Jatropha Genome Database

JcCA0060621.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0060621.10 + phase: 2 /partial
         (161 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g065760.1 Cis-homoaconitase; ; ; chr01_pseudomolecule...   270   2e-73
IMGA|Medtr1g087350.1 Aconitate hydratase, N-terminal; ; chr01_ps...   210   3e-55

>IMGA|Medtr1g065760.1 Cis-homoaconitase; ; ;
           chr01_pseudomolecule_IMGAG_V3 13193763-13202569 E
           EGN_Mt090430 20090702
          Length = 508

 Score =  270 bits (691), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 127/130 (97%), Positives = 130/130 (100%)

Query: 1   FLSEYRFDISKLEPLVAKPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFL 60
           FLSEYRFD+SKLEPLVAKPHSPDNRALARECKDVKI+RVYIGSCTGGKTEDFMAAAKVFL
Sbjct: 329 FLSEYRFDVSKLEPLVAKPHSPDNRALARECKDVKINRVYIGSCTGGKTEDFMAAAKVFL 388

Query: 61  ASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGRTCSQIFEEAGCDTPASPSCGACLGGP 120
           ASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGG+TCSQIFEEAGCDTPASPSCGACLGGP
Sbjct: 389 ASGKKVKVPTFLVPATQKVWMDVYSLPVPGSGGKTCSQIFEEAGCDTPASPSCGACLGGP 448

Query: 121 KDTYARMNEP 130
           KDTYARMNEP
Sbjct: 449 KDTYARMNEP 458


>IMGA|Medtr1g087350.1 Aconitate hydratase, N-terminal; ;
           chr01_pseudomolecule_IMGAG_V3 17586332-17579961 H
           EGN_Mt090430 20090702
          Length = 466

 Score =  210 bits (534), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 96/115 (83%), Positives = 106/115 (92%)

Query: 18  KPHSPDNRALARECKDVKIDRVYIGSCTGGKTEDFMAAAKVFLASGKKVKVPTFLVPATQ 77
           +PHSPDNRALAREC +VKIDRVYIGSCTGGKT DFMAAAKV LA+GK VKVPTFLVPATQ
Sbjct: 307 QPHSPDNRALARECNNVKIDRVYIGSCTGGKTGDFMAAAKVSLAAGKTVKVPTFLVPATQ 366

Query: 78  KVWMDVYSLPVPGSGGRTCSQIFEEAGCDTPASPSCGACLGGPKDTYARMNEPMV 132
           KVWMD+Y+L VPGSGG+TCS+IFE+AGCD PASPSC AC+GGPKDTY R+NEP V
Sbjct: 367 KVWMDIYTLEVPGSGGKTCSKIFEDAGCDPPASPSCAACMGGPKDTYGRINEPKV 421