Jatropha Genome Database

JcCA0055861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0055861.10 + phase: 1 /pseudo/partial
         (261 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr2g008560.1 Aminotransferase, class I and II; ; chr02_p...   301   3e-82
IMGA|Medtr4g122020.1 Aminotransferase, class I and II; ; chr04_p...   286   5e-78
IMGA|Medtr4g140320.1 Aminotransferase, class I and II; ; chr04_p...    65   4e-11
IMGA|Medtr3g097750.1 Aminotransferase, class I and II; chr03_pse...    55   4e-08
IMGA|Medtr3g097770.1 Aminotransferase, class I and II; chr03_pse...    54   6e-08
IMGA|Medtr1g107550.1 Aminotransferase, class I and II; chr01_pse...    50   1e-06

>IMGA|Medtr2g008560.1 Aminotransferase, class I and II; ;
           chr02_pseudomolecule_IMGAG_V3 1650708-1654241 E
           EGN_Mt090430 20090702
          Length = 440

 Score =  301 bits (770), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 153/220 (69%), Positives = 182/220 (82%), Gaps = 4/220 (1%)

Query: 38  LNYPKRTDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYALYGSNDSSXSI 97
           L+   R  LIFFCSPNNPTGHAATR+QL+ LV FAK NGSIII+DSAY+ Y ++ S  SI
Sbjct: 207 LHTTSRAQLIFFCSPNNPTGHAATRKQLQQLVDFAKVNGSIIIYDSAYSAYITDGSPKSI 266

Query: 98  FEIPGAKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFS----VINDFNRVVCTCFNGAS 153
           +EIPGA+EVAIE+SSFSKFAGFTGVRLGWT +P EL +S    V++DFNR+VCTCFNGAS
Sbjct: 267 YEIPGAREVAIEVSSFSKFAGFTGVRLGWTVVPEELLYSNGFPVLHDFNRIVCTCFNGAS 326

Query: 154 NIAQAGGLACLSSEGFMAVHSMVKYYMENAKLLLDTLAFIGPKAYGGENAPYVWVHFPGS 213
           NI+QAGGLACLS EG  AV S+V YYMENA++L+  L  +G   YGG+NAPYVWV FPGS
Sbjct: 327 NISQAGGLACLSPEGLNAVQSLVDYYMENARILVTALTSLGLTVYGGKNAPYVWVRFPGS 386

Query: 214 KSWDLFDEILDKTNIITVPGSGFGPRGEEFLRISAFGHRN 253
           KSWD+F EIL+ T+IIT+PGSGFGP GE ++RISAFG R+
Sbjct: 387 KSWDVFAEILENTHIITIPGSGFGPGGEGYIRISAFGQRD 426


>IMGA|Medtr4g122020.1 Aminotransferase, class I and II; ;
           chr04_pseudomolecule_IMGAG_V3 28801431-28796116 E
           EGN_Mt090430 20090702
          Length = 459

 Score =  286 bits (733), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 147/214 (68%), Positives = 176/214 (82%), Gaps = 4/214 (1%)

Query: 43  RTDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYALYGSNDSSXSIFEIPG 102
           R D+IFFCSPNNPTG AATR+QL  LV+FAK+NGSII++DSAYA+Y S D+  SIFEIPG
Sbjct: 231 RPDIIFFCSPNNPTGAAATREQLVQLVQFAKDNGSIIVYDSAYAMYISGDNPRSIFEIPG 290

Query: 103 AKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFS----VINDFNRVVCTCFNGASNIAQA 158
           AKEVAIE SSFSK+AGFTGVRLGWT IP +L FS    V  DFNR+VCTCFNGASNI+QA
Sbjct: 291 AKEVAIETSSFSKYAGFTGVRLGWTVIPKQLLFSDGFPVAKDFNRIVCTCFNGASNISQA 350

Query: 159 GGLACLSSEGFMAVHSMVKYYMENAKLLLDTLAFIGPKAYGGENAPYVWVHFPGSKSWDL 218
           GGLACLS EG  A+  ++ +Y EN  +++DT   +G K YGG++APYVWVHFPG  SWD+
Sbjct: 351 GGLACLSPEGLKAMRGVIGFYKENTNIIVDTFDSLGFKVYGGKSAPYVWVHFPGQNSWDV 410

Query: 219 FDEILDKTNIITVPGSGFGPRGEEFLRISAFGHR 252
           F EIL+KT+++T PGSGFGP GE F+R+SAFGHR
Sbjct: 411 FSEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHR 444


>IMGA|Medtr4g140320.1 Aminotransferase, class I and II; ;
           chr04_pseudomolecule_IMGAG_V3 34365416-34369440 E
           EGN_Mt090430 20090702
          Length = 475

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 101/224 (45%), Gaps = 25/224 (11%)

Query: 42  KRTDLIFFCSPNNPTGHAATRQQLEDLVKF-AKENGSIIIFDSAYA--LYGSNDSSXSIF 98
           +++ L+  CSP+NPTG    +  LE++ K  AK    ++I D  Y   +Y     + S  
Sbjct: 231 EKSRLLILCSPSNPTGSVYPKYLLEEIAKIVAKHPRLLVISDEIYEHIIYAPATHT-SFA 289

Query: 99  EIPGAKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFSVINDFNRVVCTCFNGASNIAQA 158
            +P      + ++ FSK    TG RLG+   P     +V     ++     +G S+I+Q 
Sbjct: 290 SLPRMWNRTLTVNGFSKAFAMTGWRLGYIAGPKHFIAAV----GKIQSQFTSGPSSISQK 345

Query: 159 GGLACLSS--EGFMAVHSMVKYYMENAKLLLDTLAFI-GPKAYGGENAPYVWVHFPG--- 212
            G+A L     G  AV +MVK + E    L+ + + I G K    + A Y+++ F     
Sbjct: 346 AGVAALGLGYAGGEAVSTMVKAFRERRDYLVKSFSEIDGVKISEPQGAFYLFIDFSSYYG 405

Query: 213 ---------SKSWDLFDEILDKTNIITVPGSGFGPRGEEFLRIS 247
                      S  L   +LDK  +  VPGS FG   +  +RIS
Sbjct: 406 KEAEGFGKIENSESLCRYLLDKGQVALVPGSAFG--DDTCIRIS 447


>IMGA|Medtr3g097750.1 Aminotransferase, class I and II;
           chr03_pseudomolecule_IMGAG_V3 23509032-23506389 E
           EGN_Mt090430 20090702
          Length = 396

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 8/223 (3%)

Query: 42  KRTDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYALYGSNDSSXSIFEIP 101
           K T  I   +P+NPTG   T ++L  +     EN  ++  D  Y     +    SI  +P
Sbjct: 169 KNTRAILLNTPHNPTGKMFTPEELNTIASLCIENDVLVFSDEVYDKLAFDMEHISIASLP 228

Query: 102 GAKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFSVINDFNRVVCTCFNGASNIAQAGGL 161
           G  E  + ++S  K    TG ++GW   P  L + V           F  ++ +  A  +
Sbjct: 229 GMFERTVTMNSLGKTFSLTGWKIGWAIAPPHLTWGVRQAH---AFLTFATSNPMQWAAAV 285

Query: 162 ACLSSEGFMAVHSMVKYYMENAKLLLDTLAFIGPKAYGGENAPYVWV-HFPGSKSWDL-F 219
           A  + + +     + + YM    +L++ L  +G K +      +V V H P     D+ F
Sbjct: 286 ALRAPDSYYT--ELKRDYMAKRSILVEGLKAVGFKVFPSSGTYFVVVDHTPFGHENDIAF 343

Query: 220 DEILDK-TNIITVPGSGFGPRGEEFLRISAFGHRNYPGSFKEA 261
            E L K   ++ +P S F    EE   +  F      G+ + A
Sbjct: 344 CEYLVKEVGVVAIPTSVFYLNPEEGKNLVRFTFCKDEGTLRAA 386


>IMGA|Medtr3g097770.1 Aminotransferase, class I and II;
           chr03_pseudomolecule_IMGAG_V3 23512972-23509957 F
           EGN_Mt090430 20090702
          Length = 402

 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 5/157 (3%)

Query: 42  KRTDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYALYGSNDSSXSIFEIP 101
           K T  I   +P+NPTG   TR++L+ +     EN  ++  D  Y     +    SI  +P
Sbjct: 175 KNTRAILINTPHNPTGKMFTREELDSVASLCIENDVLVFTDEVYHKLAFDMEHISIATLP 234

Query: 102 GAKEVAIEISSFSKFAGFTGVRLGWTNIPXELYFSVINDFNRVVCTCFNGASNIAQAGGL 161
           G  E  + ++S  K    TG ++GW   P  L + V      +  +     S+  Q G  
Sbjct: 235 GMFERTVTMNSLGKSFSLTGWKVGWAIAPPHLMWGVRQAHTYIAFSI----SHPLQCGAA 290

Query: 162 ACLSSEGFMAVHSMVKYYMENAKLLLDTLAFIGPKAY 198
           A L +     V  + + Y+    +L++ L  +G K +
Sbjct: 291 AALRAPDSYYVE-LKRDYIAKRAILVEGLKAVGFKVF 326


>IMGA|Medtr1g107550.1 Aminotransferase, class I and II;
           chr01_pseudomolecule_IMGAG_V3 22733112-22729572 E
           EGN_Mt090430 20090702
          Length = 403

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 42  KRTDLIFFCSPNNPTGHAATRQQLEDLVKFAKENGSIIIFDSAYA-LYGSNDSSXSIFEI 100
           +RT  I   SP+NPTG   T+ +LE +         + I D  Y  +   N    S+   
Sbjct: 156 ERTKAIILNSPHNPTGKVFTKDELETIAGACCSRNCLAITDEVYEHITYDNQKHISLASF 215

Query: 101 PGAKEVAIEISSFSKFAGFTGVRLGW 126
           PG +E  I  SS SK    TG R+GW
Sbjct: 216 PGMQERTIITSSLSKTFSVTGWRIGW 241