W +G L +
Sbjct: 151 NAIMKARFTLRDGFDFRLGDDNS-SFWFVNWSGIGKLTE 188
>IMGA|Medtr4g079290.1 RNA-directed DNA polymerase (Reverse
transcriptase); Polynucleotidyl transferase, Ribonuclease
H fold chr04_pseudomolecule_IMGAG_V3 15868030-15871357 E
EGN_Mt090430 20090702
Length = 845
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 99/197 (50%), Gaps = 13/197 (6%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQ 1127
D+ K YD+++W +L+ V++ GF WV IM + +V+ N
Sbjct: 263 DISKAYDRIDWLYLKEVMLKMGFDSKWVQQIMMCVETVDYSVIVNNE------------L 310
Query: 1128 GDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRX 1187
GDPLSPYLF+L EGLS LI + V P ISHLLFADD +F K
Sbjct: 311 GDPLSPYLFILCDEGLSALIRKAERSGDLHGVSICTNAPTISHLLFADDCFLFFKVDDNE 370
Query: 1188 AKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVP- 1246
A+V+ ++L + + QT +L K ++FS + + I +LGV GKYLG+P
Sbjct: 371 AQVMKNILHTYELASGQTISLPKYEVFFSTVVPLPLKETITNILGVRAVMGTGKYLGLPS 430
Query: 1247 LYGRSSVSQYQSIIQKV 1263
+ GRS + + I ++
Sbjct: 431 MVGRSKEATFGFIKDRI 447
>IMGA|Medtr2g111130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
26299553-26300277 H EGN_Mt090430 20090702
Length = 207
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 88/166 (53%), Gaps = 18/166 (10%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQ 1127
D+ K YD+V+ +LR VL+ GF +L N GLRQ
Sbjct: 60 DISKAYDRVDGGYLRGVLMRMGF------------------MLMNFDRVGPIVPGRGLRQ 101
Query: 1128 GDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRX 1187
DPLSPYLF+L EGLS LIH+ V + V G P +SHLLFADD +F +A+V
Sbjct: 102 ADPLSPYLFILVAEGLSTLIHKAVNRGGIHGVQVCCGAPLVSHLLFADDCFLFCRANVVE 161
Query: 1188 AKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGV 1233
A+ + +L + + Q NL+KS ++FS++++ + +++GV
Sbjct: 162 AQRLLTILKTYEVASGQEINLSKSEVFFSRNMSGAAQEDLSRIIGV 207
>IMGA|Medtr7g107300.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
25061037-25062481 E EGN_Mt090430 20090702
Length = 407
Score = 97.4 bits (241), Expect = 5e-20, Method: Composition-based stats.
Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 4/219 (1%)
Query: 1215 FSKSIAHVVWLRIQQLLGVAIASDLGKYLGVPL-YGRSSVSQYQSIIQKVEXXXXXXXXX 1273
FS +I+ IQ+ L V I+ + KYLG+P +GRS + I++++
Sbjct: 3 FSPNISQEFKEEIQKHLHVKISDGIQKYLGMPTQFGRSKEQDFHFIMERIWKKHKGWKKK 62
Query: 1274 XXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWN 1333
G+ VLIK ++P Y M+ LP +C +++ +F+WG++ ++ KMH V
Sbjct: 63 CLSFEGRGVLIKAVAQAIPTYYMSCFMLPKGLCTKIEKAICSFWWGTTDKNKKMHWVSKK 122
Query: 1334 YLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVS 1393
L + + GGL F++ R FN+ +L K + N + L + Y H+ +V
Sbjct: 123 KLFRSKHSGGLGFKTLRDFNLAMLAKKVRRFYTNPNSLIAKCFKANY-YPHTDILQAKVG 181
Query: 1394 D--SSTWKGIIRSFNTLQSHVRWRVGNGQQISXWYDSWL 1430
+ S WK I + + WR+G+G I+ W D+W+
Sbjct: 182 NYPSYAWKSIQNAIWVISKGSCWRIGDGGSINIWEDNWV 220
>IMGA|Medtr3g009340.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
1329629-1330366 H EGN_Mt090430 20090702
Length = 245
Score = 93.6 bits (231), Expect = 7e-19, Method: Composition-based stats.
Identities = 49/116 (42%), Positives = 68/116 (58%)
Query: 1069 LEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQG 1128
+ K YDKV W FL ++ GFP +VS IM ++ + ++L +GS S F GLRQG
Sbjct: 129 MAKAYDKVEWTFLEATMLKMGFPHQFVSTIMRCVTTVTFSILIDGSNSKEFQPQRGLRQG 188
Query: 1129 DPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKAS 1184
DPLSPYLF++ ++ S LI++ K V G P I+HL FAD + F KA+
Sbjct: 189 DPLSPYLFIICVDVFSELINKANNNKLIHGVKIVNGAPEITHLFFADANLTFCKAT 244
>IMGA|Medtr3g097870.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
23554745-23554236 H EGN_Mt090430 20090702
Length = 169
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 75/138 (54%)
Query: 1109 VLWNGSPSSFFSQTWGLRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPI 1168
VL NG + GLRQGDPLSPYLF+L EGLS L+ + + V +G P +
Sbjct: 12 VLVNGESVGPINPKRGLRQGDPLSPYLFILCAEGLSALLRRAETRGDIHGVKVCRGAPLL 71
Query: 1169 SHLLFADDLIIFGKASVRXAKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQ 1228
+HLLFA D +F ++S+ + +VL + S Q + KS I+F K+ + I+
Sbjct: 72 THLLFAYDCFLFCRSSIMKCTKIKEVLHVYESVTGQAIHFEKSEIFFGKNTSQADRKAIK 131
Query: 1229 QLLGVAIASDLGKYLGVP 1246
LL V+ GKYLG+P
Sbjct: 132 NLLQVSANMGNGKYLGMP 149
>IMGA|Medtr4g084360.1 Putative ribonuclease H protein At1g65750,
chr04_pseudomolecule_IMGAG_V3 17721962-17723166 E
EGN_Mt090430 20090702
Length = 188
Score = 92.8 bits (229), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 23/175 (13%)
Query: 1203 SQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVPLY-GRSSVSQYQSIIQ 1261
S TNL I FSK++A + I Q+LG+ KYLGVP + G+S ++ S
Sbjct: 36 STLTNL----IIFSKNVADIEQSNIIQILGMKKVEGFSKYLGVPTHMGKSKRQKHLSF-- 89
Query: 1262 KVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSS 1321
G+ LIK ++P Y+M+ LP + C LDR+ +F+WGS+
Sbjct: 90 ----------------AGRSTLIKAVSQAIPTYIMSGFLLPKNFCQQLDRVICDFWWGSN 133
Query: 1322 VEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVL 1376
+ + H + W L K + GGL FR+ R FNI LL K W++ + L +VL
Sbjct: 134 TDSKRTHWIKWEKLCKAKKNGGLGFRNLRAFNIALLAKQIWRIQTQNQSLMAKVL 188
>IMGA|Medtr8g034900.1 contains similarity to reverse trancriptase,
related, putative chr08_pseudomolecule_IMGAG_V3
7642559-7645649 E EGN_Mt090430 20090702
Length = 541
Score = 89.7 bits (221), Expect = 1e-17, Method: Composition-based stats.
