Jatropha Genome Database

JcCA0066651.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066651.20 + phase: 0 /pseudo
         (368 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g120880.1 MCM; Nucleic acid-binding, OB-fold, subgrou...   404   e-113
IMGA|Medtr7g068330.1 MCM chr07_pseudomolecule_IMGAG_V3 13985385-...   104   6e-23
IMGA|Medtr7g132920.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    70   1e-12
IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    69   5e-12
IMGA|Medtr4g165910.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    68   9e-12
IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    64   1e-10
IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    64   2e-10
IMGA|Medtr2g009230.1 MCM; Nucleic acid-binding, OB-fold, subgrou...    53   2e-07

>IMGA|Medtr7g120880.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr07_pseudomolecule_IMGAG_V3 28341732-28334597 H
           EGN_Mt090430 20090702
          Length = 842

 Score =  404 bits (1038), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/356 (58%), Positives = 252/356 (70%), Gaps = 43/356 (12%)

Query: 21  ASNSMEILAVYFPTNDFSVDEDKLMLISDLIHFFSTSLGQDLASQVKEENGAFFLPIDFE 80
           ++NS E++  YFP   F+V++  L L S L  FFS+S+GQ++ SQV+ E G + L +DF+
Sbjct: 14  STNSFELMNFYFPQQLFTVEQTWLNLTSSLFSFFSSSIGQNIVSQVRNEYGNYVLSLDFQ 73

Query: 81  QFRKICDVEEFYVILEEKPKVALSCLGAAVHKVLSTKCEENILQVGAKINIRLHNYPESM 140
           Q +  C VEEFY +L EKPK+AL C+  AVH VL +K E +  ++ AK++IRL N PE+M
Sbjct: 74  QLKNTCHVEEFYEMLTEKPKIALLCMSVAVHTVLLSKWESDKPELAAKVDIRLRNCPETM 133

Query: 141 IALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPDGKFSPPTIC 200
           IALKNLKAAYIDKLVSVRGT VK STVRPLVV+MSF+C KCK +I RIFPDGKFSPP+ C
Sbjct: 134 IALKNLKAAYIDKLVSVRGTAVKASTVRPLVVEMSFECIKCKQSITRIFPDGKFSPPSTC 193

Query: 201 NLNGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVECELTEDLVDACIPG 260
           NLNGCKS+ F+P+RS+AQ +DFQKIR+QELL+ EDHEEGRVPRTVECELT DLVD+CIPG
Sbjct: 194 NLNGCKSKNFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELTHDLVDSCIPG 253

Query: 261 DVVTVTGIIRTINNYVDIGG---------------------------------------- 280
           DVVTVTGIIR INNY+DIGG                                        
Sbjct: 254 DVVTVTGIIRGINNYMDIGGGMIFQLLVLVILPTCWPVLQVTTCLDVYVNCEGMLKFLAG 313

Query: 281 ---GKLKGKNQGFYYLYLEGVSIKNSKSQSTSFDFQDSKSNARATELSDLFSFSPR 333
              GK K +NQGFYYLYLE VSI NSKSQS   D QDS + AR TEL DLFSFS +
Sbjct: 314 IYSGKSKNRNQGFYYLYLEVVSIVNSKSQSIPDDSQDSHAKARPTELFDLFSFSSK 369


>IMGA|Medtr7g068330.1 MCM chr07_pseudomolecule_IMGAG_V3
           13985385-13988029 H EGN_Mt090430 20090702
          Length = 221

 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/73 (73%), Positives = 59/73 (80%)

Query: 261 DVVTVTGIIRTINNYVDIGGGKLKGKNQGFYYLYLEGVSIKNSKSQSTSFDFQDSKSNAR 320
           +VVTVTGIIR INNY+DIGGGK K +NQGFYYLYLE VSI NSKSQS   D QDS + AR
Sbjct: 27  NVVTVTGIIRGINNYMDIGGGKSKNRNQGFYYLYLEVVSIVNSKSQSIPDDSQDSHAKAR 86

Query: 321 ATELSDLFSFSPR 333
            TEL DLFSFS +
Sbjct: 87  PTELFDLFSFSSK 99


>IMGA|Medtr7g132920.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr07_pseudomolecule_IMGAG_V3 30928106-30922243 E
           EGN_Mt090430 20090702
          Length = 720

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 22/207 (10%)

Query: 143 LKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNI-----ARIFPDGKFSPP 197
           ++ +KA+ I +LV + G V + S V+PL+    + CE C   I     AR+F      P 
Sbjct: 145 IREVKASNIGQLVRIAGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPS 204

Query: 198 TICNLNGCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVECELTEDLVDAC 257
             C +N  K      +R+S + + FQ+ +IQEL  +E   +G +PRT+   L  +L    
Sbjct: 205 KRCVMNKSKGNVILQLRAS-KFLRFQEAKIQEL--AEHVPKGHIPRTMTVHLRGELTRKV 261

Query: 258 IPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFYY-LYLEGVSIKNSKSQSTSFDF--QD 314
            PGDVV ++GI   I  YV       +    G     YLE +S+ + K +   ++    +
Sbjct: 262 SPGDVVELSGIFLPI-PYV-----GFRAMRAGLVADTYLEAMSVTHFKKKYEEYELIGDE 315

Query: 315 SKSNARATELSDLF-----SFSPRGFG 336
            +   R  E  D++     S +P  FG
Sbjct: 316 EEQIKRLAEDGDIYDKLARSLAPEIFG 342


>IMGA|Medtr4g096540.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr04_pseudomolecule_IMGAG_V3 20349558-20344347 E
           EGN_Mt090430 20090702
          Length = 840

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 96/182 (52%), Gaps = 12/182 (6%)

Query: 129 INIRLHNYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCK--SNIA 186
           +  R+ N  +S  +++NL  + I+++VS++G +++ S++ P + +  F C  C   S+  
Sbjct: 218 VQTRIFNL-KSSTSMRNLNPSDIERMVSMKGMIIRCSSIIPEIREAIFRCLVCGFCSDPV 276

Query: 187 RIFPDGKFSPPTICNLNGCKSR-TFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTV 245
            +   G+ + PT+C    C+SR +   + +  +  D Q +R+QE    ++  EG  P TV
Sbjct: 277 PV-ERGRIAEPTVCLREECQSRNSMTLVHNRCKFSDKQIVRLQET--PDEIPEGGTPHTV 333

Query: 246 ECELTEDLVDACIPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFYYLYLEGVSI-KNSK 304
              L + LVD   PGD V VTGI R ++  V    G  +   +  +  Y++ + I K SK
Sbjct: 334 SLLLHDKLVDTGKPGDRVEVTGIYRAMSVRV----GPTQRTVKSLFKTYIDCLHIKKTSK 389

Query: 305 SQ 306
           S+
Sbjct: 390 SR 391


>IMGA|Medtr4g165910.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr04_pseudomolecule_IMGAG_V3 41900221-41894142 E
           EGN_Mt090430 20090702
          Length = 773

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 29/200 (14%)

Query: 144 KNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPDGKFSPPTICNLN 203
           ++L + +I  +V V G + K S VRP VV+    C    S  +R + D         NL 
Sbjct: 109 RDLLSEFIGSMVCVEGIITKCSLVRPKVVKSVHFCPTTGSFTSRDYRD------ITSNL- 161

Query: 204 GCKSRTFHPIRSSAQAV-----------DFQKIRIQELLRSEDHEEGRVPRTVECELTED 252
           G  + + +P R  +  +           D Q + +QE+   E+   G++PRTV+    +D
Sbjct: 162 GLPTGSVYPTRDESGNLLVTEYGMCKYKDHQTLSMQEV--PENSAPGQLPRTVDIIAEDD 219

Query: 253 LVDACIPGDVVTVTGIIRTINNYVDIGGGKLKGKNQGFY--YLYLEGVSIKNSKSQSTSF 310
           LVD+C PGD V + GI + +        GK KG   G +   L    VS+ N ++ +  +
Sbjct: 220 LVDSCKPGDRVAIVGIYKALP-------GKSKGSVNGVFRTVLIANNVSLLNKEANAPIY 272

Query: 311 DFQDSKSNARATELSDLFSF 330
             +D K+  +  E  D F  
Sbjct: 273 SPEDLKNIKKIAERDDTFDL 292


>IMGA|Medtr8g137340.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 32903343-32908349 E
           EGN_Mt090430 20090702
          Length = 883

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 18/200 (9%)

Query: 75  LPIDFEQFRKICDVEEFYVILEEKPKVALSCLGAAVHKVLSTKCEENILQVGAKINIRLH 134
           L ID++QF  I       + L + P   L  +   V K +      N   +  KI +R+ 
Sbjct: 208 LEIDYKQF--IYVHPNIAIWLADAPHSVLEVM-EDVAKSVVFNLHANYKHIHQKIYVRIT 264

Query: 135 NYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPDGKF 194
           N P     ++N++  +++ ++ + G V + S V P + Q+ +DC KC + +   F +  +
Sbjct: 265 NLP-VYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCGKCGAVLGPFFQNS-Y 322

Query: 195 SPPTICNLNGCKSRTFHPIRSSAQAV---DFQKIRIQE---LLRSEDHEEGRVPRTVECE 248
           S   + +   C+S+   P   + +     +FQK+ +QE   ++ +     GR+PR  E  
Sbjct: 323 SEVKVGSCPECQSKG--PFTVNIEQTIYRNFQKLTLQESPGIVPA-----GRLPRYKEVI 375

Query: 249 LTEDLVDACIPGDVVTVTGI 268
           L  DL+D   PG+ + VTG+
Sbjct: 376 LLNDLIDCARPGEEIEVTGV 395


>IMGA|Medtr8g137330.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 32897406-32892230 E
           EGN_Mt090430 20090702
          Length = 929

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 96/200 (48%), Gaps = 18/200 (9%)

Query: 75  LPIDFEQFRKICDVEEFYVILEEKPKVALSCLGAAVHKVLSTKCEENILQVGAKINIRLH 134
           L ID++QF  I       + L + P   L  +   V K +      N   +  KI +R+ 
Sbjct: 254 LEIDYKQF--IYVHPNIAIWLADAPHSVLEVM-EDVAKSVVFNLHANYKHIHQKIYVRIT 310

Query: 135 NYPESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPDGKF 194
           N P     ++N++  +++ ++ + G V + S V P + Q+ +DC KC + +   F +  +
Sbjct: 311 NLP-VYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCGKCGAVLGPFFQNS-Y 368

Query: 195 SPPTICNLNGCKSRTFHPIRSSAQAV---DFQKIRIQE---LLRSEDHEEGRVPRTVECE 248
           S   + +   C+S+   P   + +     +FQK+ +QE   ++ +     GR+PR  E  
Sbjct: 369 SEVKVGSCPECQSKG--PFTVNIEQTIYRNFQKLTLQESPGIVPA-----GRLPRYKEVI 421

Query: 249 LTEDLVDACIPGDVVTVTGI 268
           L  DL+D   PG+ + VTG+
Sbjct: 422 LLNDLIDCARPGEEIEVTGV 441


>IMGA|Medtr2g009230.1 MCM; Nucleic acid-binding, OB-fold, subgroup
           chr02_pseudomolecule_IMGAG_V3 1989579-2000046 H
           EGN_Mt090430 20090702
          Length = 581

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 10/140 (7%)

Query: 137 PESMIALKNLKAAYIDKLVSVRGTVVKVSTVRPLVVQMSFDCEKCKSNIARIFPD----G 192
           PE+  ++  ++  +   L++V+G V++   ++    +  + C+KC  +   + P+     
Sbjct: 29  PETFPSIGRVRVQHRGILLTVKGIVIRSGAIKMHEGERKYMCQKCNGSFT-VHPEVEARN 87

Query: 193 KFSPPTICNLN---GCKSRTFHPIRSSAQAVDFQKIRIQELLRSEDHEEGRVPRTVECEL 249
             S P+ C +     C    F  ++ +    D+Q+I++QE   ++    G +PR++   L
Sbjct: 88  SISLPSFCPIQRPKPCGGTKFEYVKDTTVCHDYQEIKVQE--STQVLGVGAIPRSILVIL 145

Query: 250 TEDLVDACIPGDVVTVTGII 269
            +DLVD    GD V VTG++
Sbjct: 146 KDDLVDVVKAGDDVIVTGLL 165