Jatropha Genome Database

JcCA0065831.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0065831.30 - phase: 1 /partial/short
         (32 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g103260.1 Glyceraldehyde-3-phosphate dehydrogenase, t...    62   6e-11
IMGA|Medtr8g109660.1 Glyceraldehyde-3-phosphate dehydrogenase, t...    60   3e-10
IMGA|Medtr2g077990.1 Glyceraldehyde-3-phosphate dehydrogenase, t...    50   2e-07
IMGA|Medtr2g077990.2 Glyceraldehyde-3-phosphate dehydrogenase, t...    50   3e-07

>IMGA|Medtr3g103260.1 Glyceraldehyde-3-phosphate dehydrogenase, type
           I chr03_pseudomolecule_IMGAG_V3 25359130-25364058 E
           EGN_Mt090430 20090702
          Length = 340

 Score = 62.0 bits (149), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 31/32 (96%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           PEEIPWG+ GA++V+ESTGVFTDK+KAAAHLK
Sbjct: 87  PEEIPWGEVGADYVIESTGVFTDKDKAAAHLK 118


>IMGA|Medtr8g109660.1 Glyceraldehyde-3-phosphate dehydrogenase, type
           I chr08_pseudomolecule_IMGAG_V3 24655871-24652454 F
           EGN_Mt090430 20090702
          Length = 339

 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 29/32 (90%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           PEEIPW  TGA+ +VESTGVFTDK+KAAAHLK
Sbjct: 86  PEEIPWASTGADIIVESTGVFTDKDKAAAHLK 117


>IMGA|Medtr2g077990.1 Glyceraldehyde-3-phosphate dehydrogenase, type
           I chr02_pseudomolecule_IMGAG_V3 18112574-18118811 E
           EGN_Mt090430 20090702
          Length = 418

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 27/32 (84%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           P EIPWG  GA++V+ES+G+FT  EKA++HLK
Sbjct: 162 PVEIPWGDFGADYVIESSGIFTTLEKASSHLK 193


>IMGA|Medtr2g077990.2 Glyceraldehyde-3-phosphate dehydrogenase, type
           I chr02_pseudomolecule_IMGAG_V3 18112574-18118811 E
           EGN_Mt090430 20090702
          Length = 392

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/32 (62%), Positives = 27/32 (84%)

Query: 1   PEEIPWGQTGAEFVVESTGVFTDKEKAAAHLK 32
           P EIPWG  GA++V+ES+G+FT  EKA++HLK
Sbjct: 136 PVEIPWGDFGADYVIESSGIFTTLEKASSHLK 167