Jatropha Genome Database

JcCA0066671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066671.10 - phase: 2 /partial
         (78 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g089720.1 hypothetical protein chr04_pseudomolecule_I...   118   6e-28
IMGA|Medtr5g040390.1 hypothetical protein chr05_pseudomolecule_I...    46   5e-06

>IMGA|Medtr4g089720.1 hypothetical protein
           chr04_pseudomolecule_IMGAG_V3 18755058-18748439 E
           EGN_Mt090430 20090702
          Length = 321

 Score =  118 bits (296), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 54/65 (83%), Positives = 60/65 (92%)

Query: 1   FFNSHDREFHVASLPYKPDFKVMPEGWDGTIKDLDEVHYEISMKEDEMLYQEFVQKMNFN 60
           FF SHDREFHVASLPYKPDFKVMPEGWDG  KDLDEVHYEIS KED+MLY++FV+KMNFN
Sbjct: 187 FFISHDREFHVASLPYKPDFKVMPEGWDGITKDLDEVHYEISKKEDDMLYRDFVEKMNFN 246

Query: 61  KMKVS 65
           K K++
Sbjct: 247 KKKMA 251


>IMGA|Medtr5g040390.1 hypothetical protein
           chr05_pseudomolecule_IMGAG_V3 17249342-17255538 E
           EGN_Mt090430 20090702
          Length = 299

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 43/65 (66%), Gaps = 1/65 (1%)

Query: 1   FFNSHDREFHVASLPYKPDFKVMPEGWDGTIKDLDEVHYEISMKEDEMLYQEFVQKMNFN 60
            F+SH+ + + A  P   +FK MP+GW+   K+ D   +E+S +E+++L QEF +++ ++
Sbjct: 170 IFDSHNNDLNNAKDPTS-EFKNMPDGWETISKNQDGNIWEMSQREEDILMQEFERRIAYS 228

Query: 61  KMKVS 65
           K +++
Sbjct: 229 KFQIA 233