Jatropha Genome Database
- JcCA0061381.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0061381.20 + phase: 2 /TE
(456 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 103 2e-22
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 103 2e-22
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 90 3e-18
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 82 4e-16
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 82 5e-16
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 79 4e-15
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 78 1e-14
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 75 6e-14
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 75 1e-13
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 74 2e-13
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 72 8e-13
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 71 1e-12
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 71 1e-12
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 69 3e-12
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 69 5e-12
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 69 5e-12
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 68 1e-11
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 62 6e-10
IMGA|Medtr1g076760.1 hypothetical protein chr01_pseudomolecule_I... 61 9e-10
IMGA|Medtr3g044280.1 hypothetical retrotransposon, related chr03... 60 2e-09
IMGA|Medtr5g082230.1 hypothetical retrotransposon, related chr05... 60 2e-09
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 59 4e-09
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 57 2e-08
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 52 5e-07
IMGA|Medtr7g116810.1 hypothetical protein chr07_pseudomolecule_I... 51 1e-06
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 66 CPDCMAGKQNRVALKIIPPSRMKNVLDLIHLDLCGPL-TMSYVGNRYFVIFIDDHSRKTX 124
C C + ++ K+ ++ + +LIH D+ GP+ T S G++YF+ +DD+SR T
Sbjct: 565 CDICHYSRHKKLPFKL-SMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTW 623
Query: 125 VX-------------------------PLKCIRTDNGGEYTGPIDAFYKEHGIRHQTTHP 159
+ +K +RTDNG E+ P FY GI HQT+
Sbjct: 624 IMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMP--DFYSSKGIEHQTSCV 681
Query: 160 KTLQLNSLAERMNRTLMERVRCLLSHAKLSKGF------RXXXXXXXXPCVPLQYDIPER 213
+T Q N ER ++ ++ R LL +KL K F P LQ P
Sbjct: 682 ETPQQNGRVERKHQHILNVARALLFQSKLPKIFWSYSVLHAIYIINRIPTPLLQNKSPYF 741
Query: 214 VWSGKDVSYDHLRVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQFGYKFYDPIQKTI 273
+ G D ++ +VFGC + + R+K D + ++CVF+GY Q G YD KTI
Sbjct: 742 LRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTI 801
Query: 274 IRSSDVVFVE 283
S +V + E
Sbjct: 802 FASRNVTYHE 811
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/250 (29%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 66 CPDCMAGKQNRVALKIIPPSRMKNVLDLIHLDLCGPL-TMSYVGNRYFVIFIDDHSRKTX 124
C C + ++ K+ ++ + +LIH D+ GP+ T S G++YF+ +DD+SR T
Sbjct: 495 CDICHYSRHKKLPFKL-SMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTW 553
Query: 125 VX-------------------------PLKCIRTDNGGEYTGPIDAFYKEHGIRHQTTHP 159
+ +K +RTDNG E+ P FY GI HQT+
Sbjct: 554 IMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFLMP--DFYSSKGIEHQTSCV 611
Query: 160 KTLQLNSLAERMNRTLMERVRCLLSHAKLSKGF------RXXXXXXXXPCVPLQYDIPER 213
+T Q N ER ++ ++ R LL +KL K F P LQ P
Sbjct: 612 ETPQQNGRVERKHQHILNVARALLFQSKLPKVFWSYSVLHAIYIINRIPTPLLQNKSPYF 671
Query: 214 VWSGKDVSYDHLRVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQFGYKFYDPIQKTI 273
+ G D ++ +VFGC + + R+K D + ++CVF+GY Q G YD KTI
Sbjct: 672 LRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTI 731
Query: 274 IRSSDVVFVE 283
S +V + E
Sbjct: 732 FASRNVTYHE 741
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 99/231 (42%), Gaps = 34/231 (14%)
Query: 85 SRMKNVLDLIHLDLCGPLTMSYV-GNRYFVIFIDDHSRKTXVXPLKC------------- 130
S + L+H D+ GPL ++YV G++YF+ +DDH+R + LK
Sbjct: 560 SHANSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIA 619
Query: 131 ------------IRTDNGGEYTGPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMER 178
IRTDNG E+ + FY GI HQ + +T Q N ER ++ ++
Sbjct: 620 LIENQFHITPKIIRTDNGSEFL--LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNI 677
Query: 179 VRCLLSHAKLSKGF------RXXXXXXXXPCVPLQYDIPERVWSGKDVSYDHLRVFGCKV 232
R LL +KL F P + LQ P ++ +VFGC
Sbjct: 678 GRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLC 737
Query: 233 FVHVPKDERSKLDVKTRQCVFIGYGQDQFGYKFYDPIQKTIIRSSDVVFVE 283
+ + R+KL+ + R+ VF+GY G YD + I S VVF E
Sbjct: 738 YASSLQSHRTKLETRARKSVFLGYKSGFKGSVLYDLHTREIFISRHVVFHE 788
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 103/244 (42%), Gaps = 35/244 (14%)
Query: 91 LDLIHLDLCGPLTMSYV-GNRYFVIFIDDHSRKTXVXPLK-------------------- 129
L+H D+ GPL ++ + G++YF+ +DDH+R + LK
Sbjct: 40 FQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFLWIILLKTKAEVPMHIKNFIVMIENQF 99
Query: 130 -----CIRTDNGGEYTGPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCLLS 184
IRTDNG E+ + FY GI HQ++ +T Q N ER ++ ++ R LL
Sbjct: 100 HVTPKIIRTDNGSEFL--LHEFYASKGILHQSSCVETPQQNGRVERKHQHILNIGRALLY 157
Query: 185 HAKL-----SKGFRXXXXXXXXPCVPLQYDI-PERVWSGKDVSYDHLRVFGCKVFVHVPK 238
+KL S F P+ ++ P + +VFGC + +
Sbjct: 158 QSKLPLSFWSYAFLHAVFLINRITTPVLHNFSPYHLLYDSPPDITTFKVFGCLCYASSLQ 217
Query: 239 DERSKLDVKTRQCVFIGYGQDQFGYKFYDPIQKTIIRSSDVVFVE-DQTIKDIEKTQKLS 297
+KL+ + R+ VF+GY GY YD + I S VVF E K I +Q L
Sbjct: 218 SHITKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPYKSISSSQSLD 277
Query: 298 TNRF 301
F
Sbjct: 278 WEYF 281
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 34/209 (16%)
Query: 85 SRMKNVLDLIHLDLCGPLTMSYV-GNRYFVIFIDDHSRKTXVXPLK-------------- 129
S + L+H D+ GPL ++YV G++YF+ +DDH+R + LK
Sbjct: 560 SHANSKFQLLHFDIWGPLAINYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIA 619
Query: 130 -----------CIRTDNGGEYTGPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMER 178
IRTDNG E+ + FY GI HQ + +T Q N ER ++ ++
Sbjct: 620 LIENQFHITPKIIRTDNGSEFL--LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNI 677
Query: 179 VRCLLSHAKLSKGF------RXXXXXXXXPCVPLQYDIPERVWSGKDVSYDHLRVFGCKV 232
R LL +KL F P + LQ P ++ +VFGC
Sbjct: 678 GRALLYQSKLPLSFWSYAFLHAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLC 737
Query: 233 FVHVPKDERSKLDVKTRQCVFIGYGQDQF 261
+ + R+KL+ + R+ VF+GY F
Sbjct: 738 YASSLQSHRTKLETRARKSVFLGYKNFYF 766
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 111/260 (42%), Gaps = 42/260 (16%)
Query: 53 NILPELDKVHLDKCPDCMAGKQNRVALKIIPPSRMKNVLDLIHLDLCGPLTMSYV-GNRY 111
++ P + + D C C KQ + S +L+H D+ GP+++S V G+RY
Sbjct: 512 HLYPSIVHNNRDVCDICHFSKQKHLPFSS-SLSHASTNFELLHFDIWGPISISSVHGHRY 570
Query: 112 FVIFIDDHSRKTXVXPLKC-------------------------IRTDNGGEYTGPIDAF 146
F+ +DDHSR + LK +R+DNG E+ ++ F
Sbjct: 571 FLTILDDHSRFLWIILLKSKSEVSLHVKNFILMIRTQFHVTPKYVRSDNGPEFL--LNDF 628
Query: 147 YKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCLLSHAKLSKGFRXXXXXXXXPCVPL 206
Y HGI HQ + +T Q N ER ++ ++ R LL +KL F V L
Sbjct: 629 YSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPSFWSYAILH---AVFL 685
Query: 207 QYDIPERVWSGKDVSYDHLRVFGCKVFVHVPKDE--RSKLDVKTRQCVFIGYGQDQFGYK 264
+P V + + +F +P + +SKL + R+ +F+GY GY
Sbjct: 686 INRVPTHVLHNQSPYH--------VLFHKLPDIQLFKSKLQPRARKSLFLGYKSGYKGYH 737
Query: 265 FYDPIQKTIIRSSDVVFVED 284
+D + I S V+F E+
Sbjct: 738 LFDLSTREIFVSRHVIFHEN 757
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 116/282 (41%), Gaps = 44/282 (15%)
Query: 29 RNGQWKLTKCSFVVAKGMTTLVRKNILPELDKVHLDKCPDCMAGKQNRVALKIIPPSRMK 88
++G +KL S M++L + + V C C KQ + I
Sbjct: 465 QDGLYKLGHLSHQRMNMMSSLYSNIVSDNKNSV----CDICHFAKQKHLPFSISTSHATS 520
Query: 89 NVLDLIHLDLCGPLTMSYV-GNRYFVIFIDDHSRKTXVXPL------------------- 128
N +L+HLD+ GPL++S + G++YF+ +DDHSR + L
Sbjct: 521 N-FELLHLDIWGPLSISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQT 579
Query: 129 ------KCIRTDNGGEYTGPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCL 182
KCIR+DNG E+ I +FY+ GI HQ + +T Q N ER + ++ R L
Sbjct: 580 QFHVTPKCIRSDNGPEFL--ILSFYESLGILHQKSCVETPQQNGRVERKHHHILNVGRAL 637
Query: 183 LSHAKLSKGFRXXXXXXXXPCVPLQYDIPERVWSGKDVSYD-HLRVFGCKVFVHVPKDER 241
L +KL + V L P + G+ Y H + F +
Sbjct: 638 LYQSKLPASYWSYALLH---AVFLINRKPTPLLEGQSPYYALHHKFPDIDTF-------K 687
Query: 242 SKLDVKTRQCVFIGYGQDQFGYKFYDPIQKTIIRSSDVVFVE 283
++ + R+ VF+GY G+ D + I S VVF E
Sbjct: 688 NQASTRARKTVFLGYKSGYKGFILLDIHSREIFVSRHVVFHE 729
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 91/210 (43%), Gaps = 40/210 (19%)
Query: 82 IPPSRMKNVLDLIHLDLCGPLTMSYV-GNRYFVIFIDDHSRKTXVXPL------------ 128
I K DL+H D+ GP + + V G++YF+ +DD +R + L
Sbjct: 582 ISSRNAKTAFDLVHFDIWGPFSTTSVHGHKYFLTILDDCTRHVWIVMLKNKSEASYQVKN 641
Query: 129 -------------KCIRTDNGGEYTGPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTL 175
K IR+DNG E+ + FY + GI HQ + T Q N ER ++ +
Sbjct: 642 FVSMVERQFERKIKMIRSDNGPEFM--LREFYDKKGIIHQRSCVYTPQQNGRVERRHQHI 699
Query: 176 MERVRCLLSHAKLSKGFRXXXXXXXXPCVPLQYDIPERVWSGK---DVSYDH------LR 226
+ R L+ +KL K F V L IP ++ + K +V Y+ L+
Sbjct: 700 LNISRALMFQSKLPKNFWSYAVLH---AVYLINRIPTKILNNKSSYEVLYNEVPDLSSLK 756
Query: 227 VFGCKVFVHVPKDERSKLDVKTRQCVFIGY 256
VFGC + R K D K R+C F+G+
Sbjct: 757 VFGCLSYASTLPVNRYKFDPKARKCAFLGF 786
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 74/161 (45%), Gaps = 8/161 (4%)
Query: 129 KCIRTDNGGEYTGPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCLLSHAKL 188
K IR DNG E+ + FY HGI H + +T Q N ER ++ ++ VR LL +KL
Sbjct: 459 KTIRIDNGPEFM--LKDFYASHGIIHHKSCVETPQQNGRVERKHQHILNVVRALLFQSKL 516
Query: 189 SKGFRXXXXXXXXPCV-----PLQYD-IPERVWSGKDVSYDHLRVFGCKVFVHVPKDERS 242
F + PL ++ P V K S D +VFGC + ++ R+
Sbjct: 517 PPTFWSYAVLHAVFLINRVSTPLLHNQSPYLVLHNKLPSLDLFKVFGCLCYASTLQNHRT 576
Query: 243 KLDVKTRQCVFIGYGQDQFGYKFYDPIQKTIIRSSDVVFVE 283
KL + R+ +F+GY GY +D + I S V F E
Sbjct: 577 KLQSRARKSIFLGYQSGYKGYVLFDLTSREIFISRHVSFHE 617
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H
fold chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 88/197 (44%), Gaps = 16/197 (8%)
Query: 129 KCIRTDNGGEYTGPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCLLSHAKL 188
K IRTDNG E+ + FY GI HQ + +T Q N ER ++ ++ R LL +KL
Sbjct: 11 KIIRTDNGSEFL--LHEFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKL 68
Query: 189 SKGFRXXXXXXXXPCVPLQYDIPERV---WSGKDVSYDH------LRVFGCKVFVHVPKD 239
F V L IP V +S + YD +VFGC + +
Sbjct: 69 PLSFWSYAFLH---AVFLINRIPTPVLHNFSPYHLLYDSPPDITTFKVFGCLCYASSLQS 125
Query: 240 ERSKLDVKTRQCVFIGYGQDQFGYKFYDPIQKTIIRSSDVVFVE-DQTIKDIEKTQKLST 298
R+KL+ + R+ VF+GY GY YD + I S VVF E K I +Q L
Sbjct: 126 HRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPYKSISSSQSLDW 185
Query: 299 NRFDEDSTDIQIVPPIE 315
F S+ + I+P +
Sbjct: 186 EYFTSISS-LLIIPSVS 201
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 35/263 (13%)
Query: 53 NILPELDKVHLDKCPDCMAGKQNRVALKIIPPSRMKNVLDLIHLDLCGPLTMSYVGN-RY 111
++ P L + C C KQ +++ S + +L+H D+ GPL ++ + N RY
Sbjct: 501 HLYPTLTVDNHATCDICQFAKQKKLSFPT-SVSVASSKFELLHFDIWGPLAVTSIHNHRY 559
Query: 112 FVIFIDDHSRKTXVXPLK-------------------------CIRTDNGGEYTGPIDAF 146
F+ +DD+S + LK +R+DNG E+ +++F
Sbjct: 560 FLTILDDYSIFFWIVLLKSKYEVSQHVKNFINLIHTQYHITPKVVRSDNGPEFL--LNSF 617
Query: 147 YKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCLLSHAKLSKGFRXXXXXXXXPCV-- 204
Y GI H + +T Q N ER ++ ++ R LL +KL + +
Sbjct: 618 YASKGIVHHKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPSSYWSYALLHAIFIINR 677
Query: 205 ----PLQYDIPERVWSGKDVSYDHLRVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQ 260
L P ++ G +VFG + + R+KL + R+ VF+GY
Sbjct: 678 VTSPTLHNKSPYQLLHGTIPDVQTFKVFGSLCYSTTLQSHRTKLSARARKTVFLGYAVGY 737
Query: 261 FGYKFYDPIQKTIIRSSDVVFVE 283
GY D + I S V F E
Sbjct: 738 KGYVLLDIHTREIHISRHVQFHE 760
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 34/157 (21%)
Query: 128 LKCIRTDNGGEY-TGPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCLLSHA 186
+K ++ DNG E+ + F K GI T Q NS+A+RMN+TL+ER RC+LS+A
Sbjct: 26 VKRLQIDNGLEFCWSEFNEFCKTEGISRHHMVRNTPQQNSVAKRMNQTLLERARCMLSNA 85
Query: 187 KLSKGFRXXXXXXXXPCVPLQYDIPERVWSGKDVSYDHLRVFGCKVFVHVPKDERSKLDV 246
L++ F W FGC V+ V + KL+
Sbjct: 86 GLTRTF----------------------WGETG--------FGCTVYYRVNE---GKLES 112
Query: 247 KTRQCVFIGYGQDQFGYKFYDPIQKTIIRSSDVVFVE 283
+ ++ VF+GYG Y+ + P + +I S +VVF E
Sbjct: 113 RAKKRVFVGYGDGVKEYRIWSPSENRVILSRNVVFDE 149
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/254 (27%), Positives = 99/254 (38%), Gaps = 63/254 (24%)
Query: 61 VHLDK---CPDCMAGKQNRVALKIIPPSRMKNVLDLIHLDLCGPLT-MSYVGNRYFVIFI 116
+H+D C C KQ ++ N +L++LD+ GPL +S G RYF+ +
Sbjct: 467 IHVDNKFICDICHFAKQRKLPYNSSTSIASSN-FELLYLDIWGPLAKVSIHGQRYFLTIV 525
Query: 117 DDHSR--------------------------KTXVXPLKCIRTDNGGEYTGPIDAFYKEH 150
DDHSR K V P K IR+DNG + + AFY
Sbjct: 526 DDHSRFLWTILFKNKSEVPSHIQHFIYLIQNKHKVTP-KIIRSDNGHVFL--LSAFYASQ 582
Query: 151 GIRHQTTHPKTLQLNSLAERMNRTLMERVRCLLSHAKLSKGFRXXXXXXXXPCVPLQYDI 210
GI HQ + +T Q N L+ RV P + L+
Sbjct: 583 GIIHQRSCVETPQHNVF-------LINRV----------------------PTLVLENKS 613
Query: 211 PERVWSGKDVSYDHLRVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQFGYKFYDPIQ 270
P +V + +VFGC + + R+KL + R+ VF+GY G YD
Sbjct: 614 PYQVLYKTLPDINSFKVFGCLCYASTLQSHRTKLQSRARKSVFLGYKSGYKGSFLYDLNT 673
Query: 271 KTIIRSSDVVFVED 284
K I S +V F E
Sbjct: 674 KEIFMSRNVTFHES 687
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 87/199 (43%), Gaps = 40/199 (20%)
Query: 91 LDLIHLDLCGPLTMSYV-GNRYFVIFIDDHSRKTXVXPLK-------------------- 129
+L+H D+ GPL+++ V G++YF+ +DD SR V LK
Sbjct: 577 FELLHFDIWGPLSVTSVHGHKYFLTIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHTHY 636
Query: 130 -----CIRTDNGGEYTGPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCLLS 184
IR+DNG E+ P FY GI HQ + +T Q N ER ++ ++ R LL
Sbjct: 637 QITPKYIRSDNGPEFLIP--EFYASKGIIHQKSCVETPQQNGRVERKHQHILNVARALLF 694
Query: 185 HAKLSKGFRXXXXXXXXPCVPLQYDIPERVWSGKD---VSYDHL------RVFGCKVFVH 235
+KL F V L +P ++ K + YD L +VFGC F
Sbjct: 695 QSKLPNFFWSYAVIH---AVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFAS 751
Query: 236 VPKDERSKLDVKTRQCVFI 254
+RSKL + R+ +F
Sbjct: 752 TLLAQRSKLQSRARKSIFF 770
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H
fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 74/179 (41%), Gaps = 12/179 (6%)
Query: 112 FVIFIDDHSRKTXVXPLKCIRTDNGGEYTGPIDAFYKEHGIRHQTTHPKTLQLNSLAERM 171
F+ I +H T K IRTDNG E+ + Y HGI HQ + +T Q N ER
Sbjct: 606 FITMIKNHFHTT----PKFIRTDNGPEFM--LSTLYSSHGIIHQKSCVETPQQNGRVERK 659
Query: 172 NRTLMERVRCLLSHAKLSKGF------RXXXXXXXXPCVPLQYDIPERVWSGKDVSYDHL 225
++ ++ R LL +KL + P L P V K
Sbjct: 660 HQHILNVGRALLYQSKLPPAYWCYAIQHAVFLINRVPTPTLNNQSPYFVLHHKLPDSSLF 719
Query: 226 RVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQFGYKFYDPIQKTIIRSSDVVFVED 284
+VFGC + + +KL + R+ +FIGY G+ YD + I S V F E+
Sbjct: 720 KVFGCLCYASTLQSHTTKLKHRARKSIFIGYQSGYKGFTLYDLHSREIFISRHVTFHEN 778
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 37/251 (14%)
Query: 66 CPDCMAGKQNRVAL-KIIPPSRMKNVLDLIHLDLCGPLTMSYVGN-RYFVIFIDDHSRKT 123
C C KQ ++ I + +K +L+H D+ GPL+++ + N RYF+ +DD+SR
Sbjct: 522 CDICHFAKQKKLPFSNSISVASIK--FELLHFDIWGPLSITSIHNHRYFLTILDDYSRYV 579
Query: 124 XVXPLKC-------------------------IRTDNGGEYTGPIDAFYKEHGIRHQTTH 158
+ LK +R+DNG E+ + +FY GI H +
Sbjct: 580 WIVLLKSKSEVSQHVKNFINLIQTQYNITPKTVRSDNGPEFL--LHSFYASKGIVHHRSC 637
Query: 159 PKTLQLNSLAERMNRTLMERVRCLLSHAKLSKGFRXXXXXXXXPCV------PLQYDIPE 212
+T Q N ER ++ ++ R LL +KL + + L P
Sbjct: 638 VETPQQNGRVERKHQHILNVGRALLYQSKLPVSYWSYALLHATFIINRVTSPTLHNKSPY 697
Query: 213 RVWSGKDVSYDHLRVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQFGYKFYDPIQKT 272
++ + +VFG + R+KL + R+ VF+GY GY D +
Sbjct: 698 QLLHDTIPAEHIFKVFGSLCYSTTLHSHRTKLSARARKSVFLGYTVGFKGYVLLDIHTRE 757
Query: 273 IIRSSDVVFVE 283
I S V F E
Sbjct: 758 IHISRHVQFYE 768
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 88/221 (39%), Gaps = 70/221 (31%)
Query: 90 VLDLIHLDLCGPL-TMSYVGNRYFVIFIDDHSRKTXVXPLKC------------------ 130
+ +L+H+D+ GP T ++ +YF+ +DD S+ T L C
Sbjct: 19 IFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSCKSNAFHVLKAFILMVENQ 78
Query: 131 -------IRTDNGGEYT-GPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCL 182
IR+DNG E+T F++ GI HQ + P T Q N + ER ++ ++E R L
Sbjct: 79 FSTTVKTIRSDNGLEFTSNETTLFFQSKGIIHQKSCPYTPQQNGVVERKHKFILETARAL 138
Query: 183 LSHAKLSKGFRXXXXXXXXPCVPLQYDIPERVWSGKDVSYDHLRVFGCKVFVHVPKDERS 242
L +KL P + WS + R+
Sbjct: 139 LFQSKL----------------------PVKYWS---------------------EFHRT 155
Query: 243 KLDVKTRQCVFIGYGQDQFGYKFYDPIQKTIIRSSDVVFVE 283
K D KT VF+GY GYK + + I S DV+F E
Sbjct: 156 KFDPKTIPHVFVGYPYATKGYKVLNLSTQKIHVSRDVIFHE 196
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 62.0 bits (149), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 28/136 (20%)
Query: 54 ILPELD-KVHLDKCPDCMAGKQNRVALKIIPPSRMKNVLDLIHLDLCGPLTM-SYVGNRY 111
++ EL+ K+ C C+ GK +R A K R K+VL+++H D+ GP+ + +Y GNRY
Sbjct: 2 VIGELNVKIVEKSCNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRY 61
Query: 112 FVIFIDDHS------------------RKTXVXP-------LKCIRTDNGGEYTGP-IDA 145
F+ F+D++S +K V P LK + T GGEYT ++
Sbjct: 62 FITFVDEYSKMLWLYLIKLKSDALEVFKKFKVLPEKQSGMKLKILITYGGGEYTSKDFES 121
Query: 146 FYKEHGIRHQTTHPKT 161
+ GI H+ T P T
Sbjct: 122 YCTNQGIIHEVTTPYT 137
>IMGA|Medtr1g076760.1 hypothetical protein
chr01_pseudomolecule_IMGAG_V3 15437706-15436255 H
EGN_Mt090430 20090702
Length = 186
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 12/73 (16%)
Query: 202 PCVPLQYDIPERVWSGKDVSYDHLRVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQF 261
P V LQY++ +++W K++SYDHL VFGCK + VK++ C+F+ Y D
Sbjct: 124 PSVSLQYEVRDKIWLRKNISYDHLCVFGCKTY------------VKSQHCMFLCYDLDGA 171
Query: 262 GYKFYDPIQKTII 274
Y+FYD K +I
Sbjct: 172 DYRFYDCDMKKLI 184
>IMGA|Medtr3g044280.1 hypothetical retrotransposon, related
chr03_pseudomolecule_IMGAG_V3 12337068-12337358 H
EGN_Mt090430 20090702
Length = 96
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 26 STFRNGQWKLTKCSFVVAKGMTTLVRKNILPELDKVHLDKCPDCMAGKQNRVALKIIPPS 85
ST + W C ++ K M L + N+L ++ HL KC C+ K+++V+ + P
Sbjct: 4 STEKVELWHKRLCH-MIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPK 62
Query: 86 RMKNVLDLIHLDLCGPLTMSYV-GNRYFVIFIDDH 119
R +LDL+H L GP+ + G+ YF+ FIDDH
Sbjct: 63 R-PTILDLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr5g082230.1 hypothetical retrotransposon, related
chr05_pseudomolecule_IMGAG_V3 30910887-30910597 H
EGN_Mt090430 20090702
Length = 96
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 26 STFRNGQWKLTKCSFVVAKGMTTLVRKNILPELDKVHLDKCPDCMAGKQNRVALKIIPPS 85
ST + W C ++ K M L + N+L ++ HL KC C+ K+++V+ + P
Sbjct: 4 STEKVELWHKRLCH-MIEKDMVKLCKSNVLSDMSNPHLKKCDHCIVEKKSKVSFEFHSPK 62
Query: 86 RMKNVLDLIHLDLCGPLTMSYV-GNRYFVIFIDDH 119
R +LDL+H L GP+ + G+ YF+ FIDDH
Sbjct: 63 R-PTILDLVHCHLFGPMKTGTIGGSTYFLSFIDDH 96
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 59.3 bits (142), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 161 TLQLNSLAERMNRTLMERVRCLLSHAKLSKGFRXXXXXXX------XPCVPLQYDIPERV 214
T Q N +AERMN+TL+E+ R +LS+ L++ F P + +
Sbjct: 5 TPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTLYEL 64
Query: 215 WSGKDVSYDHLRVFGCKVFVHVP--KDERSK 243
W GK V Y +LRVFGC V+ HV K ER K
Sbjct: 65 WPGKSVDYSNLRVFGCTVYYHVNEWKLERRK 95
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 58/121 (47%), Gaps = 28/121 (23%)
Query: 98 LCGPLTMSYV-GNRYFVIFIDDHSRKTXVXPLKC-------------------------I 131
+ GPL+++ V G+RYF+ +DDH+R V LK I
Sbjct: 521 IWGPLSVASVHGHRYFLTILDDHTRFLWVILLKTKAEVSSHVKNFITMIQNHFHTTPKFI 580
Query: 132 RTDNGGEYTGPIDAFYKEHGIRHQTTHPKTLQLNSLAERMNRTLMERVRCLLSHAKLSKG 191
RTDNG E+ P +FY HGI HQ + +T Q N ER ++ ++ R LL +KL
Sbjct: 581 RTDNGPEFMLP--SFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPS 638
Query: 192 F 192
F
Sbjct: 639 F 639
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 202 PCVPLQYDIPERVWSGKDVSYDHLRVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQF 261
P ++ +PE +WS + S +L+VFG + HVP R KL+ KT + +GY +
Sbjct: 31 PTKKMKDKVPEEIWSRRKPSISNLKVFGSIFYKHVPDSRRKKLEDKTEAMILVGY-HNTG 89
Query: 262 GYKFYDPIQKTIIRSSDVVFVEDQ 285
Y+ D K I + DV +E++
Sbjct: 90 AYRLLDLHSKKISITRDVKVLEEE 113
>IMGA|Medtr7g116810.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 27118605-27118065 H
EGN_Mt090430 20090702
Length = 141
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 226 RVFGCKVFVHVPKDERSKLDVKTRQCVFIGYGQDQFGYKFYDP 268
++FGC FV++ D RSKLD + +CVFIGY Q GY Y P
Sbjct: 10 KIFGCTSFVYIQSDGRSKLDPRALKCVFIGYSSTQKGYICYHP 52