Jatropha Genome Database
- JcCA0045351.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0045351.20 - phase: 1 /TE
(1501 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H... 591 e-168
IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H... 587 e-167
IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H... 582 e-166
IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidy... 578 e-165
IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidy... 506 e-143
IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidy... 498 e-141
IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidy... 491 e-138
IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl t... 484 e-136
IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl t... 456 e-128
IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H... 441 e-123
IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidy... 426 e-119
IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H... 421 e-117
IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H... 395 e-110
IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H... 376 e-104
IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H f... 357 3e-98
IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA po... 320 4e-87
IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl tra... 297 3e-80
IMGA|Medtr8g044870.1 Reverse transcriptase, identical chr08_pseu... 293 3e-79
IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA po... 260 4e-69
IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H... 252 9e-67
IMGA|Medtr4g157500.1 polyprotein-like, putative chr04_pseudomole... 240 4e-63
IMGA|Medtr7g045780.1 Retrotransposon gag protein chr07_pseudomol... 236 6e-62
IMGA|Medtr7g123950.1 Retrotransposon gag protein chr07_pseudomol... 223 5e-58
IMGA|Medtr8g044880.1 polyprotein-like, putative chr08_pseudomole... 184 3e-46
IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related chr0... 166 1e-40
IMGA|Medtr6g069740.1 Zinc finger, C4-type chr06_pseudomolecule_I... 165 2e-40
IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H... 162 9e-40
IMGA|Medtr3g019580.1 Retrotransposon gag protein chr03_pseudomol... 159 1e-38
IMGA|Medtr5g086720.1 4D11_12, related chr05_pseudomolecule_IMGAG... 148 2e-35
IMGA|Medtr7g126870.1 hypothetical protein chr07_pseudomolecule_I... 147 6e-35
IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H... 142 1e-33
IMGA|Medtr6g069750.1 Reverse transcriptase, putative chr06_pseud... 141 2e-33
IMGA|Medtr3g080970.1 Retrotransposon gag protein chr03_pseudomol... 114 4e-25
IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related ... 101 3e-21
IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA po... 100 5e-21
IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA po... 97 5e-20
IMGA|Medtr3g068700.1 Polynucleotidyl transferase, Ribonuclease H... 94 4e-19
IMGA|Medtr3g169320.1 Polynucleotidyl transferase, Ribonuclease H... 93 8e-19
IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H f... 86 2e-16
IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H... 85 3e-16
IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger, C... 84 8e-16
IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger, C... 82 2e-15
IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein, chr0... 82 2e-15
IMGA|Medtr5g032700.1 Polynucleotidyl transferase, Ribonuclease H... 80 5e-15
IMGA|Medtr8g005190.1 Integrase, catalytic region, related chr08_... 76 1e-13
IMGA|Medtr1g137300.1 TIR-NBS-LRR type disease resistance protein... 75 2e-13
IMGA|Medtr5g086560.1 Immunoglobulin/major histocompatibility com... 72 1e-12
IMGA|Medtr7g135120.1 Copia protein, related chr07_pseudomolecule... 72 2e-12
IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA po... 72 3e-12
IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-2122... 70 6e-12
IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H... 70 6e-12
IMGA|Medtr3g079600.1 Polynucleotidyl transferase, Ribonuclease H... 70 1e-11
IMGA|Medtr3g162300.1 retrotransposon like protein, putative chr0... 68 4e-11
IMGA|Medtr8g012170.1 polyprotein, putative chr08_pseudomolecule_... 65 4e-10
IMGA|Medtr3g083340.1 Integrase, catalytic region, related chr03_... 64 4e-10
IMGA|Medtr3g083290.1 Integrase, catalytic region, putative chr03... 64 6e-10
IMGA|Medtr5g076530.1 Polynucleotidyl transferase, Ribonuclease H... 64 7e-10
IMGA|Medtr5g015200.1 Helix-turn-helix, AraC type chr05_pseudomol... 63 1e-09
IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative chr... 62 2e-09
IMGA|CU179634_23.1 hypothetical protein CU179634.6 85266-85502 H... 62 2e-09
IMGA|AC137826_20.1 hypothetical protein AC137826.21 78161-79047 ... 61 4e-09
IMGA|Medtr8g015800.1 Putative polyprotein, chr08_pseudomolecule_... 61 5e-09
IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG... 60 1e-08
IMGA|Medtr6g036540.1 Zinc finger, CCHC-type chr06_pseudomolecule... 59 1e-08
IMGA|Medtr5g029040.1 LTRGag-pol-polymerase 3, related chr05_pseu... 58 4e-08
IMGA|Medtr8g043360.1 Copia protein, related chr08_pseudomolecule... 58 4e-08
IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H... 57 7e-08
IMGA|Medtr7g029520.1 Integrase, catalytic region, putative chr07... 55 3e-07
IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H... 55 3e-07
IMGA|Medtr3g040850.1 Retrotransposon gag protein chr03_pseudomol... 55 3e-07
IMGA|Medtr8g096240.1 hypothetical protein chr08_pseudomolecule_I... 55 3e-07
IMGA|Medtr4g045170.1 hypothetical protein chr04_pseudomolecule_I... 55 3e-07
IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA po... 55 4e-07
IMGA|Medtr2g033520.1 hypothetical protein chr02_pseudomolecule_I... 54 7e-07
IMGA|Medtr3g113930.1 hypothetical protein chr03_pseudomolecule_I... 54 7e-07
IMGA|Medtr5g007330.1 Integrase, catalytic region, related chr05_... 53 1e-06
IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse transc... 53 1e-06
>IMGA|Medtr4g079130.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H
EGN_Mt090430 20090702
Length = 1414
Score = 591 bits (1523), Expect = e-168, Method: Compositional matrix adjust.
Identities = 289/579 (49%), Positives = 382/579 (65%), Gaps = 12/579 (2%)
Query: 922 RRSTRDRQPPAWHQEYFMSAAVNHXXXXXXXXXXXXYPLSHYLSLSQFSLSHRAFLASIT 981
R STR+ P++ Q+Y + YP++H LS S S F+ S+
Sbjct: 840 RHSTRNVTAPSYLQDYICN-----------NIHAFTYPITHSLSHHHLSNSRSFFVMSLH 888
Query: 982 SQVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIKYHSDG 1041
+Q EP +Y++A ++ W+ AM ELQAL++ TW LV LPP KPIGCRW+YK+K+H+DG
Sbjct: 889 TQPEPKSYAEASKLDCWKHAMQVELQALEKTGTWKLVDLPPNVKPIGCRWIYKVKFHADG 948
Query: 1042 TIERYKARLVAKGYTQVEGLDYKETFSPTAKMTTLRCLLTIAAARNWFTHQLDVQNAFLH 1101
T+ERYKARLVAKGY Q+EGLDY +T+SP AK+TT+R ++ +++ NW HQLDV NAFLH
Sbjct: 949 TVERYKARLVAKGYNQIEGLDYLDTYSPVAKLTTVRLVIALSSINNWHLHQLDVNNAFLH 1008
Query: 1102 GNLQEIVYMELPPGLCRQGENMVCRLNKSLYGLKQASRNWFSTFSEALASAGFAQSKADY 1161
G+LQE VYM +PPG+ N VC+L KSLYGLKQASR W+ + L + Q+ +DY
Sbjct: 1009 GDLQEDVYMMVPPGIKSSKLNQVCKLTKSLYGLKQASRKWYEKLTSVLFDQHYTQATSDY 1068
Query: 1162 SLFTKQQDTSFTAVLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFSH 1221
SLF K+ TSFT +L+YVDDI++ GNS+ E YFLGIE +H
Sbjct: 1069 SLFVKKTSTSFTVLLVYVDDIILAGNSISEFSHIKSILDSLFKIKDLGQLKYFLGIEVAH 1128
Query: 1222 SKKGIFMSQRKYALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXXXXXXX 1281
SK GI + QRKY LD+L D G GS+P S P + ++KL L D
Sbjct: 1129 SKLGISLCQRKYCLDLLADIGSLGSKPISTPSDSSIKLHLDSSSPFEDVPACRRLVGRLL 1188
Query: 1282 XXTVTRPDIVYSVRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENNLKLSAFC 1341
TRPDI + + LSQ++ +P + H AA+RVLKY+KS PG+GL PR ++L L F
Sbjct: 1189 YLNNTRPDITFITQQLSQFLSQPTQAHHSAALRVLKYLKSCPGKGLFFPRSSSLNLQGFS 1248
Query: 1342 DSDWAGCRTTRRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIHY 1401
D+DWAGC TRRSISG C FLG+SLISW++KKQ VS+SS+EAEYR++A+ EL WI Y
Sbjct: 1249 DADWAGCIDTRRSISGQCFFLGNSLISWRTKKQITVSKSSSEAEYRALASATCELQWILY 1308
Query: 1402 LLRDLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKPQYVP 1461
LL+DL + L+CDNQ+A+HIA NPVFHERTKH+EIDCH++R+KLQSG++K V
Sbjct: 1309 LLKDLHTTCPKLPVLYCDNQSAIHIANNPVFHERTKHLEIDCHLIRDKLQSGVLKLLTVS 1368
Query: 1462 TRLQLADIFTKALGREQFQFLRSKLGIQNIHS-PTXGGV 1499
++ Q+AD FTKAL + F L SKLG+ NI+ PT GG+
Sbjct: 1369 SQDQVADFFTKALLPKPFNILLSKLGLINIYQPPTCGGI 1407
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 286/869 (32%), Positives = 422/869 (48%), Gaps = 126/869 (14%)
Query: 21 KAGNMDPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAP 80
+ N D ++VH S+ P + + KL G NY +WS+ + +L KNKLGFI+GS+ P
Sbjct: 4 RNSNPDTESVFFVHPSESPNSLSITPKLTGSNYIAWSRTVERSLGTKNKLGFINGSIPMP 63
Query: 81 SQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAI 140
+++ A W +CN L+ SWL +SV +A V+ TA +VW D K++FS+ + I
Sbjct: 64 DEDD--LNRAAWERCNHLVQSWLINSVSDSIAPTVVFCDTALEVWLDLKERFSKIDRIRI 121
Query: 141 FQIQKSIATISQGSMSVASYYTKLKALWDELENYRDPYTC-----------NHAKAHQEQ 189
++ SI + QG+ +V Y+T++K+LW+EL ++R C AK H+
Sbjct: 122 ANLRSSINNLKQGAKTVLDYFTEMKSLWEELSSHRPIPNCVCVHQCRCLASRIAKTHRN- 180
Query: 190 LQEDRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIA 249
ED++MQFL +N+ + VR+ +L++ PLP++ + YSLV+QEE+ +S P+ S
Sbjct: 181 --EDQIMQFLTSLNDQFSVVRTQVLLLDPLPSLNKVYSLVVQEESNH--ASLPSLSVADD 236
Query: 250 ANIQSKASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQ 309
+IQ A+ + + R G + + + + C FC++ HT D C LK+ G P
Sbjct: 237 TSIQINATDTRRFQ------RRGKSYSQPKPTR-LCTFCNRTNHTVDFCYLKH---GFPN 286
Query: 310 QNR-----GSRSKPQSAANMAKNSSMNDGNSLMGFSPEYLQQLAKALSTMN-QNSSSGNS 363
N+ S+ S A + + S NS + FS + L QL L N +S
Sbjct: 287 VNKTQPRVNVASQEDSDAGNSSSGSSTSANSNISFSQDQLTQLVSMLQQANLVVPASSTP 346
Query: 364 DTFAN-----------------AAGLFSTFISHVNSIFTNS---WILDSGATDHMTSHPS 403
T +N +AG+ +F S TN W++DSGA +H+ +
Sbjct: 347 QTTSNHIAASPLISSSISASESSAGIPVSFPSSS----TNKPPFWLIDSGANEHICCDIT 402
Query: 404 LLSKRQPSFSHTVNLPNGTSAPITHTGNMVFNQDITLKNVLCVPTFRLNLISASKITKDL 463
S V+LPNGT + + G + FN L +VL P F LNLIS +K+ + L
Sbjct: 403 FFSSFYRIKPVNVSLPNGTIVLVHYAGTVSFNSKFYLNHVLYSPNFLLNLISVAKLCESL 462
Query: 464 NCSVTFFPDSCILQDLTTGKMIGWGKQHGGLYYMMQDSISPASFQVSNSP---------- 513
C F D C++QD + KMIG KQ GLY S S + ++ +SP
Sbjct: 463 TCFFHFSLDKCLIQDQQSLKMIGLAKQMDGLYKFYPSS-SSCNLELFSSPTKYCNVVLPS 521
Query: 514 ------------DLWHSRLGHVSFSHFKXXXXXXP---INKETVSFHNNCSICPLAKQTR 558
LWH RLGH+S + P I+ + + C +C AK
Sbjct: 522 SCNKIPTFVPSDTLWHFRLGHLSKQRLQTLSLLYPSIKIDNKAI-----CDLCHFAKHKH 576
Query: 559 LPFPISSITTKIPFELLHCDVWGPHKIPSHSGARFFLTIVDDFTRCTWVFLMKQKSETSD 618
LPF +D +R W+ L+K K+E S
Sbjct: 577 LPF-----------------------------------TSNDHSRFLWIILLKTKAEVST 601
Query: 619 LLIKFIQFTKTQFNTSVKIIRTDNGSEFQPLQNFLLNQGIEFQNTCVYTPQQNGVVERKH 678
+ FI K F+T+ K IRTDNG EF L + GI Q +CV TPQQNG VERKH
Sbjct: 602 HVKNFITMIKNHFHTTPKFIRTDNGPEFM-LSTLYSSHGIIHQKSCVETPQQNGRVERKH 660
Query: 679 RHILNVARSLFFQSHVPLKFWGECILTAVYLINRLPTPLLSNQSPYEKLYKRPPSLDHLR 738
+HILNV R+L +QS +P +W I AV+LINR+PTP L+NQSPY L+ + P +
Sbjct: 661 QHILNVGRALLYQSKLPPAYWCYAIQHAVFLINRVPTPTLNNQSPYFVLHHKLPDSSLFK 720
Query: 739 IFGCQCYATNVHP-KGKFDPRAIRCVFMGYPHGKKGYKLYDLSTQKFLISRDVYFQEDTF 797
+FGC CYA+ + K RA + +F+GY G KG+ LYDL +++ ISR V F E+
Sbjct: 721 VFGCLCYASTLQSHTTKLKHRARKSIFIGYQSGYKGFTLYDLHSREIFISRHVTFHENFL 780
Query: 798 PFAXXXXXXXXXXXXXXVAHNFPLLPIFP 826
P+ H P+ P P
Sbjct: 781 PYPHTSSSTSPDWQYFSYFHPTPVAPNLP 809
>IMGA|Medtr4g080020.1 Polynucleotidyl transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H
EGN_Mt090430 20090702
Length = 1275
Score = 587 bits (1513), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/580 (50%), Positives = 382/580 (65%), Gaps = 12/580 (2%)
Query: 922 RRSTRDRQPPAWHQEYFMSAAVNHXXXXXXXXXXXXYPLSHYLSLSQFSLSHRAFLASIT 981
RRS R R P Q+Y ++ YPLSHY++ + S +H +F++S+
Sbjct: 686 RRSNRVRTAPLHLQDYVCNSV-----------HSTTYPLSHYINYNNISTNHASFISSLQ 734
Query: 982 SQVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIKYHSDG 1041
+ EPTTY +A + W AM AEL AL++ TW +V LP KPIGCRW+YK+K+++DG
Sbjct: 735 TTPEPTTYVEASKHDCWNKAMQAELLALEKTGTWDIVDLPAYVKPIGCRWIYKVKHNADG 794
Query: 1042 TIERYKARLVAKGYTQVEGLDYKETFSPTAKMTTLRCLLTIAAARNWFTHQLDVQNAFLH 1101
+IERYKARLVAKGYTQ+EGLDY ET+SP AK+TT+R ++ +A+ NW HQLDV NAFLH
Sbjct: 795 SIERYKARLVAKGYTQIEGLDYFETYSPVAKLTTVRLVIALASIHNWHLHQLDVNNAFLH 854
Query: 1102 GNLQEIVYMELPPGLCRQGENMVCRLNKSLYGLKQASRNWFSTFSEALASAGFAQSKADY 1161
G LQE VYM LPPG+ + VC+L KSLYGLKQASR W+ + L + Q+ +D+
Sbjct: 855 GELQEDVYMILPPGINIAKPHQVCKLKKSLYGLKQASRQWYEKLTSVLIQQHYIQASSDH 914
Query: 1162 SLFTKQQDTSFTAVLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFSH 1221
SLF K+ SFT +L+YVDDI++ G S+ E YFLGIE +H
Sbjct: 915 SLFIKKSSDSFTILLVYVDDIILAGTSLLEFQNIKSILDTSFKIKDLGQLKYFLGIEVAH 974
Query: 1222 SKKGIFMSQRKYALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXXXXXXX 1281
SK GI + QRKY LD+L DSGH GS+P S P + + KL D
Sbjct: 975 SKLGISLYQRKYCLDLLHDSGHIGSKPISTPSDPSTKLHHDTSTPYDDIPAYRRLVGRLL 1034
Query: 1282 XXTVTRPDIVYSVRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENNLKLSAFC 1341
TRPDI + + LSQ++ P H AA+R L+Y+KS PG+GL PR ++L L F
Sbjct: 1035 YLNNTRPDITFITQQLSQFLSNPTIAHHNAALRTLRYLKSCPGKGLFFPRNSSLTLQGFS 1094
Query: 1342 DSDWAGCRTTRRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIHY 1401
D+DWAGC TR+S++G C FLG+SLISW++KKQT VSRSS+EAEYR++A+ E+ W+ Y
Sbjct: 1095 DADWAGCLDTRKSVTGQCFFLGNSLISWRTKKQTTVSRSSSEAEYRALASATCEIQWLLY 1154
Query: 1402 LLRDLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKPQYVP 1461
LL DL ++ + P L+CDNQ+ALHIAANPVFHERTKH+EIDCHIVREKLQ+G++K V
Sbjct: 1155 LLNDLHITCSKPPVLYCDNQSALHIAANPVFHERTKHLEIDCHIVREKLQAGVLKLLPVS 1214
Query: 1462 TRLQLADIFTKALGREQFQFLRSKLGIQNIHS-PTXGGVL 1500
++ Q+AD FTKAL + F L SKLG+ +I+ PT GG+L
Sbjct: 1215 SQDQIADFFTKALLPKTFSLLLSKLGLIDIYQRPTCGGLL 1254
Score = 186 bits (473), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 126/407 (30%), Positives = 202/407 (49%), Gaps = 51/407 (12%)
Query: 26 DPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEK 85
D +VH S+ ++V K NG NY +WS++M AL AK KLGFI+G + P ++
Sbjct: 13 DVDAALFVHPSEGLHSLVVTPKFNGTNYLAWSRSMQRALGAKCKLGFINGEIPVPDADD- 71
Query: 86 PTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQK 145
W +CN L+ SW+ +S+ +A+ V+ +A +VW D ++FS+ + I ++
Sbjct: 72 -LNRTAWERCNHLVQSWILNSLSESIAQTVVFCDSASEVWQDLHERFSKTDRIRIATLRS 130
Query: 146 SIATISQGSMSVASYYTKLKALWDELENYR--------DPYTCNHAKAHQEQLQEDRLMQ 197
SI + QG+ SV Y+T+LK LW+E ++ P C + + ED++MQ
Sbjct: 131 SINILKQGTKSVLDYFTELKGLWEEFSSHLPIPNCICVHPCRCEATRVAKTHRTEDQIMQ 190
Query: 198 FLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIAANIQSKAS 257
FL G+N+ + V++ IL++ PLP++ + YS+VIQEE+ SS P+ S + +NIQ AS
Sbjct: 191 FLTGLNDQFSVVKTQILLLDPLPSLNKVYSMVIQEESNN--SSIPSVSVSDDSNIQLNAS 248
Query: 258 GIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQQNRGSRSK 317
+N + SG + R +C FC + HT D C K+ G P + +R+
Sbjct: 249 DARNFQPRGKGPSSGSNNKPTR----FCSFCKRTNHTVDFCYQKH--GYPNVIKQQARTS 302
Query: 318 PQSAANM------AKNSSMN-DGNSLMGFSPEYLQQLAKALSTMNQNS------------ 358
+ A + + S++N NS G S E QL L N +
Sbjct: 303 ANNIAQVDFDAASSNASNLNVSANSNTGLSQEQFTQLVSLLQQSNLVASSSPSPGPSSNT 362
Query: 359 -------SSGNSDTFANAAGLFSTFISHVNSIFTNSWILDSGATDHM 398
SS S T + G+ +F SH+ W++DSGA +H+
Sbjct: 363 ITATPLVSSSISATEISPTGI--SFPSHL-----THWLIDSGANEHI 402
Score = 179 bits (454), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 95/208 (45%), Positives = 129/208 (62%), Gaps = 9/208 (4%)
Query: 595 LTIVDDFTRCTWVFLMKQKSETSDLLIKFI--QFTKTQFNTSVKIIRTDNGSEFQPLQNF 652
L ++D+ + T F + K L K+I T F + K IR DNG EF L++F
Sbjct: 421 LYLMDNLSLKTIGFAKQMKG-----LYKYIPPAATSALFQITSKTIRIDNGPEFM-LKDF 474
Query: 653 LLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILTAVYLINR 712
+ GI +CV TPQQNG VERKH+HILNV R+L FQS +P FW +L AV+LINR
Sbjct: 475 YASHGIIHHKSCVETPQQNGRVERKHQHILNVVRALLFQSKLPPTFWSYAVLHAVFLINR 534
Query: 713 LPTPLLSNQSPYEKLYKRPPSLDHLRIFGCQCYATNV-HPKGKFDPRAIRCVFMGYPHGK 771
+ TPLL NQSPY L+ + PSLD ++FGC CYA+ + + + K RA + +F+GY G
Sbjct: 535 VSTPLLHNQSPYLVLHNKLPSLDLFKVFGCLCYASTLQNHRTKLQSRARKSIFLGYQSGY 594
Query: 772 KGYKLYDLSTQKFLISRDVYFQEDTFPF 799
KGY L+DL++++ ISR V F E P+
Sbjct: 595 KGYVLFDLTSREIFISRHVSFHETILPY 622
>IMGA|Medtr5g048830.1 Polynucleotidyl transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 20699955-20695616 H
EGN_Mt090430 20090702
Length = 1396
Score = 582 bits (1501), Expect = e-166, Method: Compositional matrix adjust.
Identities = 292/580 (50%), Positives = 389/580 (67%), Gaps = 12/580 (2%)
Query: 922 RRSTRDRQPPAWHQEYFMSAAVNHXXXXXXXXXXXXYPLSHYLSLSQFSLSHRAFLASIT 981
R STR++ P++ Q+Y ++ YP+SHYLS ++ S H +++ S+
Sbjct: 814 RHSTRNKISPSYLQDYVCNSI-----------NSTTYPISHYLSHNKLSSHHSSYVLSLH 862
Query: 982 SQVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIKYHSDG 1041
+ EP TY++A + WQ AM ELQAL++ TW+ V LPP KPIGCRWV+KIK H+DG
Sbjct: 863 THNEPKTYAEANKHECWQKAMQVELQALEQTGTWNFVDLPPNVKPIGCRWVFKIKRHADG 922
Query: 1042 TIERYKARLVAKGYTQVEGLDYKETFSPTAKMTTLRCLLTIAAARNWFTHQLDVQNAFLH 1101
+IERYKARLVAKGYTQVEGLDY +TFSP AK+TT+R ++ +A+ +W HQLDV NAFLH
Sbjct: 923 SIERYKARLVAKGYTQVEGLDYFDTFSPVAKLTTVRLIIALASINHWHLHQLDVNNAFLH 982
Query: 1102 GNLQEIVYMELPPGLCRQGENMVCRLNKSLYGLKQASRNWFSTFSEALASAGFAQSKADY 1161
G+LQE VYM LPPG+ + N VC+LNKSLYGLKQASR W+ + L + Q+ +D+
Sbjct: 983 GDLQENVYMTLPPGISAKHSNTVCKLNKSLYGLKQASRKWYDKLTSILLKHQYTQAHSDH 1042
Query: 1162 SLFTKQQDTSFTAVLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFSH 1221
SLFTK+ TS+T +L+YVDDI++ G+S++E +FLG+E +H
Sbjct: 1043 SLFTKKTGTSYTILLVYVDDIILAGDSLEEFQYIKSILDTLFKIKDLGQLKFFLGLEVAH 1102
Query: 1222 SKKGIFMSQRKYALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXXXXXXX 1281
S+ GI + Q+KY LD+L DSG GS+P S P + ++KL D
Sbjct: 1103 SQLGISLCQKKYCLDLLADSGTIGSKPASTPSDPSLKLHKDGALPYEDIPSYRRLIGRLL 1162
Query: 1282 XXTVTRPDIVYSVRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENNLKLSAFC 1341
TRPDI Y + LSQ++ P H AA+RVL+Y+K+ PG+GL PR + L+L +
Sbjct: 1163 YLNTTRPDITYITQQLSQFLSAPTHTHHSAALRVLRYLKNCPGKGLFFPRNSPLQLQGYS 1222
Query: 1342 DSDWAGCRTTRRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIHY 1401
D+DWAGC TRRSISG C FLG+SLISW++KKQ VSRSS+EAEYR++A+ EL W+ Y
Sbjct: 1223 DADWAGCLDTRRSISGQCFFLGNSLISWRTKKQVTVSRSSSEAEYRALASATCELQWLIY 1282
Query: 1402 LLRDLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKPQYVP 1461
LL+DL V+ T LFCDNQ+ALHIAANPVFHERTKH+EIDCHIVREKL SG++K V
Sbjct: 1283 LLQDLHVTCTKLPVLFCDNQSALHIAANPVFHERTKHLEIDCHIVREKLHSGILKLLPVS 1342
Query: 1462 TRLQLADIFTKALGREQFQFLRSKLGIQNIHS-PTXGGVL 1500
++ Q+AD FTK+L + F L SKL + +I+ P GG+L
Sbjct: 1343 SKEQVADFFTKSLHPQPFNLLLSKLSLLDIYQPPACGGLL 1382
Score = 427 bits (1097), Expect = e-119, Method: Compositional matrix adjust.
Identities = 289/818 (35%), Positives = 410/818 (50%), Gaps = 109/818 (13%)
Query: 26 DPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEK 85
D P+YVH S+ P ++V KL+G NY +W+++M +L KNKLGFI+GS+E P ++
Sbjct: 9 DQESPFYVHPSEGPSSLIVSPKLDGSNYLAWNRSMKRSLGTKNKLGFINGSIEQPDLDD- 67
Query: 86 PTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQK 145
+ W +CN L+ SW+ +SV +A+ V+ TAY+VW D ++FS+ + I ++
Sbjct: 68 -LNRSAWERCNFLVQSWIINSVSDSIAQTVVFYDTAYEVWQDLHERFSKADRIRIANLRS 126
Query: 146 SIATISQGSMSVASYYTKLKALWDELENYR--------DPYTCNHAKAHQEQLQEDRLMQ 197
SI + QG+ SV Y+T+LK+LW+EL ++R C+ + + ED++MQ
Sbjct: 127 SINNLKQGAKSVLEYFTELKSLWEELSSHRPIPSCVCVHACRCDATRVAKIYRTEDQIMQ 186
Query: 198 FLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIAANIQSKAS 257
FL G+N+++ V++ +L++ PLP + + YSLV+QEE+ L + S +NIQ AS
Sbjct: 187 FLTGLNDNFGVVKTQVLLLNPLPPLNKVYSLVVQEESNNSLPISISAS--DDSNIQLNAS 244
Query: 258 GIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRC-RLKNNKGGPPQQNRGSRS 316
+K ++ G + YC FC K HT D C +L + P QQ++ + S
Sbjct: 245 EVKKSQG------RGKGFVNSQKPNRYCTFCHKTNHTVDFCYQLHGHPSFPKQQSKVTAS 298
Query: 317 KPQSAANMA-KNSSMNDGNSLMGFSPEYLQQLAKALSTMN----------QNSSSGNSDT 365
N A + S SPE QL L + N+++ + T
Sbjct: 299 HEIPDENGALDHGLGGSTGSGTSLSPEQYTQLVSLLQQASLISSSSPPPTSNATTNHVQT 358
Query: 366 FANAAGLFSTFISHVNSIFTNS--WILDSGATDHMTSHPSLLSKRQPSFSHTVNLPNGTS 423
+ S I + W+LDSGA +H+ S+ S + VNLPN TS
Sbjct: 359 TPFVSNNISASPHDTEGISSKPYYWLLDSGANEHICSNLSFFTSLHRIKPVRVNLPNKTS 418
Query: 424 APITHTGNMVFNQDITLKNVLCVPTFRLNLISASKITKDLNCSVTFFPDSCILQDLTTGK 483
+ GN+VF P F L D T+ K
Sbjct: 419 IIVHFAGNVVF-----------TPQFYLT------------------------NDQTSLK 443
Query: 484 MIGWGKQHGGLYY-----------MMQD--------SISPASFQVSNSPDLWHSRLGHVS 524
MIG KQ GLY +M SIS S LWH RLGH+S
Sbjct: 444 MIGLAKQVAGLYRYTPPSDFSSTSLMHSPNKSCNFSSISCNSNNCIPVAALWHFRLGHLS 503
Query: 525 FSHFKXXXXXXPINKETVSFHNN---CSICPLAKQTRLPFPISSITTKIPFELLHCDVWG 581
P HNN C IC +KQ LPF S FELLH D+WG
Sbjct: 504 NQRMIKMSHLYP-----SIVHNNRDVCDICHFSKQKHLPFSSSLSHASTNFELLHFDIWG 558
Query: 582 PHKIPSHSGARFFLTIVDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTD 641
P I S G R+FLTI+DD +R W+ L+K KSE S + FI +TQF+ + K +R+D
Sbjct: 559 PISISSVHGHRYFLTILDDHSRFLWIILLKSKSEVSLHVKNFILMIRTQFHVTPKYVRSD 618
Query: 642 NGSEFQPLQNFLLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGE 701
NG EF L +F + GI Q +CV TPQQNG VERKH+HILNV R+L +QS +P FW
Sbjct: 619 NGPEFL-LNDFYSSHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPSFWSY 677
Query: 702 CILTAVYLINRLPTPLLSNQSPYEKLYKRPPSLDHLRIFGCQCYATNVHPKGKFDPRAIR 761
IL AV+LINR+PT +L NQSPY L+ + P +++F K K PRA +
Sbjct: 678 AILHAVFLINRVPTHVLHNQSPYHVLFHKLPD---IQLF-----------KSKLQPRARK 723
Query: 762 CVFMGYPHGKKGYKLYDLSTQKFLISRDVYFQEDTFPF 799
+F+GY G KGY L+DLST++ +SR V F E+ P+
Sbjct: 724 SLFLGYKSGYKGYHLFDLSTREIFVSRHVIFHENILPY 761
>IMGA|Medtr5g072700.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H
EGN_Mt090430 20090702
Length = 1413
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/579 (50%), Positives = 375/579 (64%), Gaps = 9/579 (1%)
Query: 921 LRRSTRDRQPPAWHQEYFMSAAVNHXXXXXXXXXXXXYPLSHYLSLSQFSLSHRAFLASI 980
+R+S+R QPP Q+Y S + + YP+SHYLS + S SH AF S+
Sbjct: 827 IRKSSRITQPPTHLQDYVCSVSDD--------TSFVQYPISHYLSYNNLSSSHCAFALSL 878
Query: 981 TSQVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIKYHSD 1040
S EPTTY++A + W+ AM EL AL+ TW LV LPP KPI CRW+YKIK+H+D
Sbjct: 879 DSHTEPTTYAEASKFDCWKQAMQVELSALENTGTWKLVDLPPNVKPIVCRWIYKIKHHAD 938
Query: 1041 GTIERYKARLVAKGYTQVEGLDYKETFSPTAKMTTLRCLLTIAAARNWFTHQLDVQNAFL 1100
G+IERYKARLVAKGY Q+EGLDY +T+SP AK+TT+R ++ +A NW HQLDV NAFL
Sbjct: 939 GSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRTIIALAYMNNWHIHQLDVNNAFL 998
Query: 1101 HGNLQEIVYMELPPGLCRQGENMVCRLNKSLYGLKQASRNWFSTFSEALASAGFAQSKAD 1160
HG+LQE VYM +P G+ N VC+L KSLYGLKQASR W+ + L + QS +D
Sbjct: 999 HGDLQEDVYMIVPQGITPSKSNQVCKLIKSLYGLKQASRKWYEKLTSLLVHHHYLQSTSD 1058
Query: 1161 YSLFTKQQDTSFTAVLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFS 1220
+SLF K+ TSFTA+L+YVDD+++TG S+ E YFLG+E +
Sbjct: 1059 HSLFIKKTYTSFTALLVYVDDVIITGTSLSEFQDIKAILHSALEIKDLGQLKYFLGLEVA 1118
Query: 1221 HSKKGIFMSQRKYALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXXXXXX 1280
HS +GI + QRKY LD+L D G ++P S P + + KL G D
Sbjct: 1119 HSSQGISLCQRKYCLDLLTDIGFLAAKPASTPSDPSCKLHADGGPPFSDIPSYRRLIGRL 1178
Query: 1281 XXXTVTRPDIVYSVRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENNLKLSAF 1340
T TRP I ++ + LSQ+++ P + H+ AA R+L+Y+K +PGQGL PR+++L LS +
Sbjct: 1179 IYLTNTRPYITFATQQLSQFLNSPTEKHYIAATRILRYLKKSPGQGLFFPRDSSLFLSGY 1238
Query: 1341 CDSDWAGCRTTRRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIH 1400
D+DWAGC +RRSISG C FLG SLISWK+KKQ VSRSS+EAEYR++ EL W+
Sbjct: 1239 SDADWAGCLDSRRSISGQCFFLGHSLISWKTKKQLTVSRSSSEAEYRALGAATCELQWLL 1298
Query: 1401 YLLRDLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKPQYV 1460
YLL DL V+ L+CDNQ+ALHIAANPVFHERTKH+EIDCH+VREKLQ+ ++K V
Sbjct: 1299 YLLHDLHVTTVKLHVLYCDNQSALHIAANPVFHERTKHLEIDCHLVREKLQACIMKLLPV 1358
Query: 1461 PTRLQLADIFTKALGREQFQFLRSKLGIQNI-HSPTXGG 1498
+ QLAD FTK L + F L KLG+ NI H P G
Sbjct: 1359 TSADQLADFFTKPLLPQPFHTLLFKLGMLNIYHFPACAG 1397
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 277/804 (34%), Positives = 408/804 (50%), Gaps = 66/804 (8%)
Query: 21 KAGNMDPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAP 80
+ D +YVH S+ P +LV L+G NY +WS++MI A KNKL F+DG +E P
Sbjct: 3 RQNQQDTESVFYVHPSEGPNSVLVTPLLDGTNYLAWSRSMIRAFVVKNKLKFVDGYMEIP 62
Query: 81 SQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAI 140
+++ + W +CN LI SW+ +SV +A+ ++ + A W+D K++FS+ + I
Sbjct: 63 DEDD--LNRSAWERCNHLIQSWIINSVSPPIAQTLVFHENAVDGWSDLKERFSKADKIRI 120
Query: 141 FQIQKSIATISQGSMSVASYYTKLKALWDELENYR--------DPYTCNHAKAHQEQLQE 192
++ I + QGS SV Y+T++K LW+EL ++R P C + ++ E
Sbjct: 121 ASLRSKINNMKQGSKSVLEYFTEMKTLWEELNSHRPMPHCTCPHPCRCAAMRETRQYRIE 180
Query: 193 DRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQR-QLSSEPAESFTIAAN 251
D++MQFL+G+N+ + V++ ILM+ P+P++ + Y LV+QEE+ L+S E F++
Sbjct: 181 DQVMQFLIGLNDQFNVVKTQILMLDPIPSINRVYYLVVQEESNNLSLASSITEPFSVVNA 240
Query: 252 IQSKASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQQN 311
S+ + G C FC K HT D C K+ P+QN
Sbjct: 241 ADSRKPQGR-----------GRGYSNGYKPPRQCTFCGKSNHTVDYCYQKHGHPNFPKQN 289
Query: 312 RGSRSKPQSAANMAKNSSMNDGNSLMGFSPEYLQQLAKAL---------------STMNQ 356
+ + A+ S + S S E Q L +T N
Sbjct: 290 SSVNASSSNDDVEAQPGSCSASPSSSSISQEQYDQFLSLLQQVNLLPVASTPTSSATANH 349
Query: 357 NSSSGNSDTFANAAGLFSTFISHVNSIFTNSWILDSGATDHMTSHPSLLSKRQPSFSHTV 416
+S SD+ S+ S S ++ W LDSGA +H+ S + V
Sbjct: 350 VHTSSTSDSAFPIQSGISSIFSCSISSKSDVWFLDSGANEHIVSSTHWFTSFHKINPKPV 409
Query: 417 NLPNGTSAPITHTGNMVFNQDITLKNVLCVPTFRLNLISASKITKDLNCSVTFFPDSCIL 476
NLPNGTS + + G + F +++VL P+F LNLIS K+ L+C +F C L
Sbjct: 410 NLPNGTSVLVEYAGTIHFTPHFYIEDVLYSPSFTLNLISIFKVCSSLHCYASFHDKKCFL 469
Query: 477 QDLTTGKMIGWGKQHGGLYYMMQDSISPASFQVSNSPDLWHSRLGHVSFSHFKXXXXXXP 536
QDL + KMIG G+Q GL LGHVS P
Sbjct: 470 QDLHSQKMIGLGEQVRGL-------------------------LGHVSNKRLNHMSHLYP 504
Query: 537 INKETVSFHNNCSICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHKIPSHSGARFFLT 596
TV H C IC AKQ +L FP S FELLH D+WGP + S R+FLT
Sbjct: 505 --TLTVDNHATCDICQFAKQKKLSFPTSVSVASSKFELLHFDIWGPLAVTSIHNHRYFLT 562
Query: 597 IVDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEFQPLQNFLLNQ 656
I+DD++ W+ L+K K E S + FI TQ++ + K++R+DNG EF L +F ++
Sbjct: 563 ILDDYSIFFWIVLLKSKYEVSQHVKNFINLIHTQYHITPKVVRSDNGPEFL-LNSFYASK 621
Query: 657 GIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILTAVYLINRLPTP 716
GI +CV TPQQNG VERKH+HILNV R+L FQS +P +W +L A+++INR+ +P
Sbjct: 622 GIVHHKSCVETPQQNGRVERKHQHILNVGRALLFQSKLPSSYWSYALLHAIFIINRVTSP 681
Query: 717 LLSNQSPYEKLYKRPPSLDHLRIFGCQCYATNVHP-KGKFDPRAIRCVFMGYPHGKKGYK 775
L N+SPY+ L+ P + ++FG CY+T + + K RA + VF+GY G KGY
Sbjct: 682 TLHNKSPYQLLHGTIPDVQTFKVFGSLCYSTTLQSHRTKLSARARKTVFLGYAVGYKGYV 741
Query: 776 LYDLSTQKFLISRDVYFQEDTFPF 799
L D+ T++ ISR V F E P+
Sbjct: 742 LLDIHTREIHISRHVQFHEHILPY 765
>IMGA|Medtr8g044140.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H
EGN_Mt090430 20090702
Length = 920
Score = 506 bits (1303), Expect = e-143, Method: Compositional matrix adjust.
Identities = 306/816 (37%), Positives = 441/816 (54%), Gaps = 66/816 (8%)
Query: 27 PSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEKP 86
P + YYVH SD P + + L+ NY SW+++M AL AKNK F+DGS+ P+ +
Sbjct: 26 PGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDP- 84
Query: 87 TELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKS 146
WN+CN L+ SW+ +SVE +A+ ++ + A VW + K++FSQ + I ++Q
Sbjct: 85 -NFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLENAIDVWNELKERFSQGDFIRISELQCE 143
Query: 147 IATISQGSMSVASYYTKLKALWDELENYRD------PYTCN------HAKAHQEQLQEDR 194
I ++ Q S SV ++T LK LW+ELE Y P+ C +AK HQ ++ R
Sbjct: 144 IFSLKQDSRSVTEFFTALKVLWEELEAYLPTPVCACPHRCMCITGVMNAK-HQHEIT--R 200
Query: 195 LMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIAANIQS 254
++FL G+N+S+ VRS IL+M PLP + + +S+V+Q E Q ++S P E TI N
Sbjct: 201 SIRFLTGLNDSFDLVRSQILLMNPLPTINKIFSMVMQHERQFKISI-PVEDSTILVNSAG 259
Query: 255 KASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQQNRGS 314
K+ G R K C FC + GHT D C K+ G PP +
Sbjct: 260 KSQG-----------RGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKH--GFPPNYGNKN 306
Query: 315 RSKPQSAANMAKNSSMND--------GNS----LMGFSPEYLQQLAKALSTMNQNSSSGN 362
+K +++ + +N D GNS G + E +QL L + +SS N
Sbjct: 307 FAKVNNSS-IEQNEEREDLDDSKSCKGNSNTEPSFGITKEQYEQLVTLLQSQQASSSKVN 365
Query: 363 SDTFAN--AAGLFSTFISHVNSIFTNSWILDSGATDHMTSHPSLLSKRQPSFSHTVNLPN 420
N +G+ T + +S F +WI+DSGA+DH+ S P + LPN
Sbjct: 366 LSHVTNHVTSGITRTSYTMNHSSF-GTWIVDSGASDHICSSIKFFDSYAPIIPVHIKLPN 424
Query: 421 GTSAPITHTGNMVFNQDITLKNVLCVPTFRLNLISASKITKDLNCSVTFFPDSCILQDLT 480
G A +G + F+ + +NVL V F+LNL+S K+ D NC VTF D C +QD +
Sbjct: 425 GNMAIAKFSGTVNFSPGLIARNVLYVAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKS 484
Query: 481 TGKMIGWGKQHGGLYYMMQDS-------------ISPASFQVSNSPD--LWHSRLGHVSF 525
KM G G+ GLY++ S +S +S + P LWH RLGH+S
Sbjct: 485 NLKMTGLGELIEGLYFLNLGSQVFSQFNHQPVIALSQSSSSTTFLPQEALWHFRLGHLSN 544
Query: 526 SHFKXXXXXXPINKETVSFHNNCSICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHKI 585
P K V ++ C IC ++ +LPF +S +EL+H D+WGP
Sbjct: 545 DRLLRMQQHFPCIK--VDSNSVCDICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPIST 602
Query: 586 PSHSGARFFLTIVDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSE 645
S G ++F+T +DD++R TW+ L K KSE S + FI + QFN VK +RTDNG E
Sbjct: 603 HSIHGHKYFITALDDYSRFTWIMLCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPE 662
Query: 646 FQPLQNFLLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILT 705
F + +F ++GIE Q +CV TPQQNG VERKH+HILNVAR+L FQS +P FW +L
Sbjct: 663 FL-MPDFYSSKGIEHQTSCVETPQQNGRVERKHQHILNVARALLFQSKLPKIFWSYSVLH 721
Query: 706 AVYLINRLPTPLLSNQSPYEKLYKRPPSLDHLRIFGCQCYATNVHP-KGKFDPRAIRCVF 764
A+Y+INR+PTPLL N+SPY Y P L++ ++FGC YA+ +H + KFD RA +CVF
Sbjct: 722 AIYIINRIPTPLLQNKSPYFLRYGHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVF 781
Query: 765 MGYPHGKKGYKLYDLSTQKFLISRDVYFQEDTFPFA 800
+GY G KG LYDL+ + SR+V + E P++
Sbjct: 782 LGYKQGIKGAILYDLNHKTIFASRNVTYHEHILPYS 817
>IMGA|Medtr2g104160.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H
EGN_Mt090430 20090702
Length = 790
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 284/782 (36%), Positives = 425/782 (54%), Gaps = 57/782 (7%)
Query: 30 PYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEE--KPT 87
PY+VH S+ + V +L GENY SWS M AL KNK F+DGS+ P +++ +P
Sbjct: 18 PYFVHSSENSSTVSVTPQLTGENYHSWSMKMRRALAMKNKYKFVDGSIPIPDEDDLNRPA 77
Query: 88 ELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKSI 147
W +CN+L+ +W+ +S+ +A V+ + A +W D KD+F + + + Q+ + I
Sbjct: 78 ----WERCNNLVHTWIINSISPSIAHSVVFIEHAIDMWNDLKDRFMRGDRIRVAQLHQEI 133
Query: 148 ATISQGSMSVASYYTKLKALWDELENYRD--------PYTCNHAKAHQEQLQEDRLMQFL 199
A + QG + Y+T+L+ LW+EL+ YR P TC + + EDR++QFL
Sbjct: 134 ANLKQGDHKITDYFTELRGLWEELDQYRPMPQCTCPMPCTCLAMRNAKGFRAEDRVIQFL 193
Query: 200 MGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQ------LSSEPAESFTIAANIQ 253
+G+NE Y+GV S +L+M P+P + + +SLV+Q+E + Q + + E T N
Sbjct: 194 IGLNEEYQGVASQVLLMDPMPPINRVFSLVMQQERKLQYAVVSHVQNTSLEDNTGLVNAV 253
Query: 254 SKASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQQNRG 313
+ + G +C FC++ HT + C K+ G PP RG
Sbjct: 254 NGQKQFGRGRGGTSYQGRGRGNGRGNGNGRFCTFCERTNHTVETCYKKH--GYPPNWGRG 311
Query: 314 ---------SRSKPQSAANMAKNSSMNDGNSLMGFSPEYLQQLAKALSTMN-QNSSSGNS 363
+S NM ++S ND N+ + + + Q L L N + S N
Sbjct: 312 GGNSYTNMVDAEDTESKINMG-STSRNDENAGITLTKDQYQNLMSLLEKNNLETKCSANV 370
Query: 364 DTFANAAGLF------STFISHVNSIFTNSWILDSGATDHMTSHPSLLSKRQPSFSHTVN 417
+N+ LF ++F S N WI+D+GAT H + + + VN
Sbjct: 371 VKGSNSISLFESKSLLASFDSKQND---PGWIVDTGATHHTCYDLNWFTSYSKIETINVN 427
Query: 418 LPNGTSAPITHTGNMVFNQDITLKNVLCVPTFRLNLISASKITKDLNCSVTFFPDSCILQ 477
LPNG+ + G + ++D+++ NVL +P F +NLIS SK+ ++ NC + F D CI+Q
Sbjct: 428 LPNGSVIEACYIGQVKLSKDLSIDNVLYLPKFAVNLISVSKLCREQNCKLEFEADICIIQ 487
Query: 478 DLTTGKMIGWGKQHGGLYYMMQD-----SISPASFQVS----NSPD--LWHSRLGHVSFS 526
+ T + IG K+ GLYY+ D S+S S QV + PD LWH RLGH+ S
Sbjct: 488 EKNTLRKIGLAKEKHGLYYLETDERNKVSVSNISAQVELHQKHVPDGVLWHLRLGHL--S 545
Query: 527 HFKXXXXXXPINKETVSFHNNCSICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHKIP 586
H + + VS H C +C + +Q LPFPISS K F+L+H D+WGP
Sbjct: 546 HDRMICMNKMYSYVPVSPHTACDVCQMCRQKILPFPISSRNAKTAFDLVHFDIWGPFSTT 605
Query: 587 SHSGARFFLTIVDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEF 646
S G ++FLTI+DD TR W+ ++K KSE S + F+ + QF +K+IR+DNG EF
Sbjct: 606 SVHGHKYFLTILDDCTRHVWIVMLKNKSEASYQVKNFVSMVERQFERKIKMIRSDNGPEF 665
Query: 647 QPLQNFLLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILTA 706
L+ F +GI Q +CVYTPQQNG VER+H+HILN++R+L FQS +P FW +L A
Sbjct: 666 M-LREFYDKKGIIHQRSCVYTPQQNGRVERRHQHILNISRALMFQSKLPKNFWSYAVLHA 724
Query: 707 VYLINRLPTPLLSNQSPYEKLYKRPPSLDHLRIFGCQCYATNV-HPKGKFDPRAIRCVFM 765
VYLINR+PT +L+N+S YE LY P L L++FGC YA+ + + KFDP+A +C F+
Sbjct: 725 VYLINRIPTKILNNKSSYEVLYNEVPDLSSLKVFGCLSYASTLPVNRYKFDPKARKCAFL 784
Query: 766 GY 767
G+
Sbjct: 785 GF 786
>IMGA|Medtr4g062320.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 12039092-12042104 H
EGN_Mt090430 20090702
Length = 945
Score = 491 bits (1264), Expect = e-138, Method: Compositional matrix adjust.
Identities = 288/801 (35%), Positives = 424/801 (52%), Gaps = 72/801 (8%)
Query: 31 YYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEKPTELA 90
+YVH S+ P +L+ L+G NY +WS++MI A AKNKL FIDGS+E P +++
Sbjct: 13 FYVHPSEGPNSVLISPPLDGSNYLAWSRSMIRAFGAKNKLKFIDGSMEIPDEDD--LNRN 70
Query: 91 LWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKSIATI 150
W +CN L+ SW+ +SV +A+ ++ + A W+D K++FS+ + I ++ I +
Sbjct: 71 AWERCNHLVQSWIINSVSPQIAQTLVFHENAIDAWSDLKERFSKADIIRIASLRSKINNM 130
Query: 151 SQGSMSVASYYTKLKALWDELENYRD------PYTCNHAKAHQEQLQ--EDRLMQFLMGM 202
QG SV Y+T++K LW+EL ++R P+ C A + + ED+++QFL G+
Sbjct: 131 KQGFKSVLEYFTEMKTLWEELNSHRPMPHCTCPHPCRCAAMREARCYRLEDQVIQFLTGL 190
Query: 203 NESYKGVRSNILMMTPLPNVRQAYSLVIQEETQR-QLSSEPAESFTIAANIQSK------ 255
N+ + V++ +LM+ PLP++ + YSLV+QEE+ L+S E F++ S+
Sbjct: 191 NDQFNVVKTQVLMLDPLPSINKVYSLVVQEESNNLSLTSSINEPFSVVNATNSRKPQGRG 250
Query: 256 ---ASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQQNR 312
+SG + + C C ++ HT+E C K GH P Q +
Sbjct: 251 RGYSSGFRPPRQCTFCGKTNHTVEYCY---------QKHGH----------PNFPEQHSS 291
Query: 313 GSRSKPQSAANMAKNSSMNDGNSLMGFSPEYLQQLAKALSTMN-------------QNSS 359
+ S + S ++ S E QL L +N N
Sbjct: 292 VNASSSNDEVEVQPGSCNTSSSTSSNISQEKYDQLLSLLQQVNLLPAASTPSSSASANHI 351
Query: 360 SGNSDTFANAAGLFSTFISHVNSIFTNSWILDSGATDHMTSHPSLLSKRQPSFSHTVNLP 419
+S + +G+ S F +NS ++ W LDSGA +H+ ++ + VNLP
Sbjct: 352 HTSSVPDSTQSGISSIFSCSINSK-SDVWFLDSGANEHIVNNTHWFTSFHKINPRPVNLP 410
Query: 420 NGTSAPITHTGNMVFNQDITLKNVLCVPTFRLNLISASKITKDLNCSVTFFPDSCILQDL 479
NG+S + + G + F L+NVL P+F LNLIS K+ LNC F C+LQDL
Sbjct: 411 NGSSVLVEYAGTIRFTPQFYLENVLYSPSFTLNLISIFKVCSSLNCYAIFHNKQCLLQDL 470
Query: 480 TTGKMIGWGKQHGGLYYMMQDSISPASFQVSNSPDLWHSRLGHVSFSHFKXXXXXXPINK 539
+ KMIG G+Q G +YY LWH RLGHVS P
Sbjct: 471 HSQKMIGLGEQFG-VYYSYSA--------------LWHFRLGHVSPKRLIHMSQLYP--T 513
Query: 540 ETVSFHNNCSICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHKIPSHSGARFFLTIVD 599
TV H C IC AKQ +LPF S I FELLH D+WGP I S R+FLTI+D
Sbjct: 514 LTVDVHATCDICHFAKQKKLPFSNSISVASIKFELLHFDIWGPLSITSIHNHRYFLTILD 573
Query: 600 DFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEFQPLQNFLLNQGIE 659
D++R W+ L+K KSE S + FI +TQ+N + K +R+DNG EF L +F ++GI
Sbjct: 574 DYSRYVWIVLLKSKSEVSQHVKNFINLIQTQYNITPKTVRSDNGPEFL-LHSFYASKGIV 632
Query: 660 FQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILTAVYLINRLPTPLLS 719
+CV TPQQNG VERKH+HILNV R+L +QS +P+ +W +L A ++INR+ +P L
Sbjct: 633 HHRSCVETPQQNGRVERKHQHILNVGRALLYQSKLPVSYWSYALLHATFIINRVTSPTLH 692
Query: 720 NQSPYEKLYKRPPSLDHLRIFGCQCYATNVHP-KGKFDPRAIRCVFMGYPHGKKGYKLYD 778
N+SPY+ L+ P+ ++FG CY+T +H + K RA + VF+GY G KGY L D
Sbjct: 693 NKSPYQLLHDTIPAEHIFKVFGSLCYSTTLHSHRTKLSARARKSVFLGYTVGFKGYVLLD 752
Query: 779 LSTQKFLISRDVYFQEDTFPF 799
+ T++ ISR V F E P+
Sbjct: 753 IHTREIHISRHVQFYEHILPY 773
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/107 (40%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 922 RRSTRDRQPPAWHQEYFMSAAVNHXXXXXXXXXXXXYPLSHYLSLSQFSLSHRAFLASIT 981
R+S R+ PP Q+Y + + +P+SHY S + S SH AF S+
Sbjct: 838 RKSIRNTHPPTHLQDYVCNTST---ASVLSDNSFVHHPISHYYSYNNLSSSHCAFAMSLD 894
Query: 982 SQVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHKPIG 1028
S EPTTY++A + W AM EL AL+ TW LV LPP KPIG
Sbjct: 895 SHTEPTTYAEASKFDCWNQAMKVELSALENTGTWRLVDLPPNVKPIG 941
>IMGA|AC235009_2.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235009.1 5302-2150 H
EGN_Mt090430 20090702
Length = 1051
Score = 484 bits (1245), Expect = e-136, Method: Compositional matrix adjust.
Identities = 301/816 (36%), Positives = 432/816 (52%), Gaps = 99/816 (12%)
Query: 60 MIHALTAKNKLGFIDGSLEAPSQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAK 119
M AL AKNKL FI+G+++ P E A W +CN LI SW+ +SV +A+ ++
Sbjct: 1 MKRALGAKNKLAFINGTIQQP--EALDLNRAAWERCNHLIHSWIINSVSDSIAQTIVFHD 58
Query: 120 TAYQVWTDFKDQFSQKNAPAIFQIQKSIATISQGSMSVASYYTKLKALWDELENYRDPYT 179
A VW D K++FS+ + I ++ SI + QG +V+ Y+T++++LW+EL ++R
Sbjct: 59 YASDVWEDLKERFSKADRIRISTLRSSINNLKQGGKTVSEYFTEMRSLWEELNSHRPLPN 118
Query: 180 CNHAKAHQEQLQ----------EDRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLV 229
C + HQ + + ED++MQFL+G+N+ + V++ IL+M PLP++ + YSLV
Sbjct: 119 C--SCVHQCRCEASTLAHVYRVEDQIMQFLLGLNDQFSVVKTQILLMDPLPSLNKVYSLV 176
Query: 230 IQEETQRQ-LSSEPAESFTIAANIQSKASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFC 288
IQEE+ + S P E I N K G+ R +C FC
Sbjct: 177 IQEESNHTPILSLPTEESNILVNATDSKKSYGRGKG-----YYGNQKNSSR----HCTFC 227
Query: 289 DKGGHTEDRCRLKNNKGGP-PQQNRGSRSKPQSAANMAKNSSMNDGNSLMGFSP------ 341
++ HT D C LK+ G P P ++ S + + N S N N+ G
Sbjct: 228 NRSNHTIDTCYLKH--GFPHPNKSANSNTLTHGSTNSVTVESGNTSNTQQGNGDSSGYSS 285
Query: 342 ------------EYLQQ-------LAKALSTMNQNSSSGNSDTFANAAGLFSTFIS--HV 380
LQQ ++ ++S NQ ++S + +G+ S F HV
Sbjct: 286 FSISQDRYEHLVSLLQQATLLPTAVSPSVSNSNQLTTSQSIPLATYQSGIHSAFSCSFHV 345
Query: 381 NSIFTNSWILDSGATDHMT---SHPSLLSKRQPSFSHTVNLPNGTSAPITHTGNMVFNQD 437
NSI SWI+DSGA DH+ +H + K +P V LPNGTS + + GN+ F
Sbjct: 346 NSI--PSWIIDSGANDHVCFSKTHFTSFYKIKPVL---VTLPNGTSIYVHYAGNVHFTPY 400
Query: 438 ITLKNVLCVPTFRLNLISASKITKDLNCSVTFFPDSCILQDLTTGKMIGWGKQHGGLYYM 497
+ L +VL P F++NLIS SKI L+CSV F + C++QD+T+ +MIG G + GLY +
Sbjct: 401 LHLTHVLYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYKL 460
Query: 498 ----------MQDSISPASFQVSNS---------------------PD--LWHSRLGHVS 524
+ +S P +V++S P+ LWH RLGH+S
Sbjct: 461 SMHFVNQQLQLHNSFKPLPNKVAHSACNISTSSLSKSSTVFYSSRIPESALWHFRLGHLS 520
Query: 525 FSHFKXXXXXXPINKETVSFHNNCSICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHK 584
P V C IC A+ +LPFP SS F+LLH D+WGP
Sbjct: 521 NQRLSTMSRLYP--SIIVDNKAACDICHFARHKKLPFPHSSSHANSKFQLLHFDIWGPLA 578
Query: 585 IPSHSGARFFLTIVDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGS 644
I G ++FLTIVDD TR W+ L+K K+E + FI + QF+ + KIIRTDNGS
Sbjct: 579 INYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITPKIIRTDNGS 638
Query: 645 EFQPLQNFLLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECIL 704
EF L +F ++GI Q +CV TPQQNG VERKH+HILN+ R+L +QS +PL FW L
Sbjct: 639 EFL-LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFL 697
Query: 705 TAVYLINRLPTPLLSNQSPYEKLYKRPPSLDHLRIFGCQCYATNVHP-KGKFDPRAIRCV 763
AV+LINR+PT +L NQSPY+ LY P + ++FGC CYA+++ + K + RA + V
Sbjct: 698 HAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSHRTKLETRARKSV 757
Query: 764 FMGYPHGKKGYKLYDLSTQKFLISRDVYFQEDTFPF 799
F+GY G KG LYDL T++ ISR V F E P+
Sbjct: 758 FLGYKSGFKGSVLYDLHTREIFISRHVVFHECVLPY 793
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 98/205 (47%), Positives = 137/205 (66%), Gaps = 15/205 (7%)
Query: 922 RRSTRDRQPPAWHQEYFM----SAAVNHXXXXXXXXXXXXYPLSHYLSLSQFSLSHRAFL 977
R S+R++ PP++ +++ SA+VN + +S+++S S SH F+
Sbjct: 855 RHSSRNKTPPSYLKDFICANKSSASVN-----------SLHSISNFVSYHNISNSHSHFI 903
Query: 978 ASITSQVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIKY 1037
S+ + EP +Y++A + W+ AM EL AL+ TW ++ LP KPIGCRW+YK+K+
Sbjct: 904 LSLHAHTEPKSYTEANKFECWRQAMQVELTALENTGTWKIIDLPSNAKPIGCRWIYKVKH 963
Query: 1038 HSDGTIERYKARLVAKGYTQVEGLDYKETFSPTAKMTTLRCLLTIAAARNWFTHQLDVQN 1097
H+DGTIERYKARLVAKGY QVEGLDY +T+SP AK TT+R +L +A+ NW HQLDV N
Sbjct: 964 HADGTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRLVLALASLNNWHLHQLDVNN 1023
Query: 1098 AFLHGNLQEIVYMELPPGLCRQGEN 1122
AFLHG+LQE VYM++PPG+ N
Sbjct: 1024 AFLHGDLQEDVYMDIPPGVSTNKPN 1048
>IMGA|AC235005_1.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold AC235005.1 3152-790 H
EGN_Mt090430 20090702
Length = 772
Score = 456 bits (1173), Expect = e-128, Method: Compositional matrix adjust.
Identities = 286/784 (36%), Positives = 414/784 (52%), Gaps = 99/784 (12%)
Query: 60 MIHALTAKNKLGFIDGSLEAPSQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAK 119
M AL AKNKL FI+G+++ P E A W +CN LI SW+ +SV +A+ ++
Sbjct: 1 MKRALGAKNKLAFINGTIQQP--EALDLNRAAWERCNHLIHSWIINSVSDSIAQTIVFHD 58
Query: 120 TAYQVWTDFKDQFSQKNAPAIFQIQKSIATISQGSMSVASYYTKLKALWDELENYRDPYT 179
A VW D K++FS+ + I ++ SI + QG +V+ Y+T++++LW+EL ++R
Sbjct: 59 YASDVWEDLKERFSKADRIRISTLRSSINNLKQGGKTVSEYFTEMRSLWEELNSHRPLPN 118
Query: 180 CNHAKAHQEQLQ----------EDRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLV 229
C + HQ + + ED++MQFL+G+N+ + V++ IL+M PLP++ + YSLV
Sbjct: 119 C--SCVHQCRCEASTLAHVYRVEDQIMQFLLGLNDQFSVVKTQILLMDPLPSLNKVYSLV 176
Query: 230 IQEETQRQ-LSSEPAESFTIAANIQSKASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFC 288
IQEE+ + S P E I N K G+ R +C FC
Sbjct: 177 IQEESNHTPILSLPTEESNILVNATDSKKSYGRGKG-----YYGNQKNSSR----HCTFC 227
Query: 289 DKGGHTEDRCRLKNNKGGP-PQQNRGSRSKPQSAANMAKNSSMNDGNSLMGFSP------ 341
++ HT D C LK+ G P P ++ S + + N S N N+ G
Sbjct: 228 NRSNHTIDTCYLKH--GFPHPNKSANSNTLTHGSTNSVTVESGNTSNTQQGNGDSSGYSS 285
Query: 342 ------------EYLQQ-------LAKALSTMNQNSSSGNSDTFANAAGLFSTFIS--HV 380
LQQ ++ ++S NQ ++S + +G+ S F HV
Sbjct: 286 FSISQDRYEHLVSLLQQATLLPTAVSPSVSNSNQLTTSQSIPLATYQSGIHSAFSCSFHV 345
Query: 381 NSIFTNSWILDSGATDHMT---SHPSLLSKRQPSFSHTVNLPNGTSAPITHTGNMVFNQD 437
NSI SWI+DSGA DH+ +H + K +P V LPNGTS + + GN+ F
Sbjct: 346 NSI--PSWIIDSGANDHVCFSKTHFTSFYKIKPVL---VTLPNGTSIYVHYAGNVHFTPY 400
Query: 438 ITLKNVLCVPTFRLNLISASKITKDLNCSVTFFPDSCILQDLTTGKMIGWGKQHGGLYYM 497
+ L +VL P F++NLIS SKI L+CSV F + C++QD+T+ +MIG G + GLY +
Sbjct: 401 LHLTHVLYSPEFKVNLISVSKICDSLSCSVNFVSNKCVIQDVTSQRMIGLGDKSDGLYKL 460
Query: 498 ----------MQDSISPASFQVSNS---------------------PD--LWHSRLGHVS 524
+ +S P +V++S P+ LWH RLGH+S
Sbjct: 461 SMHFVNQQLQLHNSFKPLPNKVAHSACNISTSSLSKSSTVFYSSRIPESALWHFRLGHLS 520
Query: 525 FSHFKXXXXXXPINKETVSFHNNCSICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHK 584
P V C IC A+ +LPFP SS F+LLH D+WGP
Sbjct: 521 NQRLSTMSRLYP--SIIVDNKAACDICHFARHKKLPFPHSSSHANSKFQLLHFDIWGPLA 578
Query: 585 IPSHSGARFFLTIVDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGS 644
I G ++FLTIVDD TR W+ L+K K+E + FI + QF+ + KIIRTDNGS
Sbjct: 579 INYVHGHKYFLTIVDDHTRFLWIILLKSKAEVPIHIKNFIALIENQFHITPKIIRTDNGS 638
Query: 645 EFQPLQNFLLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECIL 704
EF L +F ++GI Q +CV TPQQNG VERKH+HILN+ R+L +QS +PL FW L
Sbjct: 639 EFL-LHDFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFL 697
Query: 705 TAVYLINRLPTPLLSNQSPYEKLYKRPPSLDHLRIFGCQCYATNVHP-KGKFDPRAIRCV 763
AV+LINR+PT +L NQSPY+ LY P + ++FGC CYA+++ + K + RA + V
Sbjct: 698 HAVFLINRVPTLVLQNQSPYQLLYDSSPDVTTFKVFGCLCYASSLQSHRTKLETRARKSV 757
Query: 764 FMGY 767
F+GY
Sbjct: 758 FLGY 761
>IMGA|Medtr1g140330.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 31006465-31009370 H
EGN_Mt090430 20090702
Length = 883
Score = 441 bits (1133), Expect = e-123, Method: Compositional matrix adjust.
Identities = 279/828 (33%), Positives = 403/828 (48%), Gaps = 95/828 (11%)
Query: 27 PSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEKP 86
P + YYVH SD P + + L+ NY SW+++M AL AKNK F+DGS+ P+ +
Sbjct: 26 PGNVYYVHASDGPSSVAITPVLSHSNYHSWARSMRRALGAKNKFDFVDGSIPVPTDFDP- 84
Query: 87 TELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKS 146
WN+CN L+ SW+ +SVE +A+ ++ K A + +
Sbjct: 85 -NFKAWNRCNMLVHSWIMNSVEDSIAQSIVFLKNAIDLEA---------------YLPTP 128
Query: 147 IATISQGSMSVASYYTKLKALWDELENYRDPYTCNHAKAHQEQLQEDRLMQFLMGMNESY 206
+ M + HQ ++ R ++FL G+N+S+
Sbjct: 129 VCACPHRCMCITGVMNA---------------------KHQHEIT--RSIRFLTGLNDSF 165
Query: 207 KGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIAANIQSKASGIKNNKTCD 266
VRS IL+M PLP + + +S+V+Q E Q ++S P + TI N K+ G
Sbjct: 166 DLVRSQILLMNPLPTINKIFSMVMQHERQFKISI-PVDDSTILVNSAGKSQG-------- 216
Query: 267 HCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQQNRGSRSKPQSAANMAK 326
R K C FC + GHT D C K+ R + +
Sbjct: 217 ---RGRGNGNSNSNGKRSCSFCGRDGHTIDICYRKH-----------EREDLDDSKSCKG 262
Query: 327 NSSMNDGNSLMGFSPEYLQQLAKALSTMNQNSSSGNSDTFANAAGLFSTFISH-VNSIFT 385
NS+ G + E +QL L + +SS N N T IS+ +N
Sbjct: 263 NSNTEPS---FGITKEQYEQLVTLLQSQQASSSKVNLSHVTNHVTSGITRISYTMNHSSF 319
Query: 386 NSWILDSGATDHMTSHPSLLSKRQPSFSHTVNLPNGTSAPITHTGNMVFNQDITLKNVLC 445
+WI+DSGA+DH+ S P + LPNG A +G + F+ + +NVL
Sbjct: 320 GTWIVDSGASDHICSSIKNFDSYAPIIPVHIKLPNGNMAIAKFSGTVTFSPGLIARNVLY 379
Query: 446 VPTFRLNLISASKITKDLNCSVTFFPDSCILQDLTTGKMIGWGKQHGGLYYMMQDSISPA 505
V F+LNL+S K+ D NC VTF D C +QD + KM G G+ GLY++ S +
Sbjct: 380 VAEFKLNLLSVPKLCMDNNCIVTFDNDKCFIQDKSNLKMTGLGELIEGLYFLNLGSQVFS 439
Query: 506 SFQVSNSP-----------------DLWHSRLGHVSFSHFKXXXXXXPINKETVSFHNNC 548
F ++ P LWH RLGH+S P K V ++ C
Sbjct: 440 QF--NHQPVIASSQASSSTTFLPQEALWHFRLGHLSNDRLLRMQQHFPCIK--VDSNSVC 495
Query: 549 SICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHKIPSHSGARFFLTIVDDFTRCTWVF 608
IC ++ +LPF +S +EL+H D+WGP S G ++F+T +DD++R TW+
Sbjct: 496 DICHYSRHKKLPFKLSMNKASHCYELIHFDIWGPISTHSIHGHKYFITALDDYSRFTWIM 555
Query: 609 LMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEFQPLQNFLLNQGIEFQNTCVYTP 668
L K KSE S + FI + QFN VK +RTDNG EF + +F ++GIE Q +CV TP
Sbjct: 556 LCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEFL-MPDFYSSKGIEHQTSCVETP 614
Query: 669 QQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILTAVYLINRLPTPLLSNQSPYEKLY 728
QQNG VERKH+HILNVAR+L FQS +P FW +L A+Y+INR+PTPLL N+SPY Y
Sbjct: 615 QQNGRVERKHQHILNVARALLFQSKLPKVFWSYSVLHAIYIINRIPTPLLQNKSPYFLRY 674
Query: 729 KRPPSLDHLRIFGCQCYATNVHP-KGKFDPRAIRCVFMGYPHGKKGYKLYDLSTQKFLIS 787
P L++ ++FGC YA+ +H + KFD RA +CVF+GY G KG LYDL+ + S
Sbjct: 675 GHDPDLNNFKVFGCLSYASTLHNHRTKFDSRAQKCVFLGYKQGIKGAILYDLNHKTIFAS 734
Query: 788 RDVYFQEDTFPFAXXXXXXXXXXXXXXVAHNFPLLPIFPEAESKISQP 835
R+V + E P++ N P++P+ + S P
Sbjct: 735 RNVTYHEHILPYSNSKQYFQWQYHS-----NHPIIPVTEQTSSNFELP 777
>IMGA|Medtr4g157510.1 Retrotransposon gag protein; Polynucleotidyl
transferase, Ribonuclease H fold
chr04_pseudomolecule_IMGAG_V3 39272474-39269703 H
EGN_Mt090430 20090702
Length = 847
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 270/767 (35%), Positives = 397/767 (51%), Gaps = 96/767 (12%)
Query: 66 AKNKLGFIDGSLEAPSQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVW 125
AKNKL FI+G+L P ++ W +CN L+ SWL +SV +A+ ++ A+ VW
Sbjct: 31 AKNKLSFINGTLPVPDTDD--LNHNAWERCNHLVHSWLINSVSDSIAQTIVFHDNAFDVW 88
Query: 126 TDFKDQFSQKNAPAIFQIQKSIATISQGSMSVASYYTKLKALWDELENYRD------PY- 178
D K++FS+ + I +++ S+ T+ QG+ SV Y+T++KALW+EL ++R P+
Sbjct: 89 EDLKERFSKVDRIRIARLRSSLNTLRQGAKSVLDYFTEMKALWEELHSHRPLPNCHCPFQ 148
Query: 179 -TCNHAKAHQEQLQEDRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQ 237
C+ + ED+++QFL G+NE + V++ +L+M PLP + + +SLVIQ+E+
Sbjct: 149 CKCDAVTVPKSYRVEDQIIQFLTGLNEQFSVVKTQVLLMDPLPTLNKVFSLVIQKESNN- 207
Query: 238 LSSEPAESFTIAANIQSKASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDR 297
+S PA N++ + I D G +C FC+K HT D
Sbjct: 208 -ASVPA-----MVNLEDSSVSIN---AYDERKSQGRGKGAYNKPTRHCTFCNKTNHTVDF 258
Query: 298 CRLKNNKGGPPQQNRGSRSKPQSAANMAKNSSMN-DGNS-LMGFSPEYLQQLAKALSTMN 355
C K G P N KP S AN + + DG+S + G S + ++QL L N
Sbjct: 259 CY---QKHGFPNAN-----KPNSQANASSSDVAEVDGSSGVSGLSQDKMEQLVALLQQAN 310
Query: 356 -------------------QNSS--SGNSDTFANAAGLFSTFISHVNSIFTNSWILDSGA 394
Q SS + +S +AG+ ++ + +S+ + W++DSGA
Sbjct: 311 LIPSSSASSGSVTNHIAAPQVSSCYTTSSSLTPTSAGIINS--TTCSSLSNSYWLVDSGA 368
Query: 395 TDHMTSHPSLLSKRQPSFSHTVNLPNGTSAPITHTGNMVFNQDITLKNVLCVPTFRLNLI 454
+H+ +L + V LP+G+ +TH G + F+ L NVL +FRLNL+
Sbjct: 369 NEHICRDLNLFTSYHAISPSIVTLPDGSIVTVTHAGYINFSPQFYLTNVLYSSSFRLNLM 428
Query: 455 SASKITKDLNCSVTFFPDSCILQDLTTGKMIGWGKQHGGLYYMMQDSISPASFQVSNSPD 514
S K+ + L+C+ F P+ CI+QD T+ KMIG Q GLY
Sbjct: 429 SVHKVCESLSCTFQFLPNQCIIQDSTSLKMIGLANQQDGLY------------------- 469
Query: 515 LWHSRLGHVSFSHFKXXXXXXPINKETVSFHNN--CSICPLAKQTRLPFPISSITTKIPF 572
+LGH+S + VS + N C IC AKQ LPF IS+ F
Sbjct: 470 ----KLGHLSHQRMNMMSS---LYSNIVSDNKNSVCDICHFAKQKHLPFSISTSHATSNF 522
Query: 573 ELLHCDVWGPHKIPSHSGARFFLTIVDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFN 632
ELLH D+WGP I S G ++FLTIVDD +R W+ +K KS S + FI+ +TQF+
Sbjct: 523 ELLHLDIWGPLSISSIHGHKYFLTIVDDHSRFLWIISLKTKSGVSHHVKSFIKMVQTQFH 582
Query: 633 TSVKIIRTDNGSEFQPLQNFLLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQS 692
+ K IR+DNG EF L +F + GI Q +CV TPQQNG VERKH HILNV R+L +QS
Sbjct: 583 VTPKCIRSDNGPEFLIL-SFYESLGILHQKSCVETPQQNGRVERKHHHILNVGRALLYQS 641
Query: 693 HVPLKFWGECILTAVYLINRLPTPLLSNQSPYEKLYKRPPSLDHLRIFGCQCYATNVHPK 752
+P +W +L AV+LINR PTPLL QSPY L+ + P +D K
Sbjct: 642 KLPASYWSYALLHAVFLINRKPTPLLEGQSPYYALHHKFPDIDTF--------------K 687
Query: 753 GKFDPRAIRCVFMGYPHGKKGYKLYDLSTQKFLISRDVYFQEDTFPF 799
+ RA + VF+GY G KG+ L D+ +++ +SR V F E P+
Sbjct: 688 NQASTRARKTVFLGYKSGYKGFILLDIHSREIFVSRHVVFHEYFLPY 734
>IMGA|Medtr2g038510.1 Polynucleotidyl transferase, Ribonuclease H
fold chr02_pseudomolecule_IMGAG_V3 10761249-10763836 E
EGN_Mt090430 20090702
Length = 772
Score = 421 bits (1083), Expect = e-117, Method: Compositional matrix adjust.
Identities = 265/793 (33%), Positives = 413/793 (52%), Gaps = 99/793 (12%)
Query: 31 YYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEKPTELA 90
YYVH S+ P + V L G NY +W+++M AL KNK FIDGS+ P ++
Sbjct: 19 YYVHPSEGPNSVTVTPLLTGPNYLAWNRSMKRALGTKNKFVFIDGSVPIPPMDD--LNRT 76
Query: 91 LWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKSIATI 150
W +CN+LILSW+ +SV +A+ ++ + A VW + +++FS+ + + ++ SI +
Sbjct: 77 AWERCNNLILSWIINSVSPQIAQTIVFHEYAIDVWIELQERFSKVDRIRVASLRSSINNL 136
Query: 151 SQGSMSVASYYTKLKALWDELENYRD--------PYTCNHAKAHQEQLQEDRLMQFLMGM 202
QG SV Y+T +K+LW+EL ++R P C +A ++ ED+++QFL G+
Sbjct: 137 KQGDKSVLDYFTSIKSLWEELNSHRPMPMCTCPYPCRCESMRAARDFRMEDQVIQFLTGL 196
Query: 203 NESYKGVRSNILMMTPLPNVRQAYSLVIQEETQ----RQLSSEPAESFTIAAN------I 252
N+S+ V++ +L++ PLP++ + YS+VIQEE+ L+S S + A+ +
Sbjct: 197 NDSFSVVKTQVLLIDPLPSINKVYSMVIQEESNIIPPTSLASNEDSSILVNASDARKPFL 256
Query: 253 QSKASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKN---NKGGPPQ 309
+ K+SG +K YC FC + HT + C LK+ N P
Sbjct: 257 RGKSSGTSQSKNNSR----------------YCTFCRRNNHTVEYCYLKHDFPNANKPTA 300
Query: 310 QNRGSRSKPQSAANMAKNSSMNDGNSLMGFSPEYLQQLAKAL--STMNQNSSSGNSDTFA 367
+ S + A + +S +S G + E L L S++ +++ N +
Sbjct: 301 SSNAVTS--EHAVDSHTSSEGTSSSSQTGLTQEQYVHLVSLLQQSSLVPSATPPNPASTN 358
Query: 368 NAAGLFST---FISHVNSIFTNS-------WILDSGATDHMTSHPSLLSKRQPSFSHTVN 417
+ A F + F S +N+IF+ S W++DSGA +H+ S L VN
Sbjct: 359 HVATSFPSSIDFTSGINTIFSCSLHVPSDHWLIDSGANEHICSSLHLFHSYYRIKPICVN 418
Query: 418 LPNGTSAPITHTGNMVFNQDITLKNVLCVPTFRLNLISASKITKDLNCSVTFFPDSCILQ 477
LPNG+S + + G +VF+ + +VL P+F++ LIS SKI + L V F ++ ++Q
Sbjct: 419 LPNGSSVIVQYAGTVVFSPHFHITHVLYSPSFKVYLISVSKICQSLPYHVHFLLNTYVIQ 478
Query: 478 DLTTGKMIGWGKQHGGLY------------YMMQDSISPAS------------FQVSNSP 513
D+ T KMIG G GLY + + ++SP + S
Sbjct: 479 DVKTQKMIGLGNLCDGLYRLHPFAPASPQAHFISSAVSPTNKMSCNSVSSNNNVSSIPSN 538
Query: 514 DLWHSRLGHVSFSHFKXXXXXXPINKETVSFHNNCSICPLAKQTRLPFPISSITTKIPFE 573
+WH RLGH+S N+ H+ S + + + I+S FE
Sbjct: 539 AIWHFRLGHLS-------------NQRLSMMHSLYSSITIDNKA---YSIASSK----FE 578
Query: 574 LLHCDVWGPHKIPSHSGARFFLTIVDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNT 633
LLH D+WGP + S G ++FLTIVDDF+R WV L+K KSE S+ + F+ T +
Sbjct: 579 LLHFDIWGPLSVTSVHGHKYFLTIVDDFSRFLWVILLKNKSEVSNHVKNFVVLIHTHYQI 638
Query: 634 SVKIIRTDNGSEFQPLQNFLLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSH 693
+ K IR+DNG EF + F ++GI Q +CV TPQQNG VERKH+HILNVAR+L FQS
Sbjct: 639 TPKYIRSDNGPEFL-IPEFYASKGIIHQKSCVETPQQNGRVERKHQHILNVARALLFQSK 697
Query: 694 VPLKFWGECILTAVYLINRLPTPLLSNQSPYEKLYKRPPSLDHLRIFGCQCYA-TNVHPK 752
+P FW ++ AV+LIN++PTPL +SPY+ LY P ++ ++FGC C+A T + +
Sbjct: 698 LPNFFWSYAVIHAVFLINKVPTPLFKQKSPYQLLYDSLPDINSFKVFGCLCFASTLLAQR 757
Query: 753 GKFDPRAIRCVFM 765
K RA + +F
Sbjct: 758 SKLQSRARKSIFF 770
>IMGA|Medtr7g045790.1 Polynucleotidyl transferase, Ribonuclease H fold
chr07_pseudomolecule_IMGAG_V3 11036769-11039177 H
EGN_Mt090430 20090702
Length = 710
Score = 395 bits (1016), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/578 (39%), Positives = 311/578 (53%), Gaps = 107/578 (18%)
Query: 921 LRRSTRDRQPPAWHQEYFM----SAAVNHXXXXXXXXXXXXYPLSHYLSLSQFSLSHRAF 976
+R S+R++ P++ ++Y S +VN+ Y +S+Y+S S H F
Sbjct: 234 IRCSSRNKISPSYLKDYICPHKSSTSVNNL-----------YSISNYVSYHNISNPHSHF 282
Query: 977 LASITSQVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIK 1036
+ S+ + EP TY++A + W+ AM EL AL+ TW ++ PP KPIGCRW+YKIK
Sbjct: 283 ILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIK 342
Query: 1037 YHSDGTIERYKARLVAKGYTQVEGLDYKETFSPTAKMTTLRCLLTIAAARNWFTHQLDVQ 1096
+++D TIERYKARLVAKGY QVEGLDY +T+SP AK TT+R A+R W
Sbjct: 343 HNADDTIERYKARLVAKGYNQVEGLDYFDTYSPVAKHTTIRL-----ASRKW-------- 389
Query: 1097 NAFLHGNLQEIVYMELPPGLCRQGENMVCRLNKSLYGLKQASRNWFSTFSEALASAGFAQ 1156
Y +L L G + Q
Sbjct: 390 ------------YEKLASLLVNHG---------------------------------YKQ 404
Query: 1157 SKADYSLFTKQQDTSFTAVLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLG 1216
+ AD+SLF K T FTA+L+YVDDI++ GNS+ E YFLG
Sbjct: 405 ASADHSLFIKHSTTQFTALLVYVDDIILAGNSLDEFTFIKNILHNSFKIKDLGQLKYFLG 464
Query: 1217 IEFSHSKKGIFMSQRKYALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXX 1276
+E +HSK GI + QRKY LD+L D+G S+P + P + ++KL D D
Sbjct: 465 LEVAHSKLGISLCQRKYGLDLLSDTGLLDSKPVATPSDPSIKLYHDDSPLYTDIPAYRRL 524
Query: 1277 XXXXXXXTVTRPDIVYSVRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENNLK 1336
TRPDI + + LSQ++ +P + H+ AA+RVL+Y+K+ PG+GL PR +
Sbjct: 525 VGRLLYLNATRPDITFITQQLSQFLSKPTQTHYNAALRVLRYLKTCPGKGLHFPRSSLPY 584
Query: 1337 LSAFCDSDWAGCRTTRRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLEL 1396
+ + D+DWAGCR TRRSISG C FLG SLISW++KKQ VSRSS+EAEYR++
Sbjct: 585 IQGYSDADWAGCRDTRRSISGQCFFLGDSLISWRTKKQLTVSRSSSEAEYRAL------- 637
Query: 1397 TWIHYLLRDLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVK 1456
G A+ +NPVFHERTKH+EIDCHIVREKL +G++K
Sbjct: 638 ---------------GAAT------------SNPVFHERTKHLEIDCHIVREKLAAGIMK 670
Query: 1457 PQYVPTRLQLADIFTKALGREQFQFLRSKLGIQNIHSP 1494
+ ++ QLAD FTK++ + F L KLG+ +IH P
Sbjct: 671 LLPISSKNQLADCFTKSILPQPFNSLLFKLGLVDIHKP 708
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 91/173 (52%), Positives = 118/173 (68%), Gaps = 2/173 (1%)
Query: 628 KTQFNTSVKIIRTDNGSEFQPLQNFLLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARS 687
+ QF+ + KIIRTDNGSEF L F ++GI Q +CV TPQQNG VERKH+HILN+ R+
Sbjct: 3 ENQFHVTPKIIRTDNGSEFL-LHEFYASKGILHQRSCVETPQQNGRVERKHQHILNIGRA 61
Query: 688 LFFQSHVPLKFWGECILTAVYLINRLPTPLLSNQSPYEKLYKRPPSLDHLRIFGCQCYAT 747
L +QS +PL FW L AV+LINR+PTP+L N SPY LY PP + ++FGC CYA+
Sbjct: 62 LLYQSKLPLSFWSYAFLHAVFLINRIPTPVLHNFSPYHLLYDSPPDITTFKVFGCLCYAS 121
Query: 748 NVHP-KGKFDPRAIRCVFMGYPHGKKGYKLYDLSTQKFLISRDVYFQEDTFPF 799
++ + K + RA + VF+GY G KGY LYDL T++ ISR V F E P+
Sbjct: 122 SLQSHRTKLETRARKSVFLGYKLGFKGYVLYDLHTREIFISRHVVFHECVLPY 174
>IMGA|Medtr1g013560.1 Polynucleotidyl transferase, Ribonuclease H
fold chr01_pseudomolecule_IMGAG_V3 2535883-2538036 H
EGN_Mt090430 20090702
Length = 680
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 250/744 (33%), Positives = 377/744 (50%), Gaps = 113/744 (15%)
Query: 26 DPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEK 85
D ++VH S+ P + + K NG NY +WS+ + +L KNKLGFI+GS+ P +++
Sbjct: 10 DTESVFFVHPSEGPNSLSITPKFNGSNYIAWSRTVERSLGTKNKLGFINGSIPMPDEDD- 68
Query: 86 PTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQK 145
W +CN L+ SWL +SV +A+ ++ +A +VW D K++FS+ + I ++
Sbjct: 69 -LNRTAWERCNHLVQSWLINSVSESIAQTIVFCDSALEVWLDLKERFSKIDRIRIANLRS 127
Query: 146 SIATISQGSMSVASYYTKLKALWDELENYR--------DPYTCNHAKAHQEQLQEDRLMQ 197
+I + QGS V Y+T++K+LW+EL ++R P C +K + ED++MQ
Sbjct: 128 NINNLKQGSKFVLDYFTEIKSLWEELSSHRPIPNCSCIHPCRCAASKVAKIHRNEDQIMQ 187
Query: 198 FLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIAANIQSKAS 257
FL G+N+ + VR+ +L++ PLP++ + YSLV+QEE+ +S + S + +IQ A+
Sbjct: 188 FLTGLNDQFSVVRTQVLLLDPLPSMNKVYSLVVQEESNH--ASITSLSVSTDTSIQINAT 245
Query: 258 GIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQQNRGSRSK 317
N+ +S ++ + R C FC++ HT D C LK+ G P N K
Sbjct: 246 ---ENRKPQGRGKSFYSNKPTR----LCTFCNRTNHTVDFCYLKH---GYPNVN-----K 290
Query: 318 PQSAANMAKNSSMNDG------------NSLMGFSPEYLQQLAKALSTMNQNSSSGNSDT 365
P S+ N A +G + GFS E L QL L N S+ +
Sbjct: 291 PSSSVNAASQEDSENGTISSSGLGTPASSPSAGFSQEQLAQLVSMLQQSNLVVSAPSPSQ 350
Query: 366 FAN---AAGLFST------FISHVNSIFTNS--WILDSGATDHMTSHPSLLS---KRQPS 411
+ A+ ST ++ V+S+ + W++DSGA +H+ + S + +P
Sbjct: 351 VTSNHIASASISTPDSSKGILASVSSLTSKPPFWLIDSGANEHICCDIASFSSFYRIKPV 410
Query: 412 FSHTVNLPNGTSAPITHTGNMVFNQDITLKNVLCVPTFRLNLISASKITKDLNCSVTFFP 471
+ V+LPNG S GN+ FN L +VL P F LNLIS +K L C F
Sbjct: 411 Y---VSLPNGNSVLAHFAGNVFFNSKFHLSHVLYSPHFTLNLISVAKCCDSLTCFFHFSL 467
Query: 472 DSCILQDLTTGKMIGWGKQHGGLYYMMQDSISPASFQVSN-SPDLWHSRLGHVSFSHFKX 530
+ C++QD + KMIG KQ GLY S ++F+ S SP
Sbjct: 468 EKCLIQDQQSLKMIGLAKQQDGLYKFY-PSCKSSNFEFSALSP----------------- 509
Query: 531 XXXXXPINKETVSFHNNCSICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHKIPSHSG 590
++C++ ++ P ++S+ G
Sbjct: 510 ---------------SSCNVVSISNYIWGPLSVASV----------------------HG 532
Query: 591 ARFFLTIVDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEFQPLQ 650
R+FLTI+DD TR WV L+K K+E S + FI + F+T+ K IRTDNG EF L
Sbjct: 533 HRYFLTILDDHTRFLWVILLKTKAEVSSHVKNFITMIQNHFHTTPKFIRTDNGPEFM-LP 591
Query: 651 NFLLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILTAVYLI 710
+F + GI Q +CV TPQQNG VERKH+HILNV R+L +QS +P FW I AV+LI
Sbjct: 592 SFYASHGIIHQKSCVETPQQNGRVERKHQHILNVGRALLYQSKLPPSFWSYAIHHAVFLI 651
Query: 711 NRLPTPLLSNQSPYEKLYKRPPSL 734
NR+PTPLL NQSPY L+ + P +
Sbjct: 652 NRVPTPLLHNQSPYFLLHHKLPDI 675
>IMGA|CU179634_24.1 Polynucleotidyl transferase, Ribonuclease H fold
CU179634.6 87152-89450 H EGN_Mt090430 20090702
Length = 688
Score = 357 bits (915), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 246/420 (58%), Gaps = 5/420 (1%)
Query: 921 LRRSTRDRQPPAWHQEYFM---SAAVNHXX--XXXXXXXXXXYPLSHYLSLSQFSLSHRA 975
LRRS R + P + +Y S+ V++ + L HY+S FS ++
Sbjct: 266 LRRSQRLHKTPTYLTDYVHNVPSSTVSNSQPPQPHSLPLNALFTLKHYVSPDVFSFDSQS 325
Query: 976 FLASITSQVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKI 1035
F+ +I+ EP +Y +A P WQ AM E AL NNTW+L LP K +GCRWVYK+
Sbjct: 326 FIMNISHDCEPNSYEEASMDPAWQKAMTQEFLALHDNNTWTLTNLPKDKKSVGCRWVYKV 385
Query: 1036 KYHSDGTIERYKARLVAKGYTQVEGLDYKETFSPTAKMTTLRCLLTIAAARNWFTHQLDV 1095
K+ +DG++ERYKARLV KGYTQ G+DY ETFSP KMTT+R L+ AA + W HQLDV
Sbjct: 386 KHKADGSVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRTLIVAAAKKQWNIHQLDV 445
Query: 1096 QNAFLHGNLQEIVYMELPPGLCRQGENMVCRLNKSLYGLKQASRNWFSTFSEALASAGFA 1155
NAFLHG+L E VYM++PPGL +++VC+LNKSLYGLKQASR W+ +EAL + G+
Sbjct: 446 NNAFLHGDLHEEVYMDIPPGLATPHKDLVCKLNKSLYGLKQASRQWYEKLTEALHTRGYE 505
Query: 1156 QSKADYSLFTKQQDTSFTAVLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFL 1215
S DYSLF K++ S + +YVDDIL+TG EI YFL
Sbjct: 506 HSPHDYSLFYKKRGASNVFLGVYVDDILLTGTDTNEIDELKRFLDNQFKIKDLGRLHYFL 565
Query: 1216 GIEFSHSKKGIFMSQRKYALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXX 1275
G+E + GI +SQRK+ LD+L++ P S P++ N+KL +G+ L DPT
Sbjct: 566 GLEVLYKDDGILVSQRKFVLDLLKEFNCDHMAPLSSPLDPNIKLRSHEGKVLDDPTYYRK 625
Query: 1276 XXXXXXXXTVTRPDIVYSVRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENNL 1335
T TR D+ Y V+ LSQYM +PR+PH AA +L+Y+K P G+ + N
Sbjct: 626 LIGKLNFLTHTRLDLAYGVQLLSQYMQDPREPHLHAAFHMLRYLKKDPTLGVFMSSAANF 685
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/250 (42%), Positives = 140/250 (56%), Gaps = 50/250 (20%)
Query: 553 LAKQTRLPFPISSITTKIPFELLHCDVWGPHKIPSHSGARFFLTIVDDFTRCTWVFLMKQ 612
+A+Q+RLPFP + TT FELLH D+WGP++ +H ++F+T+VDDF++ TW L+
Sbjct: 1 MARQSRLPFPPKTHTTTGIFELLHVDIWGPYQTTTHDNFKYFITLVDDFSKSTWTQLLSC 60
Query: 613 KSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEFQPLQN--FLLNQGIEFQNTCVYTPQQ 670
KS +L FI + QF+T+VK IR+DNG EF + F ++GI Q +C YTPQQ
Sbjct: 61 KSNAFHVLKAFILMVENQFSTTVKTIRSDNGLEFTSNETTLFFQSKGIIHQKSCPYTPQQ 120
Query: 671 NGVVERKHRHILNVARSLFFQSHVPLKFWGECILTAVYLINRLPTPLLSNQSPYEKLYKR 730
NGVVERKH+ IL AR+L FQS +P+K+W E T
Sbjct: 121 NGVVERKHKFILETARALLFQSKLPVKYWSEFHRT------------------------- 155
Query: 731 PPSLDHLRIFGCQCYATNVHPKGKFDPRAIRCVFMGYPHGKKGYKLYDLSTQKFLISRDV 790
KFDP+ I VF+GYP+ KGYK+ +LSTQK +SRDV
Sbjct: 156 -----------------------KFDPKTIPHVFVGYPYATKGYKVLNLSTQKIHVSRDV 192
Query: 791 YFQEDTFPFA 800
F E FPFA
Sbjct: 193 IFHETIFPFA 202
>IMGA|Medtr5g086550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33218578-33217607 H EGN_Mt090430 20090702
Length = 309
Score = 320 bits (819), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 157/322 (48%), Positives = 201/322 (62%), Gaps = 14/322 (4%)
Query: 1174 AVLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFSHSKKGIFMSQRKY 1233
AVLIYVDD+++ GN I YFLG+E + G+FM QRKY
Sbjct: 2 AVLIYVDDLVIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFMCQRKY 61
Query: 1234 ALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXXXXXXXXXTVTRPDIVYS 1293
LDIL++ +P +FPMEQN KL L G DP+ T+ P+I YS
Sbjct: 62 TLDILDECKMLDCKPSTFPMEQNQKLVLDKGPTCSDPSRYRRLISRLIYLTIMHPEITYS 121
Query: 1294 VRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENNLKLSAFCDSDWAGCRTTRR 1353
V L+ +RVL+Y+KS+PGQG++LP+EN+L+L A+CDSDWA C TRR
Sbjct: 122 VHILT--------------MRVLRYLKSSPGQGIILPKENDLQLVAYCDSDWASCPLTRR 167
Query: 1354 SISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIHYLLRDLKVSQTGP 1413
S SGY + LGS+ ISWK+KKQ+ VS+SS+EAEYR+M E+ W+ LL L+V P
Sbjct: 168 STSGYLMKLGSAPISWKTKKQSTVSKSSSEAEYRAMGQAVSEVIWLRSLLSSLQVHYDSP 227
Query: 1414 ASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKPQYVPTRLQLADIFTKA 1473
L CDNQAA+H+AANPV+HERTKHIE+DCH +R LQ G + YVPT+ Q ADIFTKA
Sbjct: 228 TVLLCDNQAAMHLAANPVYHERTKHIEVDCHFIRTHLQEGTISTSYVPTKKQQADIFTKA 287
Query: 1474 LGREQFQFLRSKLGIQNIHSPT 1495
LG +QFQ L KLG+ H+PT
Sbjct: 288 LGAKQFQELTFKLGVHYPHTPT 309
>IMGA|Medtr8g044860.1 Zinc finger, C2H2-type; Polynucleotidyl
transferase, Ribonuclease H fold
chr08_pseudomolecule_IMGAG_V3 10143838-10146452 H
EGN_Mt090430 20090702
Length = 753
Score = 297 bits (760), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 236/803 (29%), Positives = 359/803 (44%), Gaps = 161/803 (20%)
Query: 30 PYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEKPTEL 89
PYY+H S+ PG AKNKL F+DGS+ P ++
Sbjct: 17 PYYMHPSENPGS-----------------------CAKNKLSFVDGSILIPPLDD--LNR 51
Query: 90 ALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKSIAT 149
++W +CNSLI SW+ +S++ ++FS+ + I + +I
Sbjct: 52 SVWERCNSLIHSWILNSLQ---------------------ERFSKVDRVRISSLCTTINN 90
Query: 150 ISQGSMSVASYYTKLKALWDELENY--------RDPYTCNHAKAHQEQLQEDRLMQFLMG 201
+ QG+ V Y+T+LK+LW+EL ++ P C ++ + ED+++QFL G
Sbjct: 91 LKQGTKFVLEYFTELKSLWEELNSHCPMPMCTCPHPCRCESMRSARNFRLEDQIIQFLTG 150
Query: 202 MNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQL--SSEPAESFTIAANIQSKASGI 259
+N+++ V++ +++ ++ + YSLVIQEE+ + +S E I N
Sbjct: 151 LNDNFGVVKTQVVIQE---SINKIYSLVIQEESNNSVVTASSSIEDSNILVNASDARKPF 207
Query: 260 KNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQQNRGSRSKPQ 319
K H + + YC FC K HT + C K G P N+GS S
Sbjct: 208 GRGKLNSGSHPPKNNSK-------YCSFCHKTNHTLEFCY---QKHGFPNANKGSGSTNA 257
Query: 320 SAANMAKNSSMNDGNSLMGFSPEYLQQLAKALSTMNQNS--------SSGNSDTFANA-- 369
+ S + S +G + E Q +S + Q+S +S N++ +
Sbjct: 258 VNSEGVPESQGSSAISQIGLTQE---QYVHLVSLLQQSSLIIPAPPITSANTNHIISEPS 314
Query: 370 -AGLFSTF--ISHVNSIFTNSWILDSGATDHMTSHPSLLSKRQPSFSHTVNLPNGTSAPI 426
AG+ + F HV S N W++DSGA +H+ S SLL V LPNGTS +
Sbjct: 315 YAGINTIFPCCLHVKS---NYWLIDSGANEHICSSLSLLHSFYIIKPLHVTLPNGTSVLV 371
Query: 427 THTGNMVFNQDITLKNV------LCVPTFRLNLISASKITKDLNCSVTFFPDSCILQDLT 480
+ G + F+ + N LC RL + ++S + C + +
Sbjct: 372 HYAGTVSFSPHFHITNKMIGLGDLCDGLCRLRIPASSNFSH------------CFVNNFQ 419
Query: 481 TGKMIGWGKQHGGLYYMMQDSISPASFQVSNSPDLWHSRLGHVSFSHFKXXXXXXP---I 537
K+ Y +S+S + S LWH RLGH+S P +
Sbjct: 420 CNKV----------SYESCNSVSCNNNVHIPSTALWHFRLGHLSNQRLSQMHHLYPDIHV 469
Query: 538 NKETVSFHNNCSICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHKIPSHSGARFFLTI 597
+ + + C IC AKQ +LP+ S+ FELL+ D+WGP S G R+FLTI
Sbjct: 470 DNKFI-----CDICHFAKQRKLPYNSSTSIASSNFELLYLDIWGPLAKVSIHGQRYFLTI 524
Query: 598 VDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEFQPLQNFLLNQG 657
VDD +R W L K KSE + FI + + + KIIR+DNG F L F +QG
Sbjct: 525 VDDHSRFLWTILFKNKSEVPSHIQHFIYLIQNKHKVTPKIIRSDNGHVFL-LSAFYASQG 583
Query: 658 IEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILTAVYLINRLPTPL 717
I Q +CV TPQ N V+LINR+PT +
Sbjct: 584 IIHQRSCVETPQHN-----------------------------------VFLINRVPTLV 608
Query: 718 LSNQSPYEKLYKRPPSLDHLRIFGCQCYATNVHP-KGKFDPRAIRCVFMGYPHGKKGYKL 776
L N+SPY+ LYK P ++ ++FGC CYA+ + + K RA + VF+GY G KG L
Sbjct: 609 LENKSPYQVLYKTLPDINSFKVFGCLCYASTLQSHRTKLQSRARKSVFLGYKSGYKGSFL 668
Query: 777 YDLSTQKFLISRDVYFQEDTFPF 799
YDL+T++ +SR+V F E P+
Sbjct: 669 YDLNTKEIFMSRNVTFHESILPY 691
>IMGA|Medtr8g044870.1 Reverse transcriptase, identical
chr08_pseudomolecule_IMGAG_V3 10146606-10147487 H
EGN_Mt090430 20090702
Length = 293
Score = 293 bits (751), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 138/291 (47%), Positives = 187/291 (64%)
Query: 1002 MDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIKYHSDGTIERYKARLVAKGYTQVEGL 1061
M +E+ AL++ TW +V LPP KPIGCRW++KIK++ DG+IERYKARLVAKGY Q+EGL
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHNVDGSIERYKARLVAKGYNQIEGL 60
Query: 1062 DYKETFSPTAKMTTLRCLLTIAAARNWFTHQLDVQNAFLHGNLQEIVYMELPPGLCRQGE 1121
DY +T+SP AK+TT+R ++ +A+ +W HQ DV NAFLHG LQE VYM +PPG+ +
Sbjct: 61 DYFDTYSPVAKLTTVRFIIALASINHWHLHQFDVNNAFLHGELQEDVYMIIPPGVPHSHQ 120
Query: 1122 NMVCRLNKSLYGLKQASRNWFSTFSEALASAGFAQSKADYSLFTKQQDTSFTAVLIYVDD 1181
+ VC+LNKSLYGL+QAS W+ + L S G+ Q+ +D SLF K +SFT +L+YVDD
Sbjct: 121 DEVCKLNKSLYGLQQASMKWYEKLTNILISTGYKQAASDASLFIKHTHSSFTILLVYVDD 180
Query: 1182 ILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFSHSKKGIFMSQRKYALDILEDS 1241
+++ G+++ E YFLG+E +HSK GI + QRKY LD+LEDS
Sbjct: 181 VILAGDTLSEFNTIKGVLHDAFKIKDIGQLKYFLGLEVAHSKSGISLCQRKYCLDLLEDS 240
Query: 1242 GHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXXXXXXXXXTVTRPDIVY 1292
G TGS+P + P + ++KL D TRPDI Y
Sbjct: 241 GLTGSKPMNTPSDPSIKLHNDSAPSFPDIPAYRRLIGRLLYLNTTRPDITY 291
>IMGA|Medtr7g025490.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr07_pseudomolecule_IMGAG_V3 6252058-6249983
H EGN_Mt090430 20090702
Length = 509
Score = 260 bits (664), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 174/536 (32%), Positives = 236/536 (44%), Gaps = 137/536 (25%)
Query: 922 RRSTRDRQPPAWHQEYFMSAAVNHXXXXXXXXXXXXYPLSHYLSLSQFSLSHRAFLASIT 981
R STR R PA Q++ SA P+S LS S S+ +F +I+
Sbjct: 105 RHSTRTRTTPAHLQDFVCSA----------------LPISASLSYHPLSPSYCSFTLAIS 148
Query: 982 SQVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIKYHSDG 1041
S +EP+++ QA P WQ AM EL AL+ T W++
Sbjct: 149 SDIEPSSFKQAQSDPRWQLAMSPELSALEATGT----------------WIF-------- 184
Query: 1042 TIERYKARLVAKGYTQVEGLDYKETFSPTAKMTTLRCLLTIAAARNWFTHQLDVQNAFLH 1101
+D SP W D N FLH
Sbjct: 185 -------------------VDPPPNISPIGS--------------KWIFRLNDANNTFLH 211
Query: 1102 GNLQEIVYMELPPGLCRQGENMVCRLNKSLYGLKQASRNWFSTFSEALASAGFAQSKADY 1161
G+LQE VYM P G+ VC+L KSLYGLKQASR WF L + GF Q+ AD+
Sbjct: 212 GDLQEDVYMHPPQGVSPPRPGQVCKLLKSLYGLKQASRRWFEKLISLLLTIGFVQASADH 271
Query: 1162 SLFTKQQDTSFTAVLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFSH 1221
S + TSFTA+LIYV +H
Sbjct: 272 SFLIRASPTSFTALLIYV----------------------------------------AH 291
Query: 1222 SKKGIFMSQRKYALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXXXXXXX 1281
S KGI + QRKY LD+L D+G T + S P++ L + DG D
Sbjct: 292 SSKGISLCQRKYCLDLLSDAGLTTCKSVSTPLDYACLLHIDDGPPFDDVLAYRCLIGCLL 351
Query: 1282 XXTVTRPDIVYSVRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENNLKLSAFC 1341
T TRPDI ++ + LSQ+M +P H A+ VL+Y++ PG+GL PR + ++L F
Sbjct: 352 YLTTTRPDISFATQQLSQFMAKPSVNHHRTALCVLRYLQVCPGRGLFFPRTSEMQLLGFS 411
Query: 1342 DSDWAGCRTTRRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIHY 1401
D+DW GC +RRS++ ++ + ++ +S S MA+ L +
Sbjct: 412 DADWGGCVDSRRSLA-----FQEAIHRFLFFLRSGISCFSISHPRTPMAHIRLSI----- 461
Query: 1402 LLRDLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKP 1457
L+CDNQ+ALHIAANPVF+ERTKH++IDCHIVREK+Q G P
Sbjct: 462 --------------LYCDNQSALHIAANPVFYERTKHLDIDCHIVREKVQRGSDAP 503
>IMGA|Medtr5g103970.1 Polynucleotidyl transferase, Ribonuclease H
fold chr05_pseudomolecule_IMGAG_V3 41676281-41681462 E
EGN_Mt090430 20090702
Length = 479
Score = 252 bits (644), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 125/253 (49%), Positives = 163/253 (64%), Gaps = 2/253 (0%)
Query: 548 CSICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHKIPSHSGARFFLTIVDDFTRCTWV 607
C +C A+ +LPF SS F+LLH D+WGP I S G ++FLTIVDD TR W+
Sbjct: 16 CDVCHFARHKKLPFSHSSSHASSKFQLLHFDIWGPLAINSIHGHKYFLTIVDDHTRFLWI 75
Query: 608 FLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEFQPLQNFLLNQGIEFQNTCVYT 667
L+K K+E + FI + QF+ + KIIRTDNGSEF L F ++GI Q++CV T
Sbjct: 76 ILLKTKAEVPMHIKNFIVMIENQFHVTPKIIRTDNGSEFL-LHEFYASKGILHQSSCVET 134
Query: 668 PQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILTAVYLINRLPTPLLSNQSPYEKL 727
PQQNG VERKH+HILN+ R+L +QS +PL FW L AV+LINR+ TP+L N SPY L
Sbjct: 135 PQQNGRVERKHQHILNIGRALLYQSKLPLSFWSYAFLHAVFLINRITTPVLHNFSPYHLL 194
Query: 728 YKRPPSLDHLRIFGCQCYATNVHPK-GKFDPRAIRCVFMGYPHGKKGYKLYDLSTQKFLI 786
Y PP + ++FGC CYA+++ K + RA + VF+GY G KGY LYDL T++ I
Sbjct: 195 YDSPPDITTFKVFGCLCYASSLQSHITKLETRARKSVFLGYKLGFKGYVLYDLHTREIFI 254
Query: 787 SRDVYFQEDTFPF 799
SR V F E P+
Sbjct: 255 SRHVVFHECVLPY 267
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 88/142 (61%), Gaps = 15/142 (10%)
Query: 921 LRRSTRDRQPPAWHQEYFM----SAAVNHXXXXXXXXXXXXYPLSHYLSLSQFSLSHRAF 976
+R S+R++ P++ ++Y S +VN+ Y +S+Y+S S H F
Sbjct: 327 IRCSSRNKISPSYLKDYICPHKSSTSVNNL-----------YSISNYVSYHNISNPHSHF 375
Query: 977 LASITSQVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIK 1036
+ S+ + EP TY++A + W+ AM EL AL+ TW ++ PP KPIGCRW+YKIK
Sbjct: 376 ILSLHAHNEPKTYTEANKFECWRQAMQVELTALENTGTWKIIDSPPNAKPIGCRWIYKIK 435
Query: 1037 YHSDGTIERYKARLVAKGYTQV 1058
+H+DGTIERYKARLVAKGY Q+
Sbjct: 436 HHADGTIERYKARLVAKGYNQL 457
>IMGA|Medtr4g157500.1 polyprotein-like, putative
chr04_pseudomolecule_IMGAG_V3 39269652-39268814 H
EGN_Mt090430 20090702
Length = 260
Score = 240 bits (613), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 119/259 (45%), Positives = 158/259 (61%)
Query: 1163 LFTKQQDTSFTAVLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFSHS 1222
+FTK D+SFT +L+YVDDI++ GNS+ E Y LG+E +HS
Sbjct: 1 MFTKHTDSSFTILLVYVDDIILAGNSLSEFQHIKSILHSSFKIKDLGQLKYVLGLEVAHS 60
Query: 1223 KKGIFMSQRKYALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXXXXXXXX 1282
K+GI + QRKY LD+L DSG S+P S + ++KL D
Sbjct: 61 KQGISLCQRKYCLDLLSDSGTINSKPVSTSSDASLKLHNDSSPPYEDIPSYRRLIGRLLY 120
Query: 1283 XTVTRPDIVYSVRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENNLKLSAFCD 1342
TRPDI + + LSQ++ +P + H AA+RVLKY+K PG+GL PR ++L L F D
Sbjct: 121 LNSTRPDITFITQQLSQFLSKPTQTHHNAALRVLKYLKCCPGKGLFFPRNSSLHLQGFSD 180
Query: 1343 SDWAGCRTTRRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIHYL 1402
DWAGC +RRSISG C F+G+SLISW++KKQT VSRSS+EAEYR++A+ EL WI YL
Sbjct: 181 VDWAGCVDSRRSISGQCFFIGNSLISWRTKKQTTVSRSSSEAEYRALASATCELQWILYL 240
Query: 1403 LRDLKVSQTGPASLFCDNQ 1421
L+DL + + LFCDNQ
Sbjct: 241 LKDLNIQSSKLPVLFCDNQ 259
>IMGA|Medtr7g045780.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 11034924-11036399 H
EGN_Mt090430 20090702
Length = 491
Score = 236 bits (602), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 155/473 (32%), Positives = 241/473 (50%), Gaps = 52/473 (10%)
Query: 60 MIHALTAKNKLGFIDGSLEAPSQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAK 119
M AL AKNKL FI+G ++ P E A W +CN LI SW+ +SV +A+ ++
Sbjct: 1 MKRALGAKNKLAFINGIIQQP--EALDLNRAAWERCNHLIHSWIINSVSESIAQNIVFHD 58
Query: 120 TAYQVWTDFKDQFSQKNAPAIFQIQKSIATISQGSMSVASYYTKLKALWDELENYRDPYT 179
A VW D K++FS+ + I + SI + QG +V+ Y+T++++LW+EL ++R
Sbjct: 59 YALDVWEDLKERFSKADRIRISTLCSSINNLKQGGKTVSEYFTEMRSLWEELNSHRPLPN 118
Query: 180 CN---------HAKAHQEQLQEDRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVI 230
C+ +AH ++ ED++MQFL+G+N+ + V++ IL+M PLP++ + YSLVI
Sbjct: 119 CSCIHRCCCEASTRAHVYRV-EDQIMQFLIGLNDQFSIVKTQILLMDPLPSLNKVYSLVI 177
Query: 231 QEETQRQ-LSSEPAESFTIAANIQSKASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCD 289
QEE+ + S PA+ I N+ K G+ + + +C FC+
Sbjct: 178 QEESNHAPILSLPADESNILVNVADSKKSYGRGK--------GYYSNQ-KNSSRHCTFCN 228
Query: 290 KGGHTEDRCRLK------NNKGGPPQQNRGSRSKPQSAANMAKNSSMNDGNSLMGFSPEY 343
+ HT D C LK N G +GS + + N+ +G+S S +
Sbjct: 229 RTNHTIDTCYLKHGFPNANIPGNSTASTQGSTNSVTVESGNVSNTEHGNGDSGFSISQDR 288
Query: 344 LQQLAKAL--------------STMNQNSSSGNSDTFANAAGLFSTFIS--HVNSIFTNS 387
+ L L ST NQ ++S + +G+ S F H+NS+
Sbjct: 289 YEHLVNLLQQATLLSSAVSPSVSTSNQLTTSPSMPIVPYQSGIQSAFSCSFHINSLPI-- 346
Query: 388 WILDSGATDHMT---SHPSLLSKRQPSFSHTVNLPNGTSAPITHTGNMVFNQDITLKNVL 444
WI+DSGA DH+ SH + K +P V LPNG S + + GN+ F + L NVL
Sbjct: 347 WIIDSGANDHVCFSKSHFTAFYKIKPVL---VTLPNGNSIYVHYAGNVYFTPHLYLNNVL 403
Query: 445 CVPTFRLNLISASKITKDLNCSVTFFPDSCILQDLTTGKMIGWGKQHGGLYYM 497
F++NLIS SK+ L+CS F + C++QD+T+ KMIG G + GLY +
Sbjct: 404 YSLEFKVNLISVSKMCDSLSCSGNFVSNKCVIQDVTSHKMIGLGDKSNGLYTL 456
>IMGA|Medtr7g123950.1 Retrotransposon gag protein
chr07_pseudomolecule_IMGAG_V3 29015812-29013196 E
EGN_Mt090430 20090702
Length = 302
Score = 223 bits (568), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 160/232 (68%), Gaps = 4/232 (1%)
Query: 9 DESPKARNMESSKAGNMDPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKN 68
++S + ++ +KA P +HHSD PG LV LNG NY WS++M+ +L+AKN
Sbjct: 13 EQSKEKPTLQGAKAMETSLPDPLLLHHSDTPGISLVNQPLNGGNYGEWSRSMLLSLSAKN 72
Query: 69 KLGFIDGSLEAPSQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDF 128
KLG IDG+++APS ++ +L LW +CN L+L+W+ HS+E D+A VI + TA VW+D
Sbjct: 73 KLGLIDGTVKAPSADDP--KLPLWKRCNDLVLTWILHSIEPDIARSVIFSDTAAAVWSDL 130
Query: 129 KDQFSQKNAPAIFQIQKSIATISQGSMSVASYYTKLKALWDELENYRDPYTCNHAKAHQE 188
D+FSQ + I+QI++ I+ QGS+ ++ YYTKLK+LWDEL +Y++P TC+ +
Sbjct: 131 HDRFSQGDESRIYQIRQEISECRQGSLLISDYYTKLKSLWDELGSYQEPITCSCDMLKKV 190
Query: 189 QLQE--DRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQL 238
++E +++MQFLMG+NESY VR +ILMM PLP+ R+ + L++Q+E Q ++
Sbjct: 191 AVREEKEKVMQFLMGLNESYSQVRGSILMMNPLPDTRKVHGLILQQERQMEV 242
>IMGA|Medtr8g044880.1 polyprotein-like, putative
chr08_pseudomolecule_IMGAG_V3 10147539-10149356 H
EGN_Mt090430 20090702
Length = 196
Score = 184 bits (467), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 131/190 (68%), Gaps = 18/190 (9%)
Query: 1313 IRVLKYIKSTPGQGLLLPRENNLKLSAFCDSDWA-GCRTTRRSISGYCIFLGSSLISWKS 1371
+RVL Y+K PG+GL PR+++L++ + ++DWA GC+ TRRSIS C F W
Sbjct: 1 MRVLSYLKGCPGKGLFFPRQSSLQIQGYTNADWAVGCKDTRRSISEQCFF------CW-- 52
Query: 1372 KKQTNVSRSSAEAEYRSMANTCLELTWIHYLLRDLKVSQTGPASLFCDNQAALHIAANPV 1431
SS+EAEYR++A+ EL + YLLRDLKV+ P L+CDNQ+A++IAANPV
Sbjct: 53 --------SSSEAEYRALASATCELQRLTYLLRDLKVNCIKPPVLYCDNQSAIYIAANPV 104
Query: 1432 FHERTKHIEIDCHIVREKLQSGLVKPQYVPTRLQLADIFTKALGREQFQFLRSKLGIQNI 1491
FHE TKH+EIDCHIVREKLQ+GL K + ++ Q+AD FTK+L + F L SKLG+ +I
Sbjct: 105 FHECTKHLEIDCHIVREKLQAGLFKLLPISSKDQVADFFTKSLLPQPFNPLLSKLGMLDI 164
Query: 1492 HSP-TXGGVL 1500
+ P T GG+L
Sbjct: 165 YHPRTCGGIL 174
>IMGA|Medtr5g086570.1 Ty1/copia-element polyprotein, related
chr05_pseudomolecule_IMGAG_V3 33221869-33220686 H
EGN_Mt090430 20090702
Length = 369
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 147/262 (56%), Gaps = 15/262 (5%)
Query: 28 SHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEKPT 87
S PYY+ SD PG LV LNGENYR+WS++M AL AK KLGFIDG++ P K T
Sbjct: 40 SSPYYLGSSDNPGTPLVAAVLNGENYRTