Jatropha Genome Database

JcCA0066751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066751.10 + phase: 0 /pseudo/partial
         (189 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g135260.1 Zinc finger, C2H2-type chr01_pseudomolecule...   137   3e-33
IMGA|Medtr1g023440.1 Zinc finger, C2H2-type chr01_pseudomolecule...   132   1e-31
IMGA|Medtr7g118480.1 Zinc finger, C2H2-type chr07_pseudomolecule...    77   5e-15
IMGA|Medtr7g024970.1 Zinc finger, C2H2-type chr07_pseudomolecule...    76   1e-14
IMGA|Medtr7g118490.1 Zinc finger, C2H2-type chr07_pseudomolecule...    68   3e-12
IMGA|Medtr4g076150.1 Zinc finger, C2H2-type chr04_pseudomolecule...    67   6e-12
IMGA|Medtr5g106680.1 Zinc finger, C2H2-type chr05_pseudomolecule...    66   9e-12
IMGA|Medtr2g114530.1 Zinc finger, C2H2-type chr02_pseudomolecule...    66   1e-11
IMGA|Medtr4g036160.1 Zinc finger, C2H2-type chr04_pseudomolecule...    57   6e-09
IMGA|Medtr8g105670.1 Zinc finger, C2H2-type chr08_pseudomolecule...    50   9e-07
IMGA|Medtr2g122790.1 Zinc finger, C2H2-type chr02_pseudomolecule...    49   2e-06

>IMGA|Medtr1g135260.1 Zinc finger, C2H2-type
           chr01_pseudomolecule_IMGAG_V3 30191745-30192834 E
           EGN_Mt090430 20090702
          Length = 251

 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/177 (46%), Positives = 104/177 (58%), Gaps = 27/177 (15%)

Query: 14  AKRKRTKRSRTE--NSPTEEEYLALCLLMLAKGTTAATNYDHSSPSPSLELCYKCKLCNK 71
            K+KR+KR R    N PTEEEYLALCL+ML++    + N   SSP   L+L +KC +CNK
Sbjct: 38  VKKKRSKRPRIGIGNPPTEEEYLALCLIMLSQ----SNNQIQSSP---LKLNHKCSVCNK 90

Query: 72  SFPNHQALAGHKASHRKPVGVVDDDQSETASAFTTSKTISKVISVNVKT---HECSICHR 128
           +FP++QAL GHKASHRK            +S+   S T+++ ISV+V T   HECSICH+
Sbjct: 91  AFPSYQALGGHKASHRK------------SSSENQSTTVNETISVSVSTSKMHECSICHK 138

Query: 129 TFPSGQALGGHKRRHYXXXXXXXXXXXXXR---FDSEKKGMDLSLISQHDFDLNLPA 182
           +FP+GQALGGHKR HY                       G   S IS   FDLNLPA
Sbjct: 139 SFPTGQALGGHKRCHYEGVINNNHNHNNSNSSGITVSDAGAASSSISHRGFDLNLPA 195


>IMGA|Medtr1g023440.1 Zinc finger, C2H2-type
           chr01_pseudomolecule_IMGAG_V3 5223325-5222425 E
           EGN_Mt090430 20090702
          Length = 232

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 101/167 (60%), Gaps = 16/167 (9%)

Query: 29  TEEEYLALCLLMLAKGTTAATNYDHSSPSPSL--------ELCYKCKLCNKSFPNHQALA 80
           TEEEYLALCL+MLA+G T   +++  +P P+         +L YKC +CNK F ++QAL 
Sbjct: 38  TEEEYLALCLIMLARGHTNRHDFNPLNPPPTTIDNNNNNTKLSYKCSVCNKEFSSYQALG 97

Query: 81  GHKASHRK-PVGVVDDDQSETASAFTTSKTISKVISVNVKTHECSICHRTFPSGQALGGH 139
           GHKASHRK  VG   DD   T+SA TTS   +      V++HECSICHR+FP+GQALGGH
Sbjct: 98  GHKASHRKNSVGGGGDDHPSTSSAATTSSANTN--GGGVRSHECSICHRSFPTGQALGGH 155

Query: 140 KRRHYXXXXXXXXXXXXXRFDSEKKGMDLSLISQHDFDLNLPALPEL 186
           KR HY                +  +GM  +   Q DFDLN+PA PE 
Sbjct: 156 KRCHYEGVVGGGASAV-----TVSEGMGSTHSHQRDFDLNIPAFPEF 197


>IMGA|Medtr7g118480.1 Zinc finger, C2H2-type
           chr07_pseudomolecule_IMGAG_V3 27993959-27993331 F
           EGN_Mt090430 20090702
          Length = 172

 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 14/112 (12%)

Query: 34  LALCLLMLAKGTTAATNY--DHSSPSPSLELCYKCKLCNKSFPNHQALAGHKASHRKPVG 91
           LA CL+ML+       N   +  S +P   + Y+CK CNK FP+ QAL GH+ASH++   
Sbjct: 15  LANCLMMLSYPQHQPQNNKPNQKSFAP---VEYECKTCNKKFPSFQALGGHRASHKR--- 68

Query: 92  VVDDDQSETASAFTTSKTISKVISVNVKTHECSICHRTFPSGQALGGHKRRH 143
                + E     T S ++S  +    K HECSIC + F  GQALGGH RRH
Sbjct: 69  ----SKLEGDELLTNSTSLS--LGNKPKMHECSICGQNFSLGQALGGHMRRH 114


>IMGA|Medtr7g024970.1 Zinc finger, C2H2-type
           chr07_pseudomolecule_IMGAG_V3 5972867-5972029 F
           EGN_Mt090430 20090702
          Length = 184

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 19/125 (15%)

Query: 20  KRSRTENSPTEEEYLALCLLMLAKGTTA-ATNYDHSSPSPSLELCYKCKLCNKSFPNHQA 78
           KR+R  +S T    +A CL++L++G+      Y   S + S    ++CK CN+ FP+ QA
Sbjct: 2   KRAREVDSIT----MANCLMLLSRGSDQFEATY---SSTTSNNRVFECKTCNRQFPSFQA 54

Query: 79  LAGHKASHRKPVGVVDDDQSETASAFTTSKTISKVISVNVKTHECSICHRTFPSGQALGG 138
           L GH+ASH+KP  + ++   +     T  K          KTHECSIC   F  GQALGG
Sbjct: 55  LGGHRASHKKPRLMGENIDGQLLH--TPPKP---------KTHECSICGLEFAIGQALGG 103

Query: 139 HKRRH 143
           H RRH
Sbjct: 104 HMRRH 108


>IMGA|Medtr7g118490.1 Zinc finger, C2H2-type
           chr07_pseudomolecule_IMGAG_V3 27999583-27998806 F
           EGN_Mt090430 20090702
          Length = 165

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 8/80 (10%)

Query: 64  YKCKLCNKSFPNHQALAGHKASHRKPVGVVDDDQSETASAFTTSKTISKVISVNVKTHEC 123
           Y+CK CNK F + QAL GH+ASH++      ++  E A + +        +    K HEC
Sbjct: 34  YECKTCNKKFSSFQALGGHRASHKRMKLAEGEELKEQAKSLS--------LWNKPKMHEC 85

Query: 124 SICHRTFPSGQALGGHKRRH 143
           SIC   F  GQALGGH R+H
Sbjct: 86  SICGMGFSLGQALGGHMRKH 105


>IMGA|Medtr4g076150.1 Zinc finger, C2H2-type
           chr04_pseudomolecule_IMGAG_V3 15050617-15049424 E
           EGN_Mt090430 20090702
          Length = 284

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 54/118 (45%), Gaps = 38/118 (32%)

Query: 64  YKCKLCNKSFPNHQALAGHKASHRKPVG-----------------------------VVD 94
           Y+CK CN++FP+ QAL GH+ASH+KP                               V +
Sbjct: 104 YECKTCNRTFPSFQALGGHRASHKKPKIMAEEKKPPSPPSQQPRPQSSSHDSQSDNLVAN 163

Query: 95  DDQSETA--------SAFTTSKTISKVISVN-VKTHECSICHRTFPSGQALGGHKRRH 143
            D+ E A        S    +  +   I+ N  K HECSIC   F SGQALGGH RRH
Sbjct: 164 SDEYEEAEKPRGPMVSFQMGNHGLKAAINGNKAKIHECSICGSEFTSGQALGGHMRRH 221


>IMGA|Medtr5g106680.1 Zinc finger, C2H2-type
           chr05_pseudomolecule_IMGAG_V3 42922785-42923624 H
           EGN_Mt090430 20090702
          Length = 279

 Score = 66.2 bits (160), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 52/105 (49%), Gaps = 24/105 (22%)

Query: 64  YKCKLCNKSFPNHQALAGHKASHRKPVG--------VVDDDQSETASAFTT--SKTISKV 113
           + C  CNK F +HQAL GH+ASH+   G        +     S T   F T    T+++ 
Sbjct: 130 FVCSCCNKVFGSHQALGGHRASHKNVKGCFANTTTTITASSNSTTGRTFMTPHDDTMTRG 189

Query: 114 ISVNVKT--------------HECSICHRTFPSGQALGGHKRRHY 144
            +V V+               H+CSIC R F +GQALGGHKR H+
Sbjct: 190 GNVEVEGEAVNNNEMINCIIGHKCSICLRVFSTGQALGGHKRCHW 234


>IMGA|Medtr2g114530.1 Zinc finger, C2H2-type
           chr02_pseudomolecule_IMGAG_V3 27103326-27103951 E
           EGN_Mt090430 20090702
          Length = 133

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/109 (38%), Positives = 57/109 (52%), Gaps = 28/109 (25%)

Query: 37  CLLMLAK-GTTAATNYDHSSPSPSLELC-YKCKLCNKSFPNHQALAGHKASHRKPVGVVD 94
           CL++L+K G T   N        +L+ C +KCK CNK F + QAL GH+ASH++P     
Sbjct: 13  CLMLLSKVGETKEPN--------TLKECGFKCKTCNKEFSSFQALGGHRASHKRP----- 59

Query: 95  DDQSETASAFTTSKTISKVISVNVKTHECSICHRTFPSGQALGGHKRRH 143
                        K + K+ ++  K H C IC   F  GQALGGH R+H
Sbjct: 60  -------------KLMYKLPNMKPKMHPCPICGLEFSIGQALGGHMRKH 95


>IMGA|Medtr4g036160.1 Zinc finger, C2H2-type
           chr04_pseudomolecule_IMGAG_V3 8812372-8810265 H
           EGN_Mt090430 20090702
          Length = 461

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 38/76 (50%), Gaps = 18/76 (23%)

Query: 119 KTHECSICHRTFPSGQALGGHKRRHYXXXXX------------XXXXXXXXRFDSEKKGM 166
           K HECSICHR+F SGQALGGHKR H+                         +FD+  + +
Sbjct: 285 KVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDQIEQIPKFDNSSEPI 344

Query: 167 DLSLISQHDFDLNLPA 182
           DL L      DLNLPA
Sbjct: 345 DLKL------DLNLPA 354


>IMGA|Medtr8g105670.1 Zinc finger, C2H2-type
           chr08_pseudomolecule_IMGAG_V3 23397299-23398474 F
           EGN_Mt090430 20090702
          Length = 315

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 36/130 (27%)

Query: 31  EEYLALCLLMLAKGTTA-----ATNYDHSSPSPSLELCYKCKL------------CNKSF 73
           EE +A+CL+ML++   +       N +      S+E   K KL            C K+F
Sbjct: 158 EEDVAMCLMMLSRDKWSRKMNNVNNVEQEEDEGSVEKISKVKLLKRVRGKHLCENCGKTF 217

Query: 74  PNHQALAGHKASHRKPVGVVDDDQSETASAFTTSKTISKVISVNVKTHECSICHRTFPSG 133
            + +AL  H++       +   D+++  +                K  EC  C + F SG
Sbjct: 218 RSSRALGSHRS-------ICCRDEAKNGNGNDD------------KIFECPFCFKVFGSG 258

Query: 134 QALGGHKRRH 143
           QALGGHKR H
Sbjct: 259 QALGGHKRSH 268


>IMGA|Medtr2g122790.1 Zinc finger, C2H2-type
           chr02_pseudomolecule_IMGAG_V3 29599255-29600247 H
           EGN_Mt090430 20090702
          Length = 330

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 14/93 (15%)

Query: 64  YKCKLCNKSFPNHQALAGHKASH-------------RKPVGVVDDDQSETASAFTTSKTI 110
           ++C +C K+F N +AL GH+ SH             + P  +  ++   +   +   + I
Sbjct: 138 HECNICGKTFSNGKALGGHRRSHFLKKKLNHHPQKVKSPFSIQGNNNRASFDDYDDEEEI 197

Query: 111 SKVISVNVKTHECSICHRTFPSGQALGGHKRRH 143
              I   +K   CSIC + FP+  AL GH R H
Sbjct: 198 G-GIKKPIKKPTCSICEKKFPTKNALYGHMRSH 229