Jatropha Genome Database

JcCA0066621.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066621.20 - phase: 2 /partial
         (319 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g061820.1 Replication factor-A protein 1, N-terminal ...   452   e-128
IMGA|Medtr5g027080.1 Zinc finger, CCHC-type; Replication factor-...   377   e-105
IMGA|Medtr8g115980.1 Nucleic acid-binding, OB-fold, subgroup chr...    65   3e-11
IMGA|Medtr8g116530.1 Nucleic acid-binding, OB-fold, subgroup chr...    65   3e-11
IMGA|Medtr8g074820.1 Nucleic acid-binding, OB-fold, subgroup chr...    62   4e-10
IMGA|Medtr6g062630.1 Nucleic acid-binding, OB-fold, subgroup chr...    55   4e-08
IMGA|Medtr2g008720.1 Nucleic acid-binding, OB-fold, subgroup chr...    55   4e-08
IMGA|Medtr2g055810.1 Protein of unknown function DUF223, Arabido...    52   4e-07

>IMGA|Medtr3g061820.1 Replication factor-A protein 1, N-terminal
           chr03_pseudomolecule_IMGAG_V3 14128530-14131311 E
           EGN_Mt090430 20090702
          Length = 584

 Score =  452 bits (1164), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 213/329 (64%), Positives = 271/329 (82%), Gaps = 11/329 (3%)

Query: 1   NAENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQ 60
           N E+N+I DVIG+VTSVN SV + R+N +E ++RILNLKD SGRSVELTL G+ CN+EGQ
Sbjct: 256 NIESNTILDVIGVVTSVNSSVLMSRENALEMRKRILNLKDNSGRSVELTLWGELCNREGQ 315

Query: 61  KLQEIVDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNA 120
           +L++IVD+G FPVLAVKAGKV +F GKS+  I  ++LF+NPD PEA S++ WFD+ G+++
Sbjct: 316 ELKDIVDAGGFPVLAVKAGKVIEFRGKSINAIPISRLFVNPDFPEAQSLRLWFDQDGKDS 375

Query: 121 TSVSISRDIMPGAPKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKTDTFCYTACPL 180
            S SIS+DI  G PKNE+RKTVSQIKDEGLG +DKPDW+T  A I+F+KTD FCYTACP+
Sbjct: 376 ASSSISKDISYGGPKNELRKTVSQIKDEGLGCTDKPDWITTRATISFMKTDVFCYTACPV 435

Query: 181 MIGDRQCNKKVTRSG-----------NSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITW 229
           MIGDR+CNKKVTRSG           N+RW+CD CNQEFD C+YRY+LQAQI DHTG+T 
Sbjct: 436 MIGDRRCNKKVTRSGERCSKKVTKTVNTRWKCDTCNQEFDVCEYRYILQAQIVDHTGLTC 495

Query: 230 VTAFQESGEQILGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQR 289
           VTAF E+GE I+GY AK++Y+LK E +D+ RF DI++SILF Q++FRLKI++E+ G+EQ+
Sbjct: 496 VTAFNEAGEDIMGYSAKDLYVLKYEQEDDERFRDIIKSILFNQFVFRLKIQKELCGEEQK 555

Query: 290 VKITVVKADKVDYSSESRYLLDLISKHPR 318
           VKI VVKADKV+YS+ES+Y+LDLISK  R
Sbjct: 556 VKIIVVKADKVNYSAESKYMLDLISKFER 584


>IMGA|Medtr5g027080.1 Zinc finger, CCHC-type; Replication factor-a
           protein 1 Rpa1 chr05_pseudomolecule_IMGAG_V3
           10983831-10986583 E EGN_Mt090430 20090702
          Length = 803

 Score =  377 bits (967), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/316 (59%), Positives = 247/316 (78%), Gaps = 3/316 (0%)

Query: 1   NAENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQ 60
           N +NNSI DVI +VTS++P+  I+RKNG ETQ+R L LKD SGRSVELT+ G FCN EGQ
Sbjct: 295 NMQNNSIVDVIAVVTSISPTASIIRKNGTETQKRSLQLKDMSGRSVELTVWGSFCNTEGQ 354

