Jatropha Genome Database

JcCA0046101.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046101.30 + phase: 0 /partial
         (219 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g129560.1 RNA polymerase Rpb1, domain 1 chr04_pseudom...   199   7e-52
IMGA|Medtr4g079440.1 RNA polymerase Rpb1, domain 1 chr04_pseudom...    64   8e-11
IMGA|Medtr5g023000.1 Protein kinase; RNA polymerase Rpb1, domain...    60   8e-10
IMGA|Medtr4g079570.1 RNA polymerase Rpb1, domain 1 chr04_pseudom...    57   5e-09

>IMGA|Medtr4g129560.1 RNA polymerase Rpb1, domain 1
           chr04_pseudomolecule_IMGAG_V3 30841943-30843743 E
           EGN_Mt090430 20090702
          Length = 339

 Score =  199 bits (507), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 106/215 (49%), Positives = 136/215 (63%), Gaps = 11/215 (5%)

Query: 1   GATESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEG-TICK 59
           GAT +I+S+ FSFLT+EE+ K S VK+TD  L + +  PV GGLYDPA GPL +  + C+
Sbjct: 7   GATNAIESVAFSFLTNEELLKSSRVKVTDTNLCNNIGHPVRGGLYDPAFGPLLDNRSNCE 66

Query: 60  TCGQRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDKCVKQLE 119
           +CG    +C GH GHI+LVSPVYNPL+F FL K+L RTCF C +FR  R +V +   QLE
Sbjct: 67  SCGMSKDHCSGHFGHIELVSPVYNPLMFLFLGKILNRTCFSCHYFRASRDEVKRRASQLE 126

Query: 120 LIVKGDIVGAKRLDSVLPSETLYPEESDGSHESCSTVHSGAQCHNGEHMKQKEWTSLQFS 179
           LI+KG+I  AK L  +  +ET+   + D      S          G     + WTSLQFS
Sbjct: 127 LILKGNISKAKSLGEIKLNETIDSVDDDDDDSQWS----------GAEQLGESWTSLQFS 176

Query: 180 EATSVLNTFLMPKFKKCKNCGAVNPNITKPMFGWF 214
           EA SV+  FL   +KKC NCG ++P ITKP FG F
Sbjct: 177 EAMSVIYEFLAKDYKKCLNCGCISPKITKPTFGRF 211


>IMGA|Medtr4g079440.1 RNA polymerase Rpb1, domain 1
           chr04_pseudomolecule_IMGAG_V3 15974296-15978831 E
           EGN_Mt090430 20090702
          Length = 281

 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 1/111 (0%)

Query: 4   ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGT-ICKTCG 62
             I  I++S L+D+++ K    ++   R  D   + V GG+ DP LGP ++ +  C TC 
Sbjct: 23  RKIAGISYSTLSDKDITKIGEAQVWQDRYYDAFKKAVEGGVLDPRLGPANKSSPSCATCH 82

Query: 63  QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHFRIHRGQVDK 113
              T+C GH G++ L  PV+N    + + K+L+  C  C    + +  + +
Sbjct: 83  GNFTDCQGHYGYLPLAQPVFNVGFLSTIVKILKCICKNCARILLDKDHIKR 133


>IMGA|Medtr5g023000.1 Protein kinase; RNA polymerase Rpb1, domain 6
           chr05_pseudomolecule_IMGAG_V3 8992181-9001239 E
           EGN_Mt090430 20090702
          Length = 1862

 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 9   ITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGTICKTCGQRLTNC 68
           + F  L+ +E+R+ + V+I      +   +P +GGL DP LG +     C+TC   +  C
Sbjct: 18  VQFGILSPDEIRQMAVVQIEHGETTER-GKPKIGGLSDPRLGTIDRKMKCETCTASMAEC 76

Query: 69  PGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYC 101
           PGH G+++L  P+++      +  +++  CF C
Sbjct: 77  PGHFGYLELAKPMFHIGFLKTVLSIMRCVCFNC 109


>IMGA|Medtr4g079570.1 RNA polymerase Rpb1, domain 1
           chr04_pseudomolecule_IMGAG_V3 16044841-16040381 E
           EGN_Mt090430 20090702
          Length = 281

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 4   ESIDSITFSFLTDEEVRKHSFVKITDPRLLDLVDRPVLGGLYDPALGPLSEGT-ICKTCG 62
             I  ITFS L+D ++      ++      D   + V GG+ DP LGP ++ +  C TC 
Sbjct: 23  RKIAGITFSTLSDTDIINIGETQVWKDSYYDAFRKAVDGGVLDPRLGPANKSSPSCATCH 82

Query: 63  QRLTNCPGHCGHIDLVSPVYNPLLFNFLHKLLQRTCFYCFHF 104
              T+C GH G++ L  PV+N    + + K+L+  C  C   
Sbjct: 83  GNFTDCQGHYGYLPLAQPVFNVGFLSTIVKILKCICKKCARI 124