Jatropha Genome Database

JcCA0051561.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0051561.10 - phase: 0 /partial
         (113 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g088980.1 Protein of unknown function DUF250 chr05_ps...   143   3e-35
IMGA|Medtr3g092950.1 Protein of unknown function DUF250 chr03_ps...   140   2e-34
IMGA|Medtr4g015300.1 Protein of unknown function DUF250 chr04_ps...   114   1e-26
IMGA|Medtr8g106450.1 Protein of unknown function DUF250 chr08_ps...   108   7e-25

>IMGA|Medtr5g088980.1 Protein of unknown function DUF250
           chr05_pseudomolecule_IMGAG_V3 34538962-34542919 E
           EGN_Mt090430 20090702
          Length = 306

 Score =  143 bits (360), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 81/101 (80%)

Query: 1   MCIGATAARALKSVLQGILLSNEGEKLHSMNLLMFMXXXXXXXXXXXXXXMERDVVGITI 60
           +C+ ATAARALK+VLQGILLS+EGEKL+SMNLL++M              ME +VVGIT+
Sbjct: 159 ICVAATAARALKTVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLYMEENVVGITL 218

Query: 61  ALARDDMRFIVYLTFNSALAYFVNLANFLVTKHTSALTLQV 101
           ALARDDM+ I YL FNSALAYFVNL NFLVTKHTSALTLQV
Sbjct: 219 ALARDDMKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQV 259


>IMGA|Medtr3g092950.1 Protein of unknown function DUF250
           chr03_pseudomolecule_IMGAG_V3 21993323-21997060 E
           EGN_Mt090430 20090702
          Length = 308

 Score =  140 bits (353), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 79/101 (78%)

Query: 1   MCIGATAARALKSVLQGILLSNEGEKLHSMNLLMFMXXXXXXXXXXXXXXMERDVVGITI 60
           +C+ ATAARALKSVLQGILLS+EGEKL+SMNLL++M              ME +VVGIT 
Sbjct: 160 VCVAATAARALKSVLQGILLSSEGEKLNSMNLLLYMAPMAVVFLLPATLIMEENVVGITF 219

Query: 61  ALARDDMRFIVYLTFNSALAYFVNLANFLVTKHTSALTLQV 101
           ALARDD + I YL FNSALAYFVNL NFLVTKHTSALTLQV
Sbjct: 220 ALARDDTKIIWYLLFNSALAYFVNLTNFLVTKHTSALTLQV 260


>IMGA|Medtr4g015300.1 Protein of unknown function DUF250
           chr04_pseudomolecule_IMGAG_V3 2789474-2786954 E
           EGN_Mt090430 20090702
          Length = 310

 Score =  114 bits (284), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 74/101 (73%)

Query: 1   MCIGATAARALKSVLQGILLSNEGEKLHSMNLLMFMXXXXXXXXXXXXXXMERDVVGITI 60
           +C+ +TAARA KSVLQ ILLS+EGEKL+SMNLL++M              +E +V+ IT+
Sbjct: 163 ICVASTAARAFKSVLQDILLSSEGEKLNSMNLLLYMAPIAMLVLLPATLLIEGNVLRITM 222

Query: 61  ALARDDMRFIVYLTFNSALAYFVNLANFLVTKHTSALTLQV 101
            LA +D+R   YL  +S+LAYFVNL NFLVTK+TSALTLQV
Sbjct: 223 ELASEDIRIFWYLLLSSSLAYFVNLTNFLVTKYTSALTLQV 263


>IMGA|Medtr8g106450.1 Protein of unknown function DUF250
           chr08_pseudomolecule_IMGAG_V3 23869240-23870704 E
           EGN_Mt090430 20090702
          Length = 354

 Score =  108 bits (270), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/102 (56%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 1   MCIGATAARALKSVLQGILLSNEGEKLHSMNLLMFMXXXXXXXXXXXXXXMERDVVGITI 60
           +C+G+TA RALKSV+QGI+L++E EKLHSMNLL++M              +E +V  ITI
Sbjct: 203 VCVGSTAGRALKSVVQGIILTSEAEKLHSMNLLLYMAPLAAMILLPVTLYIEGNVFAITI 262

Query: 61  ALARDDMRFIVYLTF-NSALAYFVNLANFLVTKHTSALTLQV 101
             AR D  FIV+L   N+ +AY VNL NFLVTKHTSALTLQV
Sbjct: 263 EKARSD-PFIVFLLIGNATVAYLVNLTNFLVTKHTSALTLQV 303