Jatropha Genome Database

JcCA0059711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0059711.10 - phase: 0 
         (66 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g017600.1 Cyclin-dependent kinase inhibitor chr05_pse...    49   5e-07

>IMGA|Medtr5g017600.1 Cyclin-dependent kinase inhibitor
           chr05_pseudomolecule_IMGAG_V3 6306558-6305110 E
           EGN_Mt090430 20090702
          Length = 183

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 18/22 (81%), Positives = 21/22 (95%)

Query: 45  YNYDVAKDVPLEGRYQWVRLKP 66
           YNYD+ KDVPLEGRY+WV+LKP
Sbjct: 162 YNYDIVKDVPLEGRYEWVQLKP 183