Jatropha Genome Database

JcCA0066621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066621.10 + phase: 2 /partial
         (58 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g019460.1 Photosystem II protein PsbX chr01_pseudomol...    93   4e-20
IMGA|Medtr3g139380.1 ultraviolet-B-repressible protein, putative...    91   1e-19

>IMGA|Medtr1g019460.1 Photosystem II protein PsbX
           chr01_pseudomolecule_IMGAG_V3 3941585-3942128 F
           EGN_Mt090430 20090702
          Length = 125

 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 54/60 (90%), Gaps = 2/60 (3%)

Query: 1   LTAAALTASMVMPDVAEAA--ELSPSLKNFLLSIVAGGVVLTAIVGAVIGVANFDPVKRS 58
           LTA ALTASMV+PDVA AA  + SPSLKNFLLSI AGGVVLTAI+GAV+GV+NFDPVKR+
Sbjct: 66  LTAFALTASMVLPDVAHAAGNDFSPSLKNFLLSIAAGGVVLTAILGAVVGVSNFDPVKRT 125


>IMGA|Medtr3g139380.1 ultraviolet-B-repressible protein, putative
           chr03_pseudomolecule_IMGAG_V3 35854651-35853669 F
           EGN_Mt090430 20090702
          Length = 120

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 54/59 (91%), Gaps = 2/59 (3%)

Query: 1   LTAAALTASMVMPDVAEAA--ELSPSLKNFLLSIVAGGVVLTAIVGAVIGVANFDPVKR 57
           +TAA+LTASMV+PDVA AA  +LSPSL+NFLLSI AGG VLTAI+GAVIGV+NFDPVKR
Sbjct: 61  ITAASLTASMVIPDVAHAAGSDLSPSLQNFLLSIFAGGAVLTAILGAVIGVSNFDPVKR 119