Jatropha Genome Database

JcCA0046021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0046021.20 + phase: 0 
         (255 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g019800.1 hypothetical protein chr01_pseudomolecule_I...   104   3e-23

>IMGA|Medtr1g019800.1 hypothetical protein
           chr01_pseudomolecule_IMGAG_V3 4163026-4157337 E
           EGN_Mt090430 20090702
          Length = 403

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 86/160 (53%)

Query: 96  GVYADDDQVKNVLGEKYGKLSISELKENKEFKEDLMELDIFITVRLQIVYSRLSIRSVRS 155
           G Y     +   LG KY  +S  EL +  +F +DL+  DI +TVRL +    + I SVR 
Sbjct: 243 GFYVHPYSLCEKLGPKYASISADELNDRNDFYQDLLREDINMTVRLVVNCKGMKINSVRD 302

Query: 156 AFEESVGSRLQKFGGPDNKELLQRFTSQFKDEYKIPRGSVIELSREKGHVLRTTIDGKEA 215
           AFE+S+ +RL K     + + L  F S F +   IP G++IE  R     L T I G   
Sbjct: 303 AFEKSLRARLVKTNPSADFDCLWTFGSYFTENIPIPLGTIIEFKRTVDGRLITEIGGNHV 362

Query: 216 GSVQSKVLCRSILDLYIGEDPFDRQAKENIESKLASLLQN 255
           GSV SK LC++   +YIG+ P   Q K+ I + + ++++N
Sbjct: 363 GSVHSKDLCQAFFGMYIGDVPVCEQTKKEIGTNIVNIIRN 402