Jatropha Genome Database

JcCA0045831.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045831.40 - phase: 0 
         (92 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr5g040160.1 Helix-loop-helix DNA-binding chr05_pseudomo...   115   6e-27
IMGA|Medtr7g009530.1 Helix-loop-helix DNA-binding, identical chr...    75   8e-15
IMGA|Medtr7g065170.1 hypothetical protein chr07_pseudomolecule_I...    47   3e-06

>IMGA|Medtr5g040160.1 Helix-loop-helix DNA-binding
          chr05_pseudomolecule_IMGAG_V3 17108849-17107589 F
          EGN_Mt090430 20090702
          Length = 93

 Score =  115 bits (288), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 69/77 (89%), Gaps = 2/77 (2%)

Query: 17 ITDDQILDLVTKLQQLLPEIGNRRSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLA 76
          ITD QI DL++KLQQL+PE+   RS+KVSA KVLQETCNYI+NLHREVDDLS+RLS+LLA
Sbjct: 17 ITDAQITDLISKLQQLIPELHASRSNKVSATKVLQETCNYIKNLHREVDDLSDRLSQLLA 76

Query: 77 TTD--TAQAAIIRNLLM 91
          +TD  +AQAAIIR+LLM
Sbjct: 77 STDSNSAQAAIIRSLLM 93


>IMGA|Medtr7g009530.1 Helix-loop-helix DNA-binding, identical
          chr07_pseudomolecule_IMGAG_V3 1726600-1726149 H
          EGN_Mt090430 20090702
          Length = 68

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 48/60 (80%), Gaps = 2/60 (3%)

Query: 35 EIGNRRSDKVSAAKVLQETCNYIRNLHREVDDLSERLSELLAT--TDTAQAAIIRNLLMQ 92
          EI      KV A+KVLQETCNYIRNL REVDDLS RLS+LLAT  +D+A+A+IIR+LL Q
Sbjct: 9  EILRETCSKVPASKVLQETCNYIRNLQREVDDLSLRLSQLLATIDSDSAEASIIRSLLNQ 68


>IMGA|Medtr7g065170.1 hypothetical protein
          chr07_pseudomolecule_IMGAG_V3 13340550-13340293 H
          EGN_Mt090430 20090702
          Length = 85

 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/35 (60%), Positives = 30/35 (85%)

Query: 45 SAAKVLQETCNYIRNLHREVDDLSERLSELLATTD 79
          SA+K+LQET N+IR L +EV+DLSERL++L+ + D
Sbjct: 36 SASKILQETLNHIRRLQKEVEDLSERLTQLMDSVD 70