Jatropha Genome Database

JcCA0066671.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066671.20 + phase: 0 /pseudo
         (501 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr6g080620.1 Serine/threonine protein phosphatase 7 long...    69   8e-12
IMGA|Medtr7g094200.1 hypothetical protein chr07_pseudomolecule_I...    51   1e-06
IMGA|Medtr5g022780.1 hypothetical protein chr05_pseudomolecule_I...    50   2e-06
IMGA|Medtr3g012610.1 Beta tubulin, autoregulation binding site c...    50   3e-06

>IMGA|Medtr6g080620.1 Serine/threonine protein phosphatase 7 long
           form homolog, related chr06_pseudomolecule_IMGAG_V3
           16204778-16202363 E EGN_Mt090430 20090702
          Length = 578

 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 101/242 (41%), Gaps = 19/242 (7%)

Query: 50  KELLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPFGIRPIELYDDWRTEVSPDRM 109
           + ++ AL ERW   T+TFHF  GE T+T  D  ++ G+PFG   +         +  +  
Sbjct: 63  RHIVTALVERWRSETHTFHFRTGECTITLEDVYILLGLPFGGPVVTA----PPNLPWNNC 118

Query: 110 VELIGIDLPRIVGPGSATPALSVSRRWLYLQ-APGIYARHRRGELTASQVARFTLLLMFA 168
            +L+G     I  P   T   ++S  WL        ++     E+      R+ LL +F 
Sbjct: 119 AQLLG-----ITHPAHKTDGFTLSLSWLKDNLIDNNFSEQSPPEVKIQHTRRY-LLYLFE 172

Query: 169 STFWSNRKERF-NPSILKSLENLAHLTEYDWAGAILSRMYDDMCDLSRSHCK-LSGTYYF 226
              + N    F + S L  L +      Y W  A+L+ +Y  +C+ S  + K L G ++ 
Sbjct: 173 GFLFPNTTGLFVHNSWLYLLMDFNETRNYSWGSAVLTYLYRGLCEASHPNIKALFGCHFL 232

Query: 227 WEIWAFEYFPYTRPEQ---IQADLGLGLVPLAWRWYRTNLH-TSRHRHSLKDLRIFFDTL 282
            ++W +    Y  P+    +Q  LGL       R+Y    H T  +R    D  I     
Sbjct: 233 LQVWGYCRLSYIAPKNDNPLQWPLGLKWTGAGSRYYENPSHDTISYRKKFDD--ILEHQF 290

Query: 283 KW 284
           KW
Sbjct: 291 KW 292


>IMGA|Medtr7g094200.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 21294812-21292307 E
           EGN_Mt090430 20090702
          Length = 563

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 134 RRWLYLQAPGIYARHRRGELTASQVARFTLLLMFASTFWSNRK-ERFNPSILKSLENLAH 192
           + WLY     ++ RH + ++     +R  +LL+   T +SN+     +   L   E+L++
Sbjct: 246 QEWLY----DLFVRHCKTDMF-EYASRAYMLLLVGCTIFSNKSITLVDAKYLSLFEDLSN 300

Query: 193 LTEYDWAGAILSRMYDDMCDLSRSHCKLSGTY-YFWEIWAFEYFPY--TRPEQIQA--DL 247
              Y W  A L  +Y+ + + S   CK  G Y    + W +EYFP    R E   A  + 
Sbjct: 301 CGRYCWGAASLVTLYEHLGNGSMMSCKQLGGYATLLQCWIYEYFPTLGNRVENRVACDEP 360

Query: 248 GLGLV-PLAWRWYRTNLHTSRHRHSLKDL 275
           G+G+   + W++ R NL   + R  + DL
Sbjct: 361 GMGVARAMRWKYPRGNLKVDQIRRMIDDL 389


>IMGA|Medtr5g022780.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 8902349-8901212 E
           EGN_Mt090430 20090702
          Length = 272

 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 15/227 (6%)

Query: 52  LLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPFGIRPIELYDDWRTEVSPDRMVE 111
           ++ A+ ERW   T++FH   G+MT+T  D   +  IP   R ++  +    E + D M  
Sbjct: 1   MIRAMCERWHTETSSFHLLVGDMTITLDDVHHLLHIPIHGRMLDHDEAMGQERAIDLMTR 60

Query: 112 LIGIDLPRIVGPGSATPALSVSRRWLYLQAPGIYARHRRGELTASQ------------VA 159
           L+G+             A+ ++   L     G     RR E   ++              
Sbjct: 61  LLGMSDADARAETMTESAVHINYPTLKRVYEGHLTEARRLEDPQTREELQERARRRQWCV 120

Query: 160 RFTLLLMFASTFWSNRKERFNPSI-LKSLENLAHLTEYDWAGAILSRMYDDMCD-LSRSH 217
           R  LL +     ++N+  R    I L  + +L  + ++ W G  L+ +YD + D +  ++
Sbjct: 121 RSFLLYLVGCALFTNKTNRHIDLIYLDCMADLQAIGKWSWGGMALAYLYDYLDDSVILNN 180

Query: 218 CKLSGTYYFWEIWAFEYFPYTRPEQIQADLGLGLVPLAWRWYRTNLH 264
             ++G+   +  W  E+ P   P + + +      P A RW  +  H
Sbjct: 181 RTMAGSTTLFMGWILEHLPGLYPRK-KNNEWTSERPCAGRWLTSKEH 226


>IMGA|Medtr3g012610.1 Beta tubulin, autoregulation binding site
           chr03_pseudomolecule_IMGAG_V3 2096642-2098249 H
           EGN_Mt090430 20090702
          Length = 442

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 107/264 (40%), Gaps = 18/264 (6%)

Query: 52  LLGALAERWWDTTNTFHFSWGEMTMTPVDFSVITGIPFGIRPIELYDDWRTEVSPDRMVE 111
           ++ A+ ERW   T++FH   GEMT+T  D   +  I    R ++  +    E + D M  
Sbjct: 38  MIHAMCERWHTETSSFHLPVGEMTITLDDVHNLLHIRIHGRMLDHDEAMGQERAIDMMTR 97

Query: 112 LIGI---DLPRIVGPGSATPALSVSRRWLYLQAPGIYARHRRGELTASQVARFTLLLMFA 168
           L+G+   D    +GP   T A    RR   L+ P      +          R  LL +  
Sbjct: 98  LLGMSDADARLRLGPSLLTEA----RR---LEDPQTREELQERVRRRQWCVRSFLLYLVG 150

Query: 169 STFWSNRKERFNPSI-LKSLENLAHLTEYDWAGAILSRMY---DDMCDLSRSHCKLSGTY 224
              ++N+  R    I L  + +L  + +    G +L+ +Y   DD   L+     ++G+ 
Sbjct: 151 CAMFTNKTNRHIDLIYLDCMADLQAIGKLSRGGMVLAYLYHYLDDSVILNNR--TMAGST 208

Query: 225 YFWEIWAFEYFPYTRPEQIQADLGLGLVPLAWRWYRTNLHTSRHRHSLKDLRIFFDTLKW 284
             +  W  E+ P   P +          P A RW  +  HT  H + L   R+  D +++
Sbjct: 209 TLFMGWILEHLPGPYPRKKNRSWTPER-PCAGRWLTSRGHTDVHHYRLLLDRLEVDDVRF 267

Query: 285 GRWPPIYRAG-FKLIPISSDQMTC 307
             +        F+L+   S+ + C
Sbjct: 268 STYSDHREVRPFQLLCTYSEWVMC 291