Jatropha Genome Database

JcCA0066101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0066101.10 + phase: 1 /partial
         (67 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g096580.1 RhoGAP; Pleckstrin homology-type chr05_pseu...   102   4e-23
IMGA|Medtr3g149080.1 RhoGAP; Pleckstrin homology-type chr03_pseu...    85   8e-18
IMGA|Medtr5g075000.1 RhoGAP; Pleckstrin homology-type chr05_pseu...    79   4e-16

>IMGA|Medtr5g096580.1 RhoGAP; Pleckstrin homology-type
           chr05_pseudomolecule_IMGAG_V3 38375642-38385231 E
           EGN_Mt090430 20090702
          Length = 859

 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/67 (74%), Positives = 52/67 (77%)

Query: 1   TKVEGILRQSADXXXXXXXXXXXXXGKSEFEPDEDAHVVGDCVKHVLRELPSSPVPASCC 60
           TKVEGILRQSAD             GK EF+ +EDAHVVGDCVKHVLRELPSSPVPASCC
Sbjct: 183 TKVEGILRQSADVEEVDRRVQEYEQGKVEFDAEEDAHVVGDCVKHVLRELPSSPVPASCC 242

Query: 61  TALLEAY 67
           TALLEAY
Sbjct: 243 TALLEAY 249


>IMGA|Medtr3g149080.1 RhoGAP; Pleckstrin homology-type
           chr03_pseudomolecule_IMGAG_V3 38918438-38926130 H
           EGN_Mt090430 20090702
          Length = 743

 Score = 85.1 bits (209), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 41/65 (63%), Positives = 47/65 (72%)

Query: 2   KVEGILRQSADXXXXXXXXXXXXXGKSEFEPDEDAHVVGDCVKHVLRELPSSPVPASCCT 61
           +VEGILRQ+AD             GK +F P+EDAHV+GDC+KHVLR L SSPVPASCC 
Sbjct: 216 RVEGILRQAADVDDVERRVREYEQGKVDFAPNEDAHVIGDCIKHVLRGLLSSPVPASCCK 275

Query: 62  ALLEA 66
           ALLEA
Sbjct: 276 ALLEA 280


>IMGA|Medtr5g075000.1 RhoGAP; Pleckstrin homology-type
           chr05_pseudomolecule_IMGAG_V3 27198048-27211234 H
           EGN_Mt090430 20090702
          Length = 947

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 42/65 (64%)

Query: 2   KVEGILRQSADXXXXXXXXXXXXXGKSEFEPDEDAHVVGDCVKHVLRELPSSPVPASCCT 61
           KVEGILRQ+AD             GK EF   EDAHVV DCVKHVLREL S P+P SCC 
Sbjct: 234 KVEGILRQAADVEDVENRVREYEQGKVEFSEGEDAHVVADCVKHVLRELRSFPIPVSCCK 293

Query: 62  ALLEA 66
           ALL A
Sbjct: 294 ALLAA 298