Identities = 53/192 (27%), Positives = 85/192 (44%), Gaps = 17/192 (8%)
Query: 1248 YGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICG 1307
+GRS + I+ ++ G+ LI+ ++P YVM+ LP +C
Sbjct: 5 FGRSKEQDFHFIMDRIWKKLKGWKEKSLSFEGRGTLIRAIAQAIPTYVMSCFLLPKGLCE 64
Query: 1308 TLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVN 1367
+++ F+WG S K+H L KPR GG+ F+ R FN+ +L K W+ N
Sbjct: 65 KIEKAVCAFWWGGSDSKRKIHWTKKENLFKPRHKGGMGFKILRDFNMAMLAKQVWRFQTN 124
Query: 1368 DSDLXVQVLSLKYC---------LGHSCPPAVQVSDSSTWKGIIRSFNTLQSHVRWRVGN 1418
L +V KY LG++ S W+ I S +Q W++GN
Sbjct: 125 QKSLISRVFKAKYFPYQDILQTNLGYNL--------SYAWRSIFHSIWVIQKGSCWKIGN 176
Query: 1419 GQQISXWYDSWL 1430
GQ++ W D+W+
Sbjct: 177 GQKVRIWEDNWI 188
>IMGA|Medtr5g088260.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
34193929-34195112 H EGN_Mt090430 20090702
Length = 373
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 96/201 (47%), Gaps = 29/201 (14%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWN----GSPSSFFSQTW 1123
D+ K YD+++W +L+ V+I GF WV+ IM + +VL N G P
Sbjct: 191 DISKAYDRIDWLYLKEVMIKMGFCHRWVNWIMMCIETVDYSVLVNQKLVGPP---IIPGR 247
Query: 1124 GLRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKA 1183
GL+QGDPLSPYLF+L +EGLS LI Q + G +S
Sbjct: 248 GLQQGDPLSPYLFILCVEGLSALIRQAEAR-------GELHGAKVS-------------- 286
Query: 1184 SVRXAKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYL 1243
+ A + +LA + + Q +L KS IY+S++ V I +LGV KYL
Sbjct: 287 TETEAHTMKTILAIYEVASGQAISLPKSEIYYSRNTGADVQNNITSILGVQAVLGTSKYL 346
Query: 1244 GVP-LYGRSSVSQYQSIIQKV 1263
G+P + GRS S + I +V
Sbjct: 347 GLPSMIGRSKKSTFNFIKDRV 367
>IMGA|Medtr3g024790.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
6317912-6319402 H EGN_Mt090430 20090702
Length = 456
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 148/348 (42%), Gaps = 55/348 (15%)
Query: 1107 LAVLWNGSPSSFFSQTWGLRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGP 1166
+++ NGS +F G+RQGDPLSP LF E LS I + V + AS+
Sbjct: 1 MSISINGSQRGYFKCARGVRQGDPLSPLLFCSAEEVLSRGILKLVDDGKVELIKASRDTQ 60
Query: 1167 PISHLLFADDLIIFGKASVRXAKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLR 1226
SH +ADDL+++ K + + + D+ + S + Q NL KS I FS +++ +
Sbjct: 61 IPSHCFYADDLMVYCKGKLYSLEALKDLFTRYASCSGQVINLGKSFI-FSGGVSNNMLST 119
Query: 1227 IQQLLGVAIASDLGKYLGVPLY-GRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIK 1285
+ LLG I S YLG P++ G+ + +Q I K++ G+ L+K
Sbjct: 120 MVNLLGFNIGSLSFTYLGAPIFKGKPNTIHFQPIADKIKLKLASWKAYLLSIAGRVQLVK 179
Query: 1286 TSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLX 1345
+ + + V C LD +G LI
Sbjct: 180 SVVQGMMKRV----------CADLDE----------------RRLGTKSLIC-------- 205
Query: 1346 FRSARLFNITLLGKLGWKLLVNDSDLXV----QVLSLKYCLGHSCPPAVQVSDSSTWKGI 1401
L T L KL W +L ++ V + L YC+ H +++ GI
Sbjct: 206 -----LSEATNL-KLCWDVLHSNETWAVIIRSRTLRGTYCIHHHIYSSIR-------SGI 252
Query: 1402 IRSFNTLQSHVRWRVGNGQQISXWYDSWLSMGPLVDLLE-TLHEVRSI 1448
+ FNT++ + W V NG I W DSW PL+ L +L++++++
Sbjct: 253 KQEFNTIKENTSWLVENGDNIQFWLDSWCR-KPLIQALNLSLNQIQNL 299
>IMGA|AC233572_22.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233572.2 97249-98280 H EGN_Mt090430
20090702
Length = 258
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 117/263 (44%), Gaps = 58/263 (22%)
Query: 1094 WVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQGDPLSPYLFVLYMEGLSLLIHQQVVK 1153
W+S+ M++++ V+ NG GLRQGDPLSPYLF++ +EGLS + + +
Sbjct: 13 WMSMCMNSVN---YQVIVNGERVRPIIPKRGLRQGDPLSPYLFIICVEGLSAQLKKAEAR 69
Query: 1154 KSWIPVFASKGGPPISHLLFADDLIIFGKASVRXAKVVHDVLADFCSGNSQTTNLAKSRI 1213
V +G ++HLLFADD IF KA+++ + + ++L + + + Q N K I
Sbjct: 70 VDIHGVKLCRGALILTHLLFADDCFIFCKANMQESIKLKEILQSYEAMSEQAINFRKPEI 129
Query: 1214 YFSKSIAHV-------------VWLRIQQLLGVAIASDLGKYLGVPLYGRSSVSQYQSII 1260
FSK+ + VW +IQQ G ++
Sbjct: 130 -FSKNTSEADRSQENFGYLRDGVWRKIQQWFGKHLSK----------------------- 165
Query: 1261 QKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGS 1320
G+EVLIK ++P Y M+T LP+++ + + +F+WG
Sbjct: 166 -----------------AGREVLIKFVTQAIPTYCMSTFLLPTTLGEEIQIMINSFWWGL 208
Query: 1321 SVEHCK-MHLVGWNYLIKPRXFG 1342
+ K + + W+ L + +G
Sbjct: 209 NRRQGKGIDWLSWDKLTTRKEYG 231
>IMGA|Medtr7g068060.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr07_pseudomolecule_IMGAG_V3
13863857-13863375 E EGN_Mt090430 20090702
Length = 116
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 62/116 (53%)
Query: 1069 LEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQG 1128
+ K YD++NW++LR V++ GF W IM + VL N GLR+G
Sbjct: 1 MSKAYDRINWEYLRRVMLRLGFDAKWFGWIMMCVESVKYKVLVNQESEGPILPGSGLRKG 60
Query: 1129 DPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKAS 1184
DPLSPYLF+L +GL+ LI + + V G P +HLLF DD +F +A+
Sbjct: 61 DPLSPYLFILCAQGLTSLIDKAEGRGDLHGVRVCTGAPTFTHLLFVDDCFLFCRAT 116
>IMGA|AC233685_57.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC233685.2 242381-241350 H EGN_Mt090430
20090702
Length = 268
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/250 (27%), Positives = 119/250 (47%), Gaps = 22/250 (8%)
Query: 1094 WVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQGDPLSPYLFVLYMEGLSLLIHQQVVK 1153
W+S+ M++++ V+ NG GLRQGDPLSPYLF++ +EGLS + + +
Sbjct: 13 WMSMCMNSVN---YQVIVNGERVRPIIPKRGLRQGDPLSPYLFIICVEGLSAQLKKAEAR 69
Query: 1154 KSWIPVFASKGGPPISHLLFADDLIIFGKASVRXAKVVHDVLADFCSGNSQTTNLAKSRI 1213
V +G ++HLLFADD IF KA+++ + + ++L + + + Q N K I
Sbjct: 70 VDIHGVKLCRGALILTHLLFADDCFIFCKANMQESIKLKEILQSYEAMSEQAINFRKPEI 129
Query: 1214 YFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVPLYGRSSVSQYQSIIQKVEXXXXXXXXX 1273
FSK+ + R Q + +Y +G ++ I Q
Sbjct: 130 -FSKNTSEAD--RSQSKMSY-------RYKKRENFGYLRDGVWRKIQQ--------WFGK 171
Query: 1274 XXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCK-MHLVGW 1332
G+EVLIK ++P Y M+T LP+++ + + +F+WG + K + + W
Sbjct: 172 HLSKAGREVLIKFVTQAIPTYCMSTFLLPTTLGEEIQIMINSFWWGLNRRQGKGIDWLSW 231
Query: 1333 NYLIKPRXFG 1342
+ L + +G
Sbjct: 232 DKLTTRKEYG 241
>IMGA|AC225611_8.1 contains similarity to reverse trancriptase,
related, putative AC225611.10 67770-68780 H EGN_Mt090430
20090702
Length = 336
Score = 83.6 bits (205), Expect = 7e-16, Method: Composition-based stats.
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 7/187 (3%)
Query: 1248 YGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICG 1307
+GRS + ++ ++ G+ VLI+ ++P Y+M+ LP SIC
Sbjct: 5 FGRSKEQDFNFLMDRIWKKLKGWKEKSLSFEGRGVLIRVVAQAIPTYIMSCFLLPKSICD 64
Query: 1308 TLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVN 1367
++R +F+WGS+ K+H + ++L K + GG+ FR+ R FN+ +L K W+L
Sbjct: 65 RIERAICSFWWGSNETKRKIHWIKKDHLFKFKHDGGMGFRNLRDFNLAMLAKQVWRLHTQ 124
Query: 1368 DSDLXVQVLSLKYCLGHSCPPAVQVSD----SSTWKGIIRSFNTLQSHVRWRVGNGQQIS 1423
L + +Y + +QVS S W+ I +S + R+GNG
Sbjct: 125 PQSLIARCYKARY---YPNSDVLQVSQGYNPSYAWRSISQSIWIINKGSCKRIGNGYNTK 181
Query: 1424 XWYDSWL 1430
W D+W+
Sbjct: 182 IWEDNWI 188
>IMGA|Medtr3g025680.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
6753317-6752601 H EGN_Mt090430 20090702
Length = 238
Score = 82.8 bits (203), Expect = 1e-15, Method: Composition-based stats.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 2/191 (1%)
Query: 1247 LYGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSIC 1306
+ GRS ++ I +V GKEV+IK+++ S+P Y M+ +PSS+
Sbjct: 1 MIGRSKKDMFKFIKDQVWRKINSWGGRSLSKAGKEVMIKSALQSIPTYFMSIFLIPSSLG 60
Query: 1307 GTLDRLARNFYWGSSVEHCK-MHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLL 1365
++++ +F+WG+ K + + W L + GG+ F++ +FN+ LLGK W+L+
Sbjct: 61 DEIEKMMNSFWWGNGGNRNKGIRWLSWYKLYVHKRSGGMGFKNLYMFNMALLGKQVWRLM 120
Query: 1366 VNDSDLXVQVLSLKYCLGHSCPPAVQVSDSS-TWKGIIRSFNTLQSHVRWRVGNGQQISX 1424
L ++ +Y + A + ++SS WK I + ++ RW++G +I
Sbjct: 121 CQPELLIARLFKARYYQRNDIFEAKKGNNSSYVWKSIHEAIPMVKQGTRWKIGKKDKIRV 180
Query: 1425 WYDSWLSMGPL 1435
+ D WL G L
Sbjct: 181 FQDRWLMNGGL 191
>IMGA|Medtr5g030050.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr05_pseudomolecule_IMGAG_V3
12585358-12584747 H EGN_Mt090430 20090702
Length = 203
Score = 82.8 bits (203), Expect = 1e-15, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 81/164 (49%)
Query: 1080 FLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQGDPLSPYLFVLY 1139
+L+ V+ F WV IM + +V+ N GLRQGDPLSPYLF+L
Sbjct: 38 YLKEVMQKLEFANRWVRWIMMCVETDDYSVIVNNESVGPIFLGRGLRQGDPLSPYLFILC 97
Query: 1140 MEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRXAKVVHDVLADFC 1199
EG LIH+ ++ + P ISHLLFADD +F + A ++ +L +
Sbjct: 98 AEGHLALIHKGEWREDMHDISICTNAPVISHLLFADDCFLFFWLNEIEAHMMKHILEIYE 157
Query: 1200 SGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYL 1243
+ +SQ NL KS +Y++ +++ + I L V GKYL
Sbjct: 158 AVSSQAINLPKSEVYYNHNVSAPLKDFITTTLDVRAVMGTGKYL 201
>IMGA|Medtr1g084160.1 Ribonuclease H chr01_pseudomolecule_IMGAG_V3
16870634-16874775 H EGN_Mt090430 20090702
Length = 651
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 3/129 (2%)
Query: 1310 DRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVNDS 1369
+R R F WG + H +HL W + P+ + GL R+A N+T + K+GW L
Sbjct: 32 NRGFRGFIWGDTPSHRHVHLASWASICTPKSYAGLGLRTACDMNLTAMMKVGWSLSHKKD 91
Query: 1370 DLXVQVLSLKYCLGHSCPPAVQVSD--SSTWKGIIRSFNTLQSHVRWRVGNGQQISXWYD 1427
V+++ KY G+ P +Q + S+ W+GI R++ + ++ WRVG G I+ W D
Sbjct: 92 AFWVKIIKAKYRCGNDIMPRIQTNKAGSNLWRGICRNWEKVTPNLIWRVGQGDNINFWSD 151
Query: 1428 SWLS-MGPL 1435
W+ GPL
Sbjct: 152 MWVPGAGPL 160
>IMGA|Medtr4g159490.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
40247310-40247920 H EGN_Mt090430 20090702
Length = 187
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 56/99 (56%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQ 1127
D+ K YD+V+W FLR VL+ GF W+ +M +S + +VL N GLRQ
Sbjct: 76 DISKAYDRVDWGFLRGVLMRMGFSEKWIQWMMMCVSSVTYSVLTNFDRVGPIVPGRGLRQ 135
Query: 1128 GDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGP 1166
GDPLSPYLF+L EGLS LIH+ V V +G P
Sbjct: 136 GDPLSPYLFILVAEGLSTLIHKIVNSGDIHGVQVCRGAP 174
>IMGA|Medtr2g034130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 9482517-9480709 E
EGN_Mt090430 20090702
Length = 602
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 76/153 (49%), Gaps = 1/153 (0%)
Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKP 1338
G+ VLI+ ++P YVM+ LP S+C ++R NF+WG + K+H V L K
Sbjct: 20 GRGVLIRAVAQAIPVYVMSCYLLPISLCEDIERAVCNFWWGGTEHTRKIHWVSKQILFKQ 79
Query: 1339 RXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQ-VSDSST 1397
+ GG+ F+ R FN+ +L K W+L + L + L KY A + S
Sbjct: 80 KKEGGMGFKILRDFNLAMLAKQIWRLHIYPDSLLAKCLKAKYYPNSDVLKATAGYNPSYA 139
Query: 1398 WKGIIRSFNTLQSHVRWRVGNGQQISXWYDSWL 1430
W+ + +S L WR+GNG Q+ D+WL
Sbjct: 140 WRSLQKSIWILNKGCCWRIGNGDQVHIQSDNWL 172
>IMGA|Medtr3g044190.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
12265782-12266442 H EGN_Mt090430 20090702
Length = 195
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 22/160 (13%)
Query: 1301 LPSSICGTLDRLARNFYWGSSVEHCK-MHLVGWNYLIKPRXFGGLXFRSARLFNITLLGK 1359
LPSS+C ++++ +F+WG S H K +H + W+ L + GG+ F+S FN+ +LGK
Sbjct: 6 LPSSLCDEIEKMMNSFWWGHSGSHRKGIHRMSWDKLSMHKKDGGMSFKSLGTFNMAMLGK 65
Query: 1360 LGWKLLVNDSDLXVQVLSLKY---------CLGHSCPPAVQVSDSSTWKGIIRSFNTLQS 1410
GW++L L ++ +Y LGH + S W+ I +S L++
Sbjct: 66 QGWRILTKPDTLIARIYKARYFPRCNFLEAELGH--------NPSFVWRSICKSKFILRA 117
Query: 1411 HVRWRVGNGQQISXWYDSWL----SMGPLVDLLETLHEVR 1446
RW++G+G IS W + W+ ++ PL D+ TL +R
Sbjct: 118 GSRWKIGDGTSISVWNNYWMKDNVTIFPLDDVATTLANLR 157
>IMGA|Medtr3g061320.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr03_pseudomolecule_IMGAG_V3
13555953-13554878 H EGN_Mt090430 20090702
Length = 318
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQ 1127
D EK +D +NW +L V+ +P LW IM +S S +VL NGSP+ F GLRQ
Sbjct: 222 DFEKAFDSINWSYLEAVMKKMNYPTLWRKWIMECVSTASTSVLVNGSPTDEFKLERGLRQ 281
Query: 1128 GDPLSPYLFVLYMEGLSLLIH 1148
GDP SP+LF++ EGL++++
Sbjct: 282 GDPFSPFLFLIAAEGLNVMMK 302
>IMGA|Medtr2g111140.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr02_pseudomolecule_IMGAG_V3
26300425-26300964 H EGN_Mt090430 20090702
Length = 179
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 1/149 (0%)
Query: 1283 LIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFG 1342
+IK + S+P+Y+M+ LP+S+ ++++ F+WG + + + W + P+ FG
Sbjct: 1 MIKYVLQSIPSYIMSIYLLPNSVIDDIEKMINAFWWGGRSNNRGIKWMAWERVACPKEFG 60
Query: 1343 GLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSS-TWKGI 1401
G+ FR+ + FNI ++ K GW L L ++ +Y S A ++ S W+ I
Sbjct: 61 GMRFRNFKAFNIAMVAKQGWSFLSKPDSLVARIFKSRYFPRSSFLGAKLGNNPSFAWRSI 120
Query: 1402 IRSFNTLQSHVRWRVGNGQQISXWYDSWL 1430
S L RW +G+GQQ+S D W+
Sbjct: 121 WNSCQLLLYGCRWTIGDGQQVSVMNDPWV 149
>IMGA|Medtr6g024980.1 Putative ribonuclease H protein At1g65750,
chr06_pseudomolecule_IMGAG_V3 5466766-5467589 H
EGN_Mt090430 20090702
Length = 259
Score = 78.2 bits (191), Expect = 3e-14, Method: Composition-based stats.
Identities = 68/225 (30%), Positives = 105/225 (46%), Gaps = 19/225 (8%)
Query: 1227 IQQLLGVAIASDLGKYLGVPLY-GRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIK 1285
IQ + + +DLG L PL GR S + Y +++ KV G+ L+K
Sbjct: 10 IQDISTIIFVADLGHCLCFPLIKGRVSRNVYNNVVDKVLKRLATWKGNILNKAGRACLVK 69
Query: 1286 TSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLX 1345
+ +++P + K P + G D L+R W V WN + P+ FGGL
Sbjct: 70 SVTTAIPVR-YDGKEFP--LGG--DGLSRT--WNH---------VNWNMVTTPKRFGGLG 113
Query: 1346 FRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSS-TWKGIIRS 1404
R ARL ++ LL KL W +L N L V+VLS KY S + + S T +GI+ +
Sbjct: 114 IREARLTDLALLSKLVWNMLHNKDKLWVKVLSHKYLYNTSLWMNKKHNKPSITCRGILHA 173
Query: 1405 FNTLQSHVRWRVGNGQQISXWYDSWLSMGPLVDLLETLHEVRSIL 1449
+ +RVG+G S W + W +GPL L+ ++ S++
Sbjct: 174 ITSFAPGYNFRVGSGDS-SIWNNDWTQLGPLCQLVPFVNISDSVM 217
>IMGA|Medtr4g021840.1 RNA-directed DNA polymerase, related, putative
chr04_pseudomolecule_IMGAG_V3 4275704-4277642 H
EGN_Mt090430 20090702
Length = 171
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 2/163 (1%)
Query: 1150 QVVKKSWIPVFAS-KGGPPISHLLFADDLIIFGKASVRXAKVVHDVLADFCSGNSQTTNL 1208
+ V K IP + + GP +SHLLFADD IF +A V + + +L ++ + Q NL
Sbjct: 3 KAVVKGDIPGIKNFRRGPAVSHLLFADDCFIFCRAKVNEVQHLISILREYEEASGQQVNL 62
Query: 1209 AKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGVP-LYGRSSVSQYQSIIQKVEXXX 1267
AKS ++F +++ + +LGV A G YLG+P + GRS + + I K+
Sbjct: 63 AKSEVFFGNNMSQAAKQDLANILGVKHALGTGTYLGLPSMVGRSKKATFGYIKDKIWRKI 122
Query: 1268 XXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICGTLD 1310
GKE +IK+ + +P+Y+M+ L + D
Sbjct: 123 NSWRGRSLSKSGKETMIKSVLQLIPSYIMSCSNLKRDMFDQND 165
>IMGA|Medtr8g105650.1 reverse transcriptase, putative; 100033-105622,
related chr08_pseudomolecule_IMGAG_V3 23385469-23384651 H
EGN_Mt090430 20090702
Length = 244
Score = 76.3 bits (186), Expect = 1e-13, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 27/183 (14%)
Query: 1248 YGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAYVMNTKWLPSSICG 1307
+GRS + I+ ++ G+ LI+ ++P YVM+ LP +C
Sbjct: 5 FGRSKEHDFHFIMDRIWKKLKGWKEKSLSFEGRGTLIRAVAQAIPTYVMSCFLLPKGLCE 64
Query: 1308 TLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVN 1367
++++ F+WG + K+H L KPR GG+ F+ R FN+ +L K
Sbjct: 65 KIEKVVCAFWWGGTDSKKKIHWTKRENLFKPRHKGGMGFKILRDFNMAMLAK-------- 116
Query: 1368 DSDLXVQVLSLKYCLGHSCPPAVQVSDSSTWKGIIRSFNTLQSHVRWRVGNGQQISXWYD 1427
+ LG+ S S W+ I S +Q W++GNGQ++ W D
Sbjct: 117 -----------QANLGY--------SPSYAWRSIFHSIWVIQKGSCWKIGNGQKVRIWED 157
Query: 1428 SWL 1430
+W+
Sbjct: 158 NWI 160
>IMGA|Medtr3g138250.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
35324945-35323011 H EGN_Mt090430 20090702
Length = 613
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 2/196 (1%)
Query: 1228 QQLLGVAIASDLGKYLGVPLY-GRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKT 1286
Q L + I++++ KYLG+P + G S +Q ++ +V G+ +LI+
Sbjct: 8 QANLPIKISNNIQKYLGMPTHLGMSKEQDFQFLMDRVWNKLKGWKEKSLSFEGRGILIRA 67
Query: 1287 SISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXF 1346
++ Y+M+ LP +C +++ F+WGS+ K+H L K + GG+ F
Sbjct: 68 VAQAISTYIMSCFLLPKGLCDKIEKAVCAFWWGSTDNKRKIHWTKKENLFKSKLEGGMGF 127
Query: 1347 RSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSS-TWKGIIRSF 1405
R FN+ +L K W+ + L + KY + A ++ S W+ I +
Sbjct: 128 NILRDFNLAMLAKQDWRFHTEPNSLISRCYKAKYYPHCNVLQATIGNNPSYAWRSIFNAL 187
Query: 1406 NTLQSHVRWRVGNGQQ 1421
++ WR+GNGQ+
Sbjct: 188 WIIKKGSCWRIGNGQE 203
>IMGA|Medtr4g160830.1 Putative ribonuclease H protein At1g65750,
chr04_pseudomolecule_IMGAG_V3 40910518-40909919 H
EGN_Mt090430 20090702
Length = 199
Score = 73.6 bits (179), Expect = 7e-13, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKP 1338
G+ VLI+ +P Y M+ LP +C ++R+ +F+WGS+ K+H L K
Sbjct: 20 GRGVLIRAVTQVIPTYYMSCFLLPKGLCEKIERVVCSFWWGSTNTKKKIHWKNKEILFKF 79
Query: 1339 RXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSS-- 1396
+ GG+ F+S R FNI +L K W+ N + L + KY H+ + ++
Sbjct: 80 KHDGGMVFKSLRDFNIAMLAKQVWRFHTNLNTLIAKCFKSKY-YPHTDILEADLGNNPNY 138
Query: 1397 TWKGIIRSFNTLQSHVRWRVGNGQQISXWYDSWL 1430
W+ I + + WRVG G I W D+W+
Sbjct: 139 AWRSIQNAIWPILKGSCWRVGKGDNIRIWDDNWI 172
>IMGA|CU179634_33.1 RNA-directed DNA polymerase (Reverse
transcriptase) CU179634.6 121572-121327 H EGN_Mt090430
20090702
Length = 81
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQ 1127
D++K YD +NW+FL ++ GF W+ I +S +VL N + FFS GLRQ
Sbjct: 5 DIQKAYDHLNWNFLLKLMEKMGFAFRWIKWIEHCISTVKFSVLINRETNGFFSSQRGLRQ 64
Query: 1128 GDPLSPYLFVLYMEGLS 1144
GDPLSP+LF++ MEG S
Sbjct: 65 GDPLSPFLFIMGMEGSS 81
>IMGA|Medtr5g048900.1 hypothetical protein
chr05_pseudomolecule_IMGAG_V3 20796455-20799403 H
EGN_Mt090430 20090702
Length = 547
Score = 70.1 bits (170), Expect = 9e-12, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 62 LYIQKXKPSFQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALAT 121
L + + P F PS + ++ +W+R P+E++ D +LF A A+GTPI I T +
Sbjct: 195 LRLSRWSPDFNPSNQTQTNSQVWVRFHYLPLEYWQDRILFEIAGAIGTPIIIDENTRNNS 254
Query: 122 GGRFARVCVELNLAQPLIPRVFVGGAWR-----RVEYEGIISACSSCGRVGHRSESCSDA 176
G +ARV V++N A IP +EY+ C +C +GH + C
Sbjct: 255 FGHYARVLVDINFAG-FIPDTLCVERANFAFDIEIEYDNPPYFCFTCNSIGHSMDHCKKD 313
Query: 177 TVDVVEAVKEAPTSLNNIVQ 196
+ + +E ++ +N+V+
Sbjct: 314 HANKI--AREKMSTKDNLVK 331
>IMGA|Medtr2g049290.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr02_pseudomolecule_IMGAG_V3
13465118-13466957 H EGN_Mt090430 20090702
Length = 509
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 85/168 (50%), Gaps = 2/168 (1%)
Query: 1098 IMSALSXFSLAVLWNGSPSSFFSQTWGLRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWI 1157
I++ L L++ NG FF T G+RQGDPLSP LF + E LS I + VV+
Sbjct: 279 IITILHSARLSININGKSVGFFKCTRGVRQGDPLSPILFCIAEEVLSRGIEELVVRGRMT 338
Query: 1158 PVFASKGGPPISHLLFADDLIIFGKASVRXAKVVHDVLADFCSGNSQTTNLAKSRIYFSK 1217
+ A++ SH L+ADD++IF K ++ K + +L + + + Q N KS+ Y +
Sbjct: 339 QIRATRSLYIPSHCLYADDILIFCKGTLANVKNLMHLLEGYGNYSGQLINAQKSKFY-TG 397
Query: 1218 SIAHVVWLRIQQLLGVAIASDLGKYLGVPLYGRSSVSQY-QSIIQKVE 1264
SI I L G + YLG+ L+ S Y + I+ K++
Sbjct: 398 SIPLSKINAICSLTGFSQGCIPLNYLGILLFKGKPKSIYLKPIVDKIQ 445
>IMGA|Medtr1g039870.1 non-LTR retrolelement reverse
transcriptase-like protein, related, putative
chr01_pseudomolecule_IMGAG_V3 9232263-9233344 H
EGN_Mt090430 20090702
Length = 342
Score = 67.0 bits (162), Expect = 8e-11, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 9/122 (7%)
Query: 71 FQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALATGGRFARVCV 130
F T + +WIRL+E P EF+ D L ASA+GT + I T G +ARV V
Sbjct: 157 FSARTQRQTHAQVWIRLLELPQEFWMDRTLREIASAIGTLLLIDSATQNRVFGHYARVLV 216
Query: 131 ELNLAQPLIPRVFV---GGAWR-RVEYEGIISACSSCGRVGHRSESCSDATVDVVEAVKE 186
+++L++ + V + G ++ + YE + C+ CG +GH + SC + VKE
Sbjct: 217 DMDLSKHIFNEVMIERTGFSFAIGISYERLPVFCTHCGNIGHHTSSCR-----WLHPVKE 271
Query: 187 AP 188
P
Sbjct: 272 IP 273
>IMGA|Medtr2g114260.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 26977303-26977923 H
EGN_Mt090430 20090702
Length = 178
Score = 66.6 bits (161), Expect = 9e-11, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 84/199 (42%), Gaps = 32/199 (16%)
Query: 1228 QQLLGVAIASDLGKYLGVPL-YGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKT 1286
Q +L + I++ + KYLG+ +GRS + + ++ G+ LI+
Sbjct: 8 QSILPIKISTSIQKYLGITTHFGRSKEQDFNFLKDRIWKKLKGWKEKSVSFEGRAFLIRA 67
Query: 1287 SISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXF 1346
++P Y+M+ LP +C ++++ F+WGS+ KMH +L K + GG+ F
Sbjct: 68 VAQAIPTYIMSCFLLPKGLCSRIEKVVCFFWWGSTEHKKKMHWTKREHLFKSKLEGGMGF 127
Query: 1347 RSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYCLGHSCPPAVQVSDSS--TWKGIIRS 1404
+ R FN+ L K V + +S W+ I +
Sbjct: 128 KILRGFNLAKLTK-----------------------------QVNIGSNSNFAWRSIYNA 158
Query: 1405 FNTLQSHVRWRVGNGQQIS 1423
+Q WR+GNGQ ++
Sbjct: 159 KWVIQKGSCWRIGNGQSVN 177
>IMGA|Medtr8g024620.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 4663551-4665766 E
EGN_Mt090430 20090702
Length = 587
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 59/103 (57%), Gaps = 1/103 (0%)
Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCK-MHLVGWNYLIK 1337
G+EV+IK+ + +P+Y+M+ LP+++ ++++ F+WG K +H + W+ L
Sbjct: 50 GREVMIKSVLQVIPSYIMSVFLLPTTLVDEIEKMVNGFWWGHGGSRRKGIHWLSWDKLTV 109
Query: 1338 PRXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKY 1380
+ +GG+ F+ FN+ +LGK GWK + L ++ +Y
Sbjct: 110 HKNYGGMGFKDLTAFNLVMLGKQGWKFQTQTNCLVSKLFKARY 152
>IMGA|Medtr3g006040.1 NADPH-dependent FMN reductase
chr03_pseudomolecule_IMGAG_V3 606410-609025 E
EGN_Mt090430 20090702
Length = 405
Score = 63.5 bits (153), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 70 SFQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALATGGRFARVC 129
F P + S +W+RL+ P E + LF AS +GTP+ I T G +AR+
Sbjct: 111 DFDPHNQTQSHAQLWVRLLNLPQEHWRKITLFEIASGIGTPLTIDEATQSRLFGHYARIL 170
Query: 130 VELNLAQPLIPRVFV---GGAWR-RVEYEGIISACSSCGRVGHRSESCS 174
V+++++ L V V G A+ VEYE S CS C +GH + C+
Sbjct: 171 VDVDMSDTLFNSVVVEREGYAFPVTVEYERRPSFCSHCKMLGHSIQDCN 219
>IMGA|Medtr1g126570.1 non-LTR retrolelement reverse
transcriptase-like protein, putative
chr01_pseudomolecule_IMGAG_V3 28244106-28242215 H
EGN_Mt090430 20090702
Length = 505
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 71 FQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALATGGRFARVCV 130
F P + +W+RLM P E++ + L+ AS +GTP+ I T G +ARV V
Sbjct: 147 FTPQHQVQTHAQVWVRLMHLPQEYWRKKTLYEIASGIGTPLTIDEATQARLFGLYARVLV 206
Query: 131 ELNLAQPLIPRVFV---GGAWR-RVEYEGIISACSSCGRVGHRSESC 173
+++++ L V V G A+ +EYE C C +GH ++C
Sbjct: 207 DVDMSGRLFESVLVEREGHAFPIAIEYEKQPPYCGHCKMLGHTLQNC 253
>IMGA|Medtr3g122870.1 hypothetical protein
chr03_pseudomolecule_IMGAG_V3 30669678-30667959 E
EGN_Mt090430 20090702
Length = 325
Score = 62.0 bits (149), Expect = 3e-09, Method: Composition-based stats.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 17/127 (13%)
Query: 83 IWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALATGGRFARVCVELNLAQPLIPRV 142
+W+R P+E+++ + LF A A+GTPI I + G +ARV V++NL L +
Sbjct: 136 VWVRFHYLPLEYWHPKFLFEIAGAIGTPILIDENNTIHFFGHYARVLVDINLVGILPDSL 195
Query: 143 FVGGAWR----RVEYEGIISACSSCGRVGHRSESCSDATVDVVEAVKEAPTSLNNIVQES 198
+V +EYE + +C +C +GH + C K+ P+ N I +E
Sbjct: 196 WVEREEYTFEIEIEYEKLPYSCFTCNYIGHSLDHC-----------KKDPS--NKIAREM 242
Query: 199 GLNLNQK 205
G + N +
Sbjct: 243 GASKNDQ 249
>IMGA|Medtr4g097410.1 IMP dehydrogenase/GMP reductase, related,
related chr04_pseudomolecule_IMGAG_V3 20839331-20840518
H EGN_Mt090430 20090702
Length = 284
Score = 62.0 bits (149), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 7/145 (4%)
Query: 71 FQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALATGGRFARVCV 130
F P + WI L E++ + LF A A+G P+ + T+ T G +ARV +
Sbjct: 75 FNPHKVQQTIAQTWIHLHGLSQEYWCKKTLFEIAGALGIPLALDEVTSKRTFGHYARVLI 134
Query: 131 ELNLAQPLIPRVFVGGA----WRRVEYEGIISACSSCGRVGHRSESCSDATVDVVEAVKE 186
E++L + R+ V + VE+E + C+SC VGH ++C V +K
Sbjct: 135 EVDLTLEMRERILVERKDFDFYVDVEFEKLPPFCNSCQIVGHYVKNCKYQIPKVQPIIKP 194
Query: 187 APTSLNN---IVQESGLNLNQKDGF 208
A +++ ++ G LN+ D F
Sbjct: 195 AASTVEKVEAVIIPHGGTLNKVDDF 219
>IMGA|Medtr5g013050.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
3891819-3892634 H EGN_Mt090430 20090702
Length = 213
Score = 59.7 bits (143), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 51/87 (58%)
Query: 1166 PPISHLLFADDLIIFGKASVRXAKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWL 1225
PPIS+LLFADD + F K V A + ++++D + + +T N K I FSK+I+ V
Sbjct: 106 PPISYLLFADDNVHFCKTFVSEAPCLKNIISDIEAASGKTINFDKLGISFSKNISRNVVN 165
Query: 1226 RIQQLLGVAIASDLGKYLGVPLYGRSS 1252
I LLGV + G+YLG+P R S
Sbjct: 166 SISSLLGVNESIGGGEYLGLPSMVRHS 192
>IMGA|Medtr4g070130.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13557404-13554904 H EGN_Mt090430 20090702
Length = 447
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 42/178 (23%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQ 1127
D+ K YD+++W +L+ +++ GF W+ IM + V+ N G RQ
Sbjct: 108 DISKAYDRIDWLYLKQIMVKMGFVTHWIRWIMMCVEIVDYFVIVNNESVGPIFPGRGFRQ 167
Query: 1128 GDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRX 1187
GDPLS YLF+L + R
Sbjct: 168 GDPLSLYLFILCAK------------------------------------------DERE 185
Query: 1188 AKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGV 1245
A V+ +L + + + Q +L KS++Y+S+S+ V I +LG KYLG+
Sbjct: 186 ANVMKHILETYEAASGQAISLPKSKVYYSRSVPGHVQDFITSILGDCTLIGTIKYLGL 243
>IMGA|Medtr4g069720.1 RNA-directed DNA polymerase (Reverse
transcriptase) chr04_pseudomolecule_IMGAG_V3
13373662-13371162 H EGN_Mt090430 20090702
Length = 447
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 42/178 (23%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQ 1127
D+ K YD+++W +L+ +++ GF W+ IM + V+ N G RQ
Sbjct: 108 DISKAYDRIDWLYLKQIMVKMGFVTHWIRWIMMCVEIVDYFVIVNNESVGPIFPGRGFRQ 167
Query: 1128 GDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRX 1187
GDPLS YLF+L + R
Sbjct: 168 GDPLSLYLFILCAK------------------------------------------DERE 185
Query: 1188 AKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASDLGKYLGV 1245
A V+ +L + + + Q +L KS++Y+S+S+ V I +LG KYLG+
Sbjct: 186 ANVMKHILETYEAASGQAISLPKSKVYYSRSVPGHVQDFITSILGDCTLIGTIKYLGL 243
>IMGA|AC233668_8.1 RNA-directed DNA polymerase (reverse
transcriptase), related AC233668.2 19990-20214 H
EGN_Mt090430 20090702
Length = 74
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/61 (50%), Positives = 37/61 (60%)
Query: 1124 GLRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKA 1183
GLRQGDPLSPYLF+L EGLS LI + + P I HLLFADD +F +A
Sbjct: 10 GLRQGDPLSPYLFILCAEGLSTLIDKDERCGDLRGISICTHAPTICHLLFADDCFLFFRA 69
Query: 1184 S 1184
+
Sbjct: 70 N 70
>IMGA|Medtr5g029030.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
12035165-12036141 H EGN_Mt090430 20090702
Length = 250
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 17/99 (17%)
Query: 1341 FGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKYC---------LGHSCPPAVQ 1391
+GG+ FR FN+ +LGK GWKLL N + ++ KY LGH
Sbjct: 5 YGGMGFRHFFGFNLAMLGKQGWKLLTNQDTIVARIYKAKYYPNTYFLGARLGH------- 57
Query: 1392 VSDSSTWKGIIRSFNTLQSHVRWRVGNGQQISXWYDSWL 1430
+ S W+ I ++ RWR+GNG+ I+ W D WL
Sbjct: 58 -NQSYIWRSIFALQVLVRGGQRWRIGNGKNIAVWTDPWL 95
>IMGA|Medtr3g008760.1 non-LTR retrolelement reverse
transcriptase-like protein, related, putative
chr03_pseudomolecule_IMGAG_V3 1113247-1111535 E
EGN_Mt090430 20090702
Length = 248
Score = 58.9 bits (141), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 83 IWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALATGGRFARVCVELNLAQPLIPRV 142
+WIRL+E P E++ D L ASA+GTP+ I T F RV V+++L++ + V
Sbjct: 56 VWIRLLELPQEYWMDCTLKEIASAIGTPLLIDAATQNPI---FGRVLVDMDLSKNIFNEV 112
Query: 143 FVGGAWR----RVEYEGIISACSSCGRVGHRSESC 173
+ + YE + + C+ CG +GH SC
Sbjct: 113 MIERTSFSFSIEITYECLPAFCTHCGNIGHHISSC 147
>IMGA|AC233655_32.1 RNA-directed DNA polymerase (Reverse
transcriptase); Endonuclease/exonuclease/phosphatase
AC233655.2 202219-200303 H EGN_Mt090430 20090702
Length = 567
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 1069 LEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQTWGLRQG 1128
L++ DK +++L +L GF +W++ + ++ +L N GLRQG
Sbjct: 461 LQRALDK--FEYLFSILEKMGFNSVWINWMHMCVTNVKYHILVNDEIVGPVIPGRGLRQG 518
Query: 1129 DPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADD 1176
DPLSPYLF+L G++ LI Q + P ISHLLFADD
Sbjct: 519 DPLSPYLFILCAGGMTSLIKQAERNNILHGIKVCCIAPAISHLLFADD 566
>IMGA|Medtr2g104960.1 non-LTR retrolelement reverse
transcriptase-like protein, putative
chr02_pseudomolecule_IMGAG_V3 24904029-24902266 H
EGN_Mt090430 20090702
Length = 587
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 70 SFQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALATGGRFARVC 129
F P + + +W+RL+ P E++ + LF AS GTP+ I T G FA +
Sbjct: 148 DFTPKAQAQTHAQVWVRLLHLPQEYWSRQTLFEIASGFGTPLTIDEATQNKRFGLFAIIL 207
Query: 130 VELNLAQPLIPRVFV---GGAWR-RVEYEGIISACSSCGRVGHRSESCSDATVDV-VEAV 184
V++++A + + V G A V+YE C+ C +GH +CS D V+A
Sbjct: 208 VDVDMAVKMFESIIVEREGYALTVMVQYEKYPLFCAHCRSLGHNIHACSKMNADTSVKAT 267
Query: 185 KEAPTSLNNI 194
K+ +NN+
Sbjct: 268 KK----VNNV 273
>IMGA|Medtr5g088270.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
34195188-34196556 H EGN_Mt090430 20090702
Length = 307
Score = 57.4 bits (137), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 18/148 (12%)
Query: 1296 MNTKWLPSSICGTLDRLARNFYWGSSVEHCK-MHLVGWNYLIKPRXFGGLXFRSARLFNI 1354
M+ LP+++ ++++ F+WG+ + + +H + N L + GG+ F+ FN+
Sbjct: 1 MSVFLLPTTLVDQIEKMINGFWWGNGGSNRRGIHWLSCNKLRVHKNHGGMGFKDLTAFNL 60
Query: 1355 TLLGKLGWKLLVNDSDLXVQVLSLKYC---------LGHSCPPAVQVSDSSTWKGIIRSF 1405
+LGK GWK L ++ +Y LGH+ S W+ I +
Sbjct: 61 AMLGKQGWKFQFQSECLVSKLFKARYFPQSDYLGAKLGHNL--------SFVWRSIYSAR 112
Query: 1406 NTLQSHVRWRVGNGQQISXWYDSWLSMG 1433
+S VRW++GN I + WL+ G
Sbjct: 113 RVARSGVRWKIGNSVNIPIFDAPWLADG 140
>IMGA|Medtr3g009350.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
1330505-1330813 H EGN_Mt090430 20090702
Length = 102
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 1236 ASDLGKYLGVPL-YGRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIKTSISSLPAY 1294
A KYLG+P GR+ ++ + ++ G+ VLIK ++P Y
Sbjct: 4 ADHFTKYLGMPTGMGRNKRQVFEFLQDRIWKKLKGWKERNLSFAGRSVLIKVVAEAIPTY 63
Query: 1295 VMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWN 1333
+M+ LP S C L++L N +WGS+ + K H + WN
Sbjct: 64 IMSGFLLPKSFCNQLEKLICNIWWGSNTDQGKTHWINWN 102
>IMGA|AC235669_13.1 RNA-directed DNA polymerase (Reverse
transcriptase) AC235669.1 69436-68759 H EGN_Mt090430
20090702
Length = 225
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 26/55 (47%), Positives = 34/55 (61%)
Query: 1068 DLEKVYDKVNWDFLRFVLISFGFPGLWVSLIMSALSXFSLAVLWNGSPSSFFSQT 1122
D EK YD+ NWDFL L FGFP +SL MS + +L+VLWNG + F+ +
Sbjct: 163 DHEKAYDRHNWDFLELTLHGFGFPSTTISLNMSCVRSSNLSVLWNGVKTDHFTPS 217
>IMGA|Medtr3g019330.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr03_pseudomolecule_IMGAG_V3
3889810-3888042 H EGN_Mt090430 20090702
Length = 489
Score = 57.0 bits (136), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 1283 LIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWG-SSVEHCKMHLVGWNYLIKPRXF 1341
+IK+ + ++ +YVM+ LP+++ T++R+ +F+WG H ++ + W L +
Sbjct: 1 MIKSVLQAIMSYVMSLFQLPTTLITTIERMMNSFWWGHDRSTHQSINWLSWEKLSMHKSH 60
Query: 1342 GGLXFRSARLFNITLLGKLGWKLLVNDSDL 1371
GG+ F+ FN+ +LGK GWK L + + L
Sbjct: 61 GGMGFKDLSAFNLAMLGKQGWKFLSDTNSL 90
>IMGA|Medtr7g076260.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 15457723-15462032 E
EGN_Mt090430 20090702
Length = 117
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 1134 YLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKASVRXAKVVHD 1193
+LFVL M+ LSL+IH QV W V GGP SHLLF +D ++F +A K+V +
Sbjct: 7 WLFVLCMKKLSLMIHDQVTSNVWSEVKICNGGPIFSHLLFGNDHLVFTEAKCFQVKLVRN 66
Query: 1194 VLAD 1197
++ +
Sbjct: 67 LMVE 70
>IMGA|Medtr7g146050.1 Zinc finger, CCHC-type, putative
chr07_pseudomolecule_IMGAG_V3 34851029-34855592 E
EGN_Mt090430 20090702
Length = 411
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 62 LYIQKXKPSFQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALAT 121
L I + F S + + IW+ P+E+++D +LF A+GTPI I T +
Sbjct: 132 LRISRLSLDFNLSNQTQTHSQIWVCFHYLPLEYWHDRILFEIDEAIGTPIIIYENTRNNS 191
Query: 122 GGRFARVCVELNLAQPLIPRVFVGGAWRRVEYEGIISACSSCGRVGHRSESC 173
G +A V V N A IP +EYE C +C +GH S C
Sbjct: 192 FGHYAYVLVYFNFAG-FIPDTLC----IEIEYEHPPYFCFTCNSIGHSSNHC 238
>IMGA|Medtr7g127540.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
29929733-29929948 H EGN_Mt090430 20090702
Length = 71
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 1293 AYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLF 1352
+Y M +W P SIC D++A F W S E +HLV W+ + + + GG+ R AR
Sbjct: 4 SYGMQIQWYPQSICDYFDKVACRFVWKGS-EDKGIHLVSWDKMSRHKKLGGIGIRIARFQ 62
Query: 1353 NITLLGKL 1360
N+ LLGKL
Sbjct: 63 NVALLGKL 70
>IMGA|Medtr7g077130.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr07_pseudomolecule_IMGAG_V3
16025455-16024014 E EGN_Mt090430 20090702
Length = 70
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/59 (49%), Positives = 36/59 (61%)
Query: 1125 LRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSWIPVFASKGGPPISHLLFADDLIIFGKA 1183
LRQ DPLSP+LF++ EGLS LI + V + G P + HLLFADD +F KA
Sbjct: 9 LRQADPLSPHLFIICAEGLSSLIREAEVGEIISGTSTCSGAPLVFHLLFADDCFLFFKA 67
>IMGA|Medtr1g117580.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 25273871-25275952 H
EGN_Mt090430 20090702
Length = 663
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 1342 GGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLSLKY-CLGHSCPPAVQVSDSSTWKG 1400
G + F+S FN+ +LGK GW++L N L ++ +Y + + S W+
Sbjct: 477 GSMSFKSLGTFNLAMLGKQGWRILTNPDTLIAKIYKARYFSRCNFLEATIGHKPSFVWRS 536
Query: 1401 IIRSFNTLQSHVRWRVGNGQQISXWYDSWL----SMGPLVDLLETLHEVR 1446
I S L++ RW++GNG I W + W+ ++ PL D+ TL +R
Sbjct: 537 ICNSKFILKAGSRWKIGNGTSIPVWNNYWMKDNVTLYPLEDVASTLANLR 586
>IMGA|Medtr5g095750.1 non-LTR retrolelement reverse
transcriptase-like protein, putative
chr05_pseudomolecule_IMGAG_V3 37959806-37958039 E
EGN_Mt090430 20090702
Length = 449
Score = 53.9 bits (128), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 71 FQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTA---LATGGRFAR 127
F P+ S +W+R P E++ LF ASA+GTP+ + T T G +AR
Sbjct: 98 FNPNNHKQSYAQVWVRFRYLPQEYWMPRTLFEIASALGTPLDMDENTGNREKRTFGHYAR 157
Query: 128 VCVELNLAQPLIPRVFVGGAW----RRVEYEGIISACSSCGRVGHR 169
+ V+++L++ L + V V YE + C+ C ++GH+
Sbjct: 158 LLVDVDLSKKLYYSITVQREGFEFPLEVIYEKLPQYCNMCKQIGHK 203
>IMGA|Medtr3g043440.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 11780720-11779218 H
EGN_Mt090430 20090702
Length = 425
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKP 1338
G+ L+K+ I S+ + ++ P + ++R RNF W V K+ V W+ + P
Sbjct: 3 GRVQLVKSLIQSMLLHCISVYSFPVKLTKDIERWMRNFVWSGDVNQRKLVTVSWHKVCLP 62
Query: 1339 RXFGGLXFRSARLFNITLLGKLGWKLLVNDSD----LXVQVLSLKYCLGHSCPPAVQVSD 1394
GGL RS N KL +LL ++ L +VL K + +
Sbjct: 63 LKEGGLGIRSLSKINEGANLKLCRELLHSNYQWAHFLRSRVLKKKKPISYHI-------F 115
Query: 1395 SSTWKGIIRSFNTLQSHVRWRVGNGQQISXWYDSWLSMGPLVD 1437
SS W GI + + ++ W +G+G I+ W DSW PLV+
Sbjct: 116 SSVWSGIKHKYTEVLANSSWNLGDGANINFWTDSWCG-KPLVE 157
>IMGA|Medtr5g023930.1 Zinc finger, CCHC-type
chr05_pseudomolecule_IMGAG_V3 9477733-9471443 E
EGN_Mt090430 20090702
Length = 652
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
Query: 61 PLYIQKXKPSFQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALA 120
PL +QK P+T+ + ++ +W++ P F + + + S VG +K +
Sbjct: 265 PLVLQKVSFGDDPTTSPLDTIEMWVQAHNLPFGFMTESMGILLGSQVGGLVKYDAENNFG 324
Query: 121 TGGRFARVCVELNLAQPLI-----PRVFVGGAWRRVEYEGIISACSSCGRVGHRSESCSD 175
+ RF R+ V L + +PL+ R YE + + C CGR+GH C D
Sbjct: 325 SWRRFMRLRVALKVGEPLVASWQFEREGADAVTVFFRYEKLGNLCYVCGRMGHNDNYCPD 384
Query: 176 ATVD 179
D
Sbjct: 385 RYED 388
>IMGA|Medtr4g128710.1 non-LTR retrolelement reverse
transcriptase-like protein, putative
chr04_pseudomolecule_IMGAG_V3 30379528-30381961 H
EGN_Mt090430 20090702
Length = 552
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 83 IWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALATGGRFARVCVELNLAQPLIPRV 142
IW+RL+ P E++ L AS++GTP+ I T G FARV ++++L + L V
Sbjct: 32 IWVRLLRLPREYWCKTTLLEIASSLGTPLIIDDATMPRCFGLFARVLIDVDLYEQLFETV 91
Query: 143 FVGGAWR----RVEYEGIISACSSCGRVGHRSESC 173
V V+YE S C+ C +GH SC
Sbjct: 92 IVEQEGHTLSVSVQYEQQPSFCTHCKMLGHDILSC 126
>IMGA|Medtr1g105720.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 21866119-21866313 H
EGN_Mt090430 20090702
Length = 64
Score = 53.1 bits (126), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 1099 MSALSXFSLAVLWNGSPSSFFSQTWGLRQGDPLSPYLFVLYMEGLSLLIHQQVVKKSW 1156
M + + F V WNG+ + +F G+ +GDP+SPYLF+L M+ LS ++ +V +++W
Sbjct: 1 MHSFTSFESNVKWNGARADYFRTRRGIHRGDPISPYLFILCMDKLSRMMLHEVNQRNW 58
>IMGA|Medtr3g079550.1 non-LTR retrolelement reverse
transcriptase-like protein, related, putative
chr03_pseudomolecule_IMGAG_V3 18466111-18466507 H
EGN_Mt090430 20090702
Length = 116
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 13/120 (10%)
Query: 56 MVGGQP--LYIQKXKPSFQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKI 113
MV +P L + + F + ++ +WIRL++ P E++ + L A A+GTPI I
Sbjct: 3 MVNLKPGLLSLSQWSKDFIKYSQRLTHAHVWIRLLDLPQEYWLERTLLEIAGAIGTPIII 62
Query: 114 GRQTALATGGRFARVCVELNLAQPLIPRVFVGGAWRRVEYEGIISACSSCGRVGHRSESC 173
T + T G +A E + P+ VEYE + CS C +GH +C
Sbjct: 63 DVVTQIRTFGNYADHGGEGRVRFPI-----------EVEYEWLPEFCSYCQILGHSVTNC 111
>IMGA|Medtr4g018900.1 non-LTR retrolelement reverse
transcriptase-like protein, putative
chr04_pseudomolecule_IMGAG_V3 3736937-3735027 H
EGN_Mt090430 20090702
Length = 604
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 70 SFQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALATGGRFARVC 129
F P + + IW+R + P E++ + LF AS +GTP+ I T G FARV
Sbjct: 194 DFAPQAQTQTHAQIWVRFLNLPQEYWEKQTLFEIASGLGTPLSIDDTTLNRHLGIFARVL 253
Query: 130 VELNLAQPLIPRVFVGGAWRR----VEYE 154
++++L + L V V R V+YE
Sbjct: 254 IDIDLCENLFESVVVESEERALSIIVQYE 282
>IMGA|Medtr3g030370.1 hypothetical protein
chr03_pseudomolecule_IMGAG_V3 8211867-8210811 H
EGN_Mt090430 20090702
Length = 310
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 77 SISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIGRQTALATGGRFARVCVELNLAQ 136
S ++++WIRL++ P E++ + LF A+ VGTP+ + T T G +AR+ V+++L++
Sbjct: 23 SAFTILVWIRLLKLPQEYWRPKTLFEIANGVGTPLDLDVATKNHTFGHYARILVDMDLSK 82
Query: 137 PLIPRVFV 144
+ V
Sbjct: 83 RFFDDILV 90
>IMGA|Medtr1g064980.1 RNA-directed DNA polymerase ; Ribonuclease H,
related chr01_pseudomolecule_IMGAG_V3 12753081-12752276 H
EGN_Mt090430 20090702
Length = 137
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 1227 IQQLLGVAIASDLGKYLGVPLY-GRSSVSQYQSIIQKVEXXXXXXXXXXXXXXGKEVLIK 1285
IQ + +DLG Y G PL GR S Y ++ KV G+ L+K
Sbjct: 27 IQDISTNKFVADLGHYPGFPLVKGRVSRYVYNDVVDKVSKWLAAWKGTILNKVGQAYLVK 86
Query: 1286 TSISSLPAYVMNTKWLPSSICGTLDRLARNFYW 1318
+ +++ Y + LP+ +C LD++AR+F W
Sbjct: 87 SVTTTISVYTIQLHNLPTHVCKKLDKMARSFLW 119
>IMGA|Medtr4g022090.1 Putative non-LTR retroelement reverse
transcriptase, chr04_pseudomolecule_IMGAG_V3
4393709-4394617 H EGN_Mt090430 20090702
Length = 188
Score = 51.6 bits (122), Expect = 4e-06, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 1179 IFGKASVRXAKVVHDVLADFCSGNSQTTNLAKSRIYFSKSIAHVVWLRIQQLLGVAIASD 1238
+FG+A+ R + V +L FCS + Q ++ K+ I FSK++ + + + G +
Sbjct: 22 LFGQATTRQMRCVMRILNLFCSLSRQQVSIEKTSILFSKNVDRAMHNSLLHISGFRETVE 81
Query: 1239 LGKYLGVPLYGRS 1251
LGKYLG+PL GR+
Sbjct: 82 LGKYLGLPLTGRA 94
>IMGA|Medtr4g011530.1 HMG-I and HMG-Y, DNA-binding
chr04_pseudomolecule_IMGAG_V3 1699586-1698438 H
EGN_Mt090430 20090702
Length = 382
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 71/150 (47%), Gaps = 10/150 (6%)
Query: 55 YMVGGQPLYIQKXKPSFQPSTASISSMVIWIRLMEFPMEFYYDEVLFVAASAVGTPIKIG 114
Y + +P+ ++ P F + + +WI+L P+ + + L S +G P+
Sbjct: 190 YTIANRPVIVKSWAPDFDFQKEILKVVPLWIQLPNLPLTCWGLDFLSRIGSTLGNPLFAD 249
Query: 115 RQTALATGGRFARVCVELNLAQPLIPRVFV----GGAW-RRVEYEGIISACSSCGRVGHR 169
T+ + +AR+ VE+++ +PL+ +V V G + +R+ Y+ S C C +VGH
Sbjct: 250 ECTSKQSRISYARLLVEIDVTRPLLYKVMVESPDGKCFEQRIVYDWEPSFCKKCQQVGH- 308
Query: 170 SESCSDATVDVVEAVKE--APTSLNNIVQE 197
C + VE K+ P + N+V +
Sbjct: 309 --VCDKQSFQPVERPKKDWIPKTQVNLVDK 336
>IMGA|Medtr7g005440.1 Histone H4; Histone-fold
chr07_pseudomolecule_IMGAG_V3 458708-460573 E
EGN_Mt090430 20090702
Length = 338
Score = 51.2 bits (121), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 106 AVGTPIKIGRQTALATGGRFARVCVELNLAQPLIPRVFVG----GAWRRVEYEGIISACS 161
+ G P++I T + T G +AR+ ++L+L+QP++ + VG + ++EYE C+
Sbjct: 118 SFGVPLEIDESTKIRTFGHYARILIDLDLSQPILNNLLVGREESAFFVKIEYEKQPLFCN 177
Query: 162 SCGRVGHRSESCSDATVDVVEAVKE 186
+C + H ++C + ++ KE
Sbjct: 178 NCKHIRHSIQNCKKIAQNSIDLFKE 202
>IMGA|Medtr5g084580.1 RNA-directed DNA polymerase (reverse
transcriptase), related chr05_pseudomolecule_IMGAG_V3
32212318-32210868 H EGN_Mt090430 20090702
Length = 201
Score = 50.8 bits (120), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 1279 GKEVLIKTSISSLPAYVMNTKWLPSSICGTLDRLARNFYWGSSVEHCKMHLVGWNYLIKP 1338
G+ L K+ I ++P Y M + +P + ++ + F WG + +H V W+ + KP
Sbjct: 42 GRVNLAKSVIEAVPTYPMMSCAIPKACLQDSQKVQKAFIWGDNDFQKHVHAVNWSTMTKP 101
Query: 1339 RXFGGLXFRSARLFNITLLGKLGWKL 1364
+ GGL R N L KLGWKL
Sbjct: 102 KRCGGLGIRRLEEMNEACLLKLGWKL 127
>IMGA|Medtr4g136100.1 reverse transcriptase, related
chr04_pseudomolecule_IMGAG_V3 33170515-33169924 E
EGN_Mt090430 20090702
Length = 159
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 1318 WGSSVEHCKMHLVGWNYLIKPRXFGGLXFRSARLFNITLLGKLGWKLLVNDSDLXVQVLS 1377
W K+ V W + K R GGL + L N L L WK+L V++
Sbjct: 7 WSGDSGQKKICTVAWRDVCKSREEGGLAVKDPSLVNKAFLLHLCWKMLTLQDQW--AVMA 64
Query: 1378 LKYCLGHSCPPAVQVSDSSTWKGIIRSFNTLQSHVRWRVGNGQQISXWYDSWLSMGPLVD 1437
+ + P + + SS W G+ N + H W VGNG+ I W D WL+M +VD
Sbjct: 65 RMRFMKNGKPRSSHLK-SSIWLGLRPLLNDIFQHATWTVGNGESIYFWTDRWLAM-LIVD 122
Query: 1438 LLET---LHEVRSI 1448
+ + LH+V ++
Sbjct: 123 IWQIPVHLHKVLTV 136