Jatropha Genome Database

JcCA0064141.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0064141.10 - phase: 0 /pseudo/partial
         (261 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g006430.1 Thiamine monophosphate synthase; Phosphomet...   340   3e-94
IMGA|Medtr2g006150.1 Thiamine monophosphate synthase; Phosphomet...   340   3e-94

>IMGA|Medtr2g006430.1 Thiamine monophosphate synthase;
           Phosphomethylpyrimidine kinase;
           chr02_pseudomolecule_IMGAG_V3 650591-645983 E
           EGN_Mt090430 20090702
          Length = 572

 Score =  340 bits (873), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 174/258 (67%), Positives = 205/258 (79%), Gaps = 13/258 (5%)

Query: 13  DASKAKIPHVLTVAGSDSGAGAGIQADLKTCAARGVFCSTVITAVTAQNTVGVQGVNIVP 72
           D+   KIPHVLTVAGSDSGAGAGIQADLKTC+AR V+CSTVITAVTAQNT+GVQGVNIVP
Sbjct: 76  DSELNKIPHVLTVAGSDSGAGAGIQADLKTCSARRVYCSTVITAVTAQNTLGVQGVNIVP 135

Query: 73  EDFVAEQLKSVLSDMQVDVVKTGMLPSIGIVNILRQSLREFPVRG--------SFGG*SC 124
            DFV  QL SVLSD+ VDVVKTGMLPS+ ++ +L QSLR+FPV+         S  G   
Sbjct: 136 HDFVQHQLNSVLSDINVDVVKTGMLPSLSVLKVLCQSLRKFPVKALVVDPVMISTSG--- 192

Query: 125 HGIYKWRCASWSFHSFLFS-ADIITPNIKEASALLGGTPLKTVADMRSAAKLLHAIGPRN 183
             I         F   L   ADI+TPN+KEASALLG  P+KTV+DMR+AAKL+H +GPR+
Sbjct: 193 -DILAGPSVLDGFREELLPMADIVTPNVKEASALLGDLPIKTVSDMRTAAKLIHDLGPRS 251

Query: 184 VLVKGGDLPDSLDAVDIFFDGKNYHELRASRIKTRNTHGTGCTLASCIAAELAKGSPMLS 243
           VLVKGGDLP+S +A+DIF+DG+ ++EL + R+ TRNTHGTGCT+ASCIAAELAKGS MLS
Sbjct: 252 VLVKGGDLPNSSEAIDIFYDGQEFYELSSPRVNTRNTHGTGCTMASCIAAELAKGSSMLS 311

Query: 244 AVKIAKRYVETALEYSKD 261
           AVKIAKR+VE ALEYS+D
Sbjct: 312 AVKIAKRFVEAALEYSRD 329


>IMGA|Medtr2g006150.1 Thiamine monophosphate synthase;
           Phosphomethylpyrimidine kinase;
           chr02_pseudomolecule_IMGAG_V3 548555-543945 E
           EGN_Mt090430 20090702
          Length = 576

 Score =  340 bits (873), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 174/258 (67%), Positives = 205/258 (79%), Gaps = 13/258 (5%)

Query: 13  DASKAKIPHVLTVAGSDSGAGAGIQADLKTCAARGVFCSTVITAVTAQNTVGVQGVNIVP 72
           D+   KIPHVLTVAGSDSGAGAGIQADLKTC+AR V+CSTVITAVTAQNT+GVQGVNIVP
Sbjct: 76  DSELNKIPHVLTVAGSDSGAGAGIQADLKTCSARRVYCSTVITAVTAQNTLGVQGVNIVP 135

Query: 73  EDFVAEQLKSVLSDMQVDVVKTGMLPSIGIVNILRQSLREFPVRG--------SFGG*SC 124
            DFV  QL SVLSD+ VDVVKTGMLPS+ ++ +L QSLR+FPV+         S  G   
Sbjct: 136 HDFVQHQLNSVLSDINVDVVKTGMLPSLSVLKVLCQSLRKFPVKALVVDPVMISTSG--- 192

Query: 125 HGIYKWRCASWSFHSFLFS-ADIITPNIKEASALLGGTPLKTVADMRSAAKLLHAIGPRN 183
             I         F   L   ADI+TPN+KEASALLG  P+KTV+DMR+AAKL+H +GPR+
Sbjct: 193 -DILAGPSVLDGFREELLPMADIVTPNVKEASALLGDLPIKTVSDMRTAAKLIHDLGPRS 251

Query: 184 VLVKGGDLPDSLDAVDIFFDGKNYHELRASRIKTRNTHGTGCTLASCIAAELAKGSPMLS 243
           VLVKGGDLP+S +A+DIF+DG+ ++EL + R+ TRNTHGTGCT+ASCIAAELAKGS MLS
Sbjct: 252 VLVKGGDLPNSSEAIDIFYDGQEFYELSSPRVNTRNTHGTGCTMASCIAAELAKGSSMLS 311

Query: 244 AVKIAKRYVETALEYSKD 261
           AVKIAKR+VE ALEYS+D
Sbjct: 312 AVKIAKRFVEAALEYSRD 329