Query: 61  KLQEIVDSGVFPVLAVKAGKVSDFSGKSLGTISSTQLFINPDIPEAYSVKDWFDRGGQNA 120
           KLQ I DSG FP+L VK+ +V+DF+GKS+GTI+++QL + PD PEA++++ WFD+ G+N 
Sbjct: 355 KLQNICDSGEFPILVVKSARVNDFNGKSIGTIATSQLLVEPDFPEAFTLRGWFDQEGRNV 414

Query: 121 TSVSISRDIMPGAPKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKTDTFCYTACPL 180
            S SISR+      K+E++KT+SQIKDE LG SDKPDW+++ A + F K D F YTACP 
Sbjct: 415 PSQSISRESSSFG-KSEVQKTISQIKDENLGTSDKPDWISICANVVFFKYDNFYYTACPN 473

Query: 181 MIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESGEQI 240
           MIGDR+CNKKVT +G+  W C+RC+     CDYRYLLQ QIQDHTG+TWVTAFQE GE I
Sbjct: 474 MIGDRKCNKKVTDNGDKTWHCERCDTSL-SCDYRYLLQMQIQDHTGMTWVTAFQEGGEDI 532

Query: 241 LGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIKEEMYGDEQRVKITVVKADK- 299
           +G PAK+++ +K E +DE +F +I+  ++F +Y+F+LK+KEE + DE RVK TVVKA+K 
Sbjct: 533 MGMPAKDLFSVKFEEKDEEKFKEIISKVVFTKYMFKLKVKEETFNDEARVKSTVVKAEKI 592

Query: 300 VDYSSESRYLLDLISK 315
           V+++SES+ LLDLI K
Sbjct: 593 VNFASESKSLLDLIDK 608


>IMGA|Medtr8g115980.1 Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 26187121-26184195 E
           EGN_Mt090430 20090702
          Length = 482

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 125/276 (45%), Gaps = 19/276 (6%)

Query: 9   DVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQKLQEIVDS 68
           DVIG +  V+P       NG +     L+L DGSG  +++TL  D+     QKL + + +
Sbjct: 165 DVIGFIIDVDPIEEKTTVNG-KVDMLSLHLGDGSGNVLKVTLWDDYAPMFNQKLIDQMHA 223

Query: 69  GVFPVLAV-KAGKVSDFSGK-SLGTISSTQLFINPDIPEAYSVKDWFDRGGQNATSVSIS 126
              P +A+  +  V  + G+  + +  ST ++IN D PE   +       G+N    S+ 
Sbjct: 224 TPKPNVAIFTSTLVKQYQGELYVSSSRSTTIYINIDTPEVADL--ILSSKGKN----SVL 277

Query: 127 RDIMPGAPKNEIRKTVSQIKDEGLGRSDKPDWV--TVSARITFVKTDTFCYTACPLMIGD 184
           +     +  N   KT+S++    +    + D V   V+     +  +   Y +CP     
Sbjct: 278 KTTETLSLTNVDVKTISELLSMAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCP----- 332

Query: 185 RQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESGEQILGYP 244
             C K V+ S  + + C+ C ++ D    RY L+ Q+ D T  T    F E  EQ+    
Sbjct: 333 -HCRKTVS-STETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTIFVLFAEVAEQLAQLK 390

Query: 245 AKEMYL-LKNELQDETRFADILRSILFEQYLFRLKI 279
             ++   L+N+   ++     L+ I+  +++F++K+
Sbjct: 391 LDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKL 426


>IMGA|Medtr8g116530.1 Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 26433595-26436521 H
           EGN_Mt090430 20090702
          Length = 474

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 125/276 (45%), Gaps = 19/276 (6%)

Query: 9   DVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQKLQEIVDS 68
           DVIG +  V+P       NG +     L+L DGSG  +++TL  D+     QKL + + +
Sbjct: 157 DVIGFIIDVDPIEEKTTVNG-KVDMLSLHLGDGSGNVLKVTLWDDYAPMFNQKLIDQMHA 215

Query: 69  GVFPVLAV-KAGKVSDFSGK-SLGTISSTQLFINPDIPEAYSVKDWFDRGGQNATSVSIS 126
              P +A+  +  V  + G+  + +  ST ++IN D PE   +       G+N    S+ 
Sbjct: 216 TPKPNVAIFTSTLVKQYQGELYVSSSRSTTIYINIDTPEVADL--ILSSKGKN----SVL 269

Query: 127 RDIMPGAPKNEIRKTVSQIKDEGLGRSDKPDWV--TVSARITFVKTDTFCYTACPLMIGD 184
           +     +  N   KT+S++    +    + D V   V+     +  +   Y +CP     
Sbjct: 270 KTTETLSLTNVDVKTISELLSMAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCP----- 324

Query: 185 RQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWVTAFQESGEQILGYP 244
             C K V+ S  + + C+ C ++ D    RY L+ Q+ D T  T    F E  EQ+    
Sbjct: 325 -HCRKTVS-STETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTIFVLFAEVAEQLAQLK 382

Query: 245 AKEMYL-LKNELQDETRFADILRSILFEQYLFRLKI 279
             ++   L+N+   ++     L+ I+  +++F++K+
Sbjct: 383 LDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKL 418


>IMGA|Medtr8g074820.1 Nucleic acid-binding, OB-fold, subgroup
           chr08_pseudomolecule_IMGAG_V3 14966093-14963637 H
           EGN_Mt090430 20090702
          Length = 575

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 117/254 (46%), Gaps = 34/254 (13%)

Query: 1   NAENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQ 60
             E + + DV+G+VT+V+     +R +G  T+  I  + D SG+ +E  L G++      
Sbjct: 132 TVEYDYLVDVMGLVTAVSEEREYVR-DGSVTKMIIFEVTDHSGK-IECALFGEYV----A 185

Query: 61  KLQEIVDSGV--FPVLAVKAGKVSDFSGKSL--GTISSTQLFINPDIPEAYSVKD-WFDR 115
                V  G    PV+ V+  KV  F  K+       +T+L +NPD+PE  + KD     
Sbjct: 186 LWNGFVSKGFEGLPVVVVQFAKVKIFRDKATLQNVKGTTRLIVNPDVPEVIAFKDRLIGL 245

Query: 116 GGQNATSVSISRDIMPGAPKNE-------IRKTVSQIKDEGLGRSDKPDWVTVSARIT-F 167
           G Q   ++++     P  P  E        +KT+SQ     L  S++  +  VSA ++ F
Sbjct: 246 GIQVPPTLTVLGG--PSKPSMEEEFLRMYPKKTISQ-----LFNSEEDGFFVVSAIVSGF 298

Query: 168 VKTDTFCYTACPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGI 227
           V+ + + Y AC       +C++ VT + +  + C  C++   +   RY ++ ++ D TG 
Sbjct: 299 VEGEEWWYPAC-------KCHRSVT-ADSGAYYCKGCDKHVIQMVPRYKIKLRVDDGTGD 350

Query: 228 TWVTAFQESGEQIL 241
           +    F      +L
Sbjct: 351 SVFVLFDSDVHYLL 364


>IMGA|Medtr6g062630.1 Nucleic acid-binding, OB-fold, subgroup
           chr06_pseudomolecule_IMGAG_V3 11526783-11530341 E
           EGN_Mt090430 20090702
          Length = 566

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 67/120 (55%), Gaps = 11/120 (9%)

Query: 7   IFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQKLQEIV 66
           + DVIG++T ++     +R +G  T+  ++ L D SG+  E TL G++ ++  + + + V
Sbjct: 137 LVDVIGLMTGISAEREFVR-DGKLTKILVIELTDHSGKC-ECTLFGNYVDELHKLMSKAV 194

Query: 67  DSGVFPVLAVKAGKVSDFSGK-SLGTI--SSTQLFINPDIPEAYSVKD----WFDRGGQN 119
           +    PV+ ++  KV  F GK S+  +  S+T++++NP  PEA   K+    WF    QN
Sbjct: 195 EGS--PVIVIQFAKVKIFRGKASIQNVVGSTTRIYLNPSFPEALKFKEGKEVWFTFSKQN 252


>IMGA|Medtr2g008720.1 Nucleic acid-binding, OB-fold, subgroup
           chr02_pseudomolecule_IMGAG_V3 1748523-1745291 H
           EGN_Mt090430 20090702
          Length = 479

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 119/290 (41%), Gaps = 31/290 (10%)

Query: 3   ENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQKL 62
           + + + D+IG++T V  S   L +NG  T+  ++ L+ G G  ++ TL G + +     L
Sbjct: 60  DTDYLVDIIGVLTGVG-SERELERNGNMTKLNVIELEAG-GFKIQCTLFGSYVDD----L 113

Query: 63  QEIVDSGVFP--VLAVKAGKVSDFSGK--SLGTISSTQLFINPDIPEAYSVKDWFDRGGQ 118
              + SG  P  ++ ++  K   F  K      I  T++   P    A S+++       
Sbjct: 114 NSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCIGCTKVIFKPTCDAAVSMRNRLSETVD 173

Query: 119 NATSVSISRDIMPGA---PKNEI-----RKTVSQIKDEGLGRSDKPDWVTVSARITFVKT 170
             + + +++ + P A   P+ E      R T+  +KD          +V +      V  
Sbjct: 174 TPSPLGLTQ-LQPEAKLDPREEFLYGTPRNTMQGLKDATTNEV----YVVLGTIKRIVNR 228

Query: 171 DTFCYTACPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITWV 230
           + F YTAC        C+K V    +  + C++C++   +   RY L+ +  DHT    +
Sbjct: 229 ENFWYTAC-------ICSKAVI-PDSQMFYCEKCDRHVKKVFSRYCLRVRAIDHTDCATL 280

Query: 231 TAFQESGEQILGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIK 280
             F +    +      +M         E      +  I+ + +LF+++ K
Sbjct: 281 VIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKVETK 330


>IMGA|Medtr2g055810.1 Protein of unknown function DUF223,
           Arabidopsis thaliana chr02_pseudomolecule_IMGAG_V3
           15046946-15043014 H EGN_Mt090430 20090702
          Length = 549

 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 65/305 (21%), Positives = 123/305 (40%), Gaps = 36/305 (11%)

Query: 3   ENNSIFDVIGIVTSVNPSVPILRKNGMETQRRILNLKDGSGRSVELTLGGDFCNKEGQKL 62
           + + + DV+G++ +V       R NG +++   + L D  G   ++TL G + ++    L
Sbjct: 134 DTDYLIDVMGMLKAVGVEKSYTR-NGSQSKMIPIEL-DYDGFRFKVTLFGPYVDELNAFL 191

Query: 63  QEIVDSGVFPVLAVKAGKVSDFSGKSL--GTISSTQLFINPDIPEAYSVKDWFDRGGQN- 119
                  V  V+AV   K+  F G++    TI++T++  NP    A  +K        + 
Sbjct: 192 ASGETENV--VVAVLLTKIKIFQGQATIQNTINATKVLFNPTFTAALLLKKRMVENDDSP 249

Query: 120 ---------ATSVSISRDIMPGAPKNEIRKTVSQIKDEGLGRSDKPDWVTVSARITFVKT 170
                    A+ VS+  D +  +P   +         EGL    +     V   +  +  
Sbjct: 250 SPGISKITEASKVSVEEDFLNLSPMTTV---------EGLKDCAEEKCFAVFGTVNVIVD 300

Query: 171 DT-FCYTACPLMIGDRQCNKKVTRSGNSRWQCDRCNQEFDECDYRYLLQAQIQDHTGITW 229
           D+ + YT+C +      CNKKV       + C +CN+       RY+++ ++ DHT    
Sbjct: 301 DSDWWYTSCVV------CNKKV-YPDEKMYFCSKCNKHVLNVTPRYMIKMRVVDHTDSAT 353

Query: 230 VTAFQESGEQILGYPAKEMYLLKNELQDETRFADILRSILFEQYLFRLKIK---EEMYGD 286
              F     ++      +M        D +     + +++ + YLF+++       MY  
Sbjct: 354 FVLFDRDAAELFKKTCADMIESCGMGTDASEVPKDILAMVEKSYLFKVETNLGSSTMYEK 413

Query: 287 EQRVK 291
             RVK
Sbjct: 414 SYRVK 418