Jatropha Genome Database
- JcCA0066751.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0066751.20 + phase: 0
(303 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr7g143380.1 DNA-directed RNA polymerase subunit beta'',... 410 e-115
IMGA|Medtr5g106210.1 DNA-directed RNA polymerase subunit beta'',... 239 1e-63
IMGA|Medtr7g075680.1 DNA-directed RNA polymerase subunit beta'',... 145 2e-35
IMGA|Medtr3g043380.1 DNA-directed RNA polymerase subunit beta'',... 62 3e-10
IMGA|Medtr8g137540.1 hypothetical protein chr08_pseudomolecule_I... 52 5e-07
IMGA|Medtr8g137120.1 hypothetical protein chr08_pseudomolecule_I... 52 5e-07
IMGA|Medtr5g023000.1 Protein kinase; RNA polymerase Rpb1, domain... 50 2e-06
>IMGA|Medtr7g143380.1 DNA-directed RNA polymerase subunit beta'',
putative chr07_pseudomolecule_IMGAG_V3 34402054-34400451
E EGN_Mt090430 20090702
Length = 264
Score = 410 bits (1054), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/243 (82%), Positives = 218/243 (89%), Gaps = 2/243 (0%)
Query: 28 PYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSRSGDITQGLPKVEQVLEVRSIDSISISL 87
P+L AT+H HYGEI Y+GD LVTF+YEKSRSGDITQGLPKVEQ+LE+RSIDSIS++L
Sbjct: 5 PHLKLKSATIHDHYGEILYQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNL 64
Query: 88 EKRVEGWNECITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIV 147
EK ++ WNECITRILGIPWGFLIGAELTI QSRISLVNKIQKVYRSQGV IHNRHIEIIV
Sbjct: 65 EKGIDAWNECITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIV 124
Query: 148 RQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFI 207
RQ+TSKVLVSEDGM NVF PGELIGLLRAERTGRALEEAICYRA+LLGIT+ SLNTQSFI
Sbjct: 125 RQMTSKVLVSEDGMFNVFLPGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFI 184
Query: 208 SEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPGGTGFKGLVQ--GSRQHNNIPL 265
SEASFQETARVLAKAALRGRIDWLK LKEN +LGGMIP GTGFK ++ SRQ+N I L
Sbjct: 185 SEASFQETARVLAKAALRGRIDWLKVLKENAILGGMIPVGTGFKRIMHRSRSRQYNKITL 244
Query: 266 KTK 268
K K
Sbjct: 245 KIK 247
>IMGA|Medtr5g106210.1 DNA-directed RNA polymerase subunit beta'',
putative chr05_pseudomolecule_IMGAG_V3 42712924-42713720
E EGN_Mt090430 20090702
Length = 198
Score = 239 bits (609), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/177 (68%), Positives = 129/177 (72%), Gaps = 28/177 (15%)
Query: 3 KNGPHLK--SGQVIIVRMDSVVIRSAKPYLAAPGATVHGHYGEIFYEGDTLVTFLYEKSR 60
KNGPHLK SGQVI ++MDSV+IRSA PYLA P AT+H HYGEI Y+GD LVTF+YEKSR
Sbjct: 48 KNGPHLKLKSGQVITIQMDSVIIRSANPYLATPEATIHSHYGEILYQGDILVTFIYEKSR 107
Query: 61 SGDITQGLPKVEQVLEVRSIDSISISLEKRVEGWNECITRILGIPWGFLIGAELTIVQSR 120
SGDITQ WNECITRILGIPWGFLIG ELTI Q
Sbjct: 108 SGDITQA--------------------------WNECITRILGIPWGFLIGVELTIAQIH 141
Query: 121 ISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAE 177
I LVNKIQK YRSQGV IHNRH +IIVRQITSKVL EDGMSNVF PGELIGLLR E
Sbjct: 142 ICLVNKIQKAYRSQGVHIHNRHNKIIVRQITSKVLALEDGMSNVFLPGELIGLLRTE 198
>IMGA|Medtr7g075680.1 DNA-directed RNA polymerase subunit beta'',
putative chr07_pseudomolecule_IMGAG_V3 15231996-15231586
E EGN_Mt090430 20090702
Length = 117
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/82 (87%), Positives = 74/82 (90%)
Query: 161 MSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLA 220
MSNVF PGELIGLLRAERTGRALEEAICYRA+LLGIT+ SLNTQSFISEASFQETARVLA
Sbjct: 1 MSNVFLPGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLA 60
Query: 221 KAALRGRIDWLKGLKENVVLGG 242
KAALRGRIDWLKGLK G
Sbjct: 61 KAALRGRIDWLKGLKRECCFRG 82
>IMGA|Medtr3g043380.1 DNA-directed RNA polymerase subunit beta'',
putative chr03_pseudomolecule_IMGAG_V3
11747158-11746615 H EGN_Mt090430 20090702
Length = 55
Score = 62.4 bits (150), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 2/40 (5%)
Query: 3 KNGPHLK--SGQVIIVRMDSVVIRSAKPYLAAPGATVHGH 40
KNGPHLK SGQVI V+MDSV+IRSA PYLA P AT+HG
Sbjct: 14 KNGPHLKLKSGQVINVQMDSVIIRSANPYLATPEATIHGQ 53
>IMGA|Medtr8g137540.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 32975414-32974419 E
EGN_Mt090430 20090702
Length = 63
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 31/38 (81%)
Query: 136 VQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 173
V I NRHI+II+RQITSKV VS++ SNVF G+LIGL
Sbjct: 26 VHIRNRHIKIIMRQITSKVFVSKNETSNVFLLGQLIGL 63
>IMGA|Medtr8g137120.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 32825165-32826160 E
EGN_Mt090430 20090702
Length = 63
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 31/38 (81%)
Query: 136 VQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGL 173
V I NRHI+II+RQITSKV VS++ SNVF G+LIGL
Sbjct: 26 VHIRNRHIKIIMRQITSKVFVSKNETSNVFLLGQLIGL 63
>IMGA|Medtr5g023000.1 Protein kinase; RNA polymerase Rpb1, domain 6
chr05_pseudomolecule_IMGAG_V3 8992181-9001239 E
EGN_Mt090430 20090702
Length = 1862
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 183 LEEAICYRAILLGITRASLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVL 240
L + + YR L+ ITR +N + SF+ET +L AA+ D L+G+ EN++L
Sbjct: 1407 LCDTMTYRGHLMAITRHGINRNETGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIML 1466
Query: 241 GGMIPGGTGFKGLV 254
G + P GTG L+
Sbjct: 1467 GQLAPIGTGECALL 1480