Jatropha Genome Database

JcCA0045831.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045831.20 + phase: 1 /TE/partial
         (63 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g089810.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V...    58   1e-09
IMGA|Medtr5g084570.1 Zinc finger, C2H2-type chr05_pseudomolecule...    58   1e-09
IMGA|Medtr8g078260.1 Ribonuclease H chr08_pseudomolecule_IMGAG_V...    55   8e-09
IMGA|Medtr2g017310.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V...    55   1e-08
IMGA|Medtr2g045680.1 Polynucleotidyl transferase, Ribonuclease H...    54   2e-08
IMGA|Medtr4g078660.1 Polynucleotidyl transferase, Ribonuclease H...    50   3e-07
IMGA|Medtr7g047580.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V...    50   3e-07
IMGA|Medtr4g078840.1 Polynucleotidyl transferase, Ribonuclease H...    50   3e-07
IMGA|Medtr3g147300.1 Polynucleotidyl transferase, Ribonuclease H...    48   9e-07
IMGA|Medtr7g107730.1 TIR; Disease resistance protein; Ribonuclea...    47   2e-06
IMGA|Medtr8g122320.1 Ribonuclease H chr08_pseudomolecule_IMGAG_V...    47   2e-06
IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse transc...    46   5e-06
IMGA|Medtr2g029900.1 RNA-directed DNA polymerase (reverse transc...    45   8e-06
IMGA|Medtr4g134750.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V...    45   1e-05

>IMGA|Medtr7g089810.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V3
          19855204-19852776 E EGN_Mt090430 20090702
          Length = 144

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 4  GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDVL 63
          GG+FRN+EG+W+ G   N   CNA+ A+ WGV  GL +A   G+   EL ++  V+V  L
Sbjct: 27 GGIFRNAEGKWIGGFSRNFDRCNAYLAKLWGVLDGLQIARERGFAKVELHVNSSVVVHTL 86


>IMGA|Medtr5g084570.1 Zinc finger, C2H2-type
          chr05_pseudomolecule_IMGAG_V3 32210807-32209648 H
          EGN_Mt090430 20090702
          Length = 197

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%)

Query: 3  CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDV 62
          CGG+ RN  G W  G    +G C+ F AEFW V++GL +A   G+   EL +D +++V  
Sbjct: 4  CGGILRNDRGEWTCGFSKCMGVCSIFVAEFWRVFKGLKIARESGFHKLELHVDSRLVVSN 63

Query: 63 L 63
          L
Sbjct: 64 L 64


>IMGA|Medtr8g078260.1 Ribonuclease H chr08_pseudomolecule_IMGAG_V3
           15810179-15810910 H EGN_Mt090430 20090702
          Length = 243

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 3   CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDV 62
           CGG+ R  +G WL G   +IG C A+ AE WGV +GL+ A   G+R  E+ +D  V+ + 
Sbjct: 100 CGGIIRGCDGEWLGGFAKSIGMCCAYLAELWGVLEGLNYARNLGFRAVEVNVDSLVVANC 159

Query: 63  L 63
           +
Sbjct: 160 I 160


>IMGA|Medtr2g017310.1 Ribonuclease H chr02_pseudomolecule_IMGAG_V3
           4229391-4228609 H EGN_Mt090430 20090702
          Length = 200

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query: 3   CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSL 41
           CGG+FRNS+GRW+ G    IG C+A  AE WGVY GL +
Sbjct: 143 CGGLFRNSDGRWIKGYMKKIGSCDALHAEMWGVYLGLEM 181


>IMGA|Medtr2g045680.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr02_pseudomolecule_IMGAG_V3 12676583-12675706 H
           EGN_Mt090430 20090702
          Length = 277

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 37/57 (64%)

Query: 4   GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLV 60
           GG+FRN+EG+W+ G   N+  CNA+ +E  GV+ GL +A   G+   EL +D  V+V
Sbjct: 150 GGLFRNAEGKWISGFSHNLSRCNAYLSELCGVFDGLQIARERGFSKVELHVDSSVVV 206


>IMGA|Medtr4g078660.1 Polynucleotidyl transferase, Ribonuclease H
          fold chr04_pseudomolecule_IMGAG_V3 15453816-15452668 H
          EGN_Mt090430 20090702
          Length = 94

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 3  CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDV 62
          C GV R   G+W+      +G C+A+ AE  G+++GL+LA   G+   EL +  QV+V  
Sbjct: 25 CRGVSRGKNGKWICIFSKRLGVCSAYVAELLGIFEGLNLARPHGFHKIELHVVSQVVVTT 84

Query: 63 L 63
          +
Sbjct: 85 I 85


>IMGA|Medtr7g047580.1 Ribonuclease H chr07_pseudomolecule_IMGAG_V3
           11973596-11974800 E EGN_Mt090430 20090702
          Length = 390

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%)

Query: 3   CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQID 55
           CGGVFR  +   +      +G C+A+ AE WG ++GL LA   G+   EL ID
Sbjct: 236 CGGVFRGDKRESICSFSKGLGSCSAYVAELWGAFEGLKLARSHGYHKVELHID 288


>IMGA|Medtr4g078840.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr04_pseudomolecule_IMGAG_V3 15538333-15538742 H
           EGN_Mt090430 20090702
          Length = 112

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 3   CGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDV 62
           C GV R   G+W+      +G C+A+ AE  G+++GL+LA   G+   EL +  QV+V  
Sbjct: 43  CRGVSRGKNGKWICIFSKRLGVCSAYVAELLGIFEGLNLARPHGFHKIELHVVSQVVVTT 102

Query: 63  L 63
           +
Sbjct: 103 I 103


>IMGA|Medtr3g147300.1 Polynucleotidyl transferase, Ribonuclease H
           fold chr03_pseudomolecule_IMGAG_V3 38085012-38087376 E
           EGN_Mt090430 20090702
          Length = 141

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 14/71 (19%)

Query: 4   GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVY--------------QGLSLAWGWGWRT 49
           GGV R+  GRW++G   ++G+ +A+ AE  G+Y              QGL LA   G   
Sbjct: 31  GGVLRDDNGRWVVGFMKHLGHTSAYMAELTGLYQDPPLLVCPRCVFHQGLCLAKNQGVLK 90

Query: 50  TELQIDPQVLV 60
            E+QIDP V+V
Sbjct: 91  LEVQIDPAVIV 101


>IMGA|Medtr7g107730.1 TIR; Disease resistance protein; Ribonuclease H
            chr07_pseudomolecule_IMGAG_V3 25237674-25244066 H
            EGN_Mt090430 20090702
          Length = 1509

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 32/52 (61%)

Query: 4    GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQID 55
            GG+FR+ +G WL G   ++G+    +AE + + QGL  AW +G+R   ++ D
Sbjct: 1332 GGLFRDVDGNWLGGFYGSLGFTTKMKAELYAICQGLITAWDFGYRNILVETD 1383


>IMGA|Medtr8g122320.1 Ribonuclease H chr08_pseudomolecule_IMGAG_V3
           28589012-28589449 H EGN_Mt090430 20090702
          Length = 145

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 2   SCGGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVD 61
           S GG+ RN  G W+ G   + G  +   AE  G+ QGL LA   G+R+  L+ D QV +D
Sbjct: 42  SFGGLLRNHYGGWIQGFSGSCGKASNLFAELSGILQGLQLACDLGYRSITLKFDSQVALD 101

Query: 62  VL 63
           ++
Sbjct: 102 LI 103


>IMGA|Medtr1g010300.1 RNA-directed DNA polymerase (Reverse
           transcriptase); Ribonuclease H
           chr01_pseudomolecule_IMGAG_V3 1684225-1680716 E
           EGN_Mt090430 20090702
          Length = 659

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 4   GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDVL 63
           GG+ RN+ G W  G   + G      AE   +++GL LAW  G+R+  ++ D QV +D++
Sbjct: 518 GGLLRNNRGNWTHGFSGSCGRATNLFAELSAIWKGLQLAWDLGYRSIIMESDSQVALDLI 577


>IMGA|Medtr2g029900.1 RNA-directed DNA polymerase (reverse
          transcriptase), related chr02_pseudomolecule_IMGAG_V3
          8113773-8113991 H EGN_Mt090430 20090702
          Length = 72

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/39 (51%), Positives = 26/39 (66%)

Query: 4  GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLA 42
          GG+FRN EG+W+     N+G CNA+  E WGV  GL +A
Sbjct: 27 GGLFRNVEGKWISDFFRNLGRCNAYLKELWGVIDGLRIA 65


>IMGA|Medtr4g134750.1 Ribonuclease H chr04_pseudomolecule_IMGAG_V3
          32547851-32547069 H EGN_Mt090430 20090702
          Length = 178

 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 35/60 (58%)

Query: 4  GGVFRNSEGRWLLGVGMNIGYCNAFEAEFWGVYQGLSLAWGWGWRTTELQIDPQVLVDVL 63
          GG+ RN+ G W+ G   + G      AE   +++GL LAW  G+R+  ++ D QV +D++
Sbjct: 37 GGLLRNNRGNWIHGFFGSCGRATNLFAELSAIWKGLQLAWNTGYRSIIMESDSQVALDLI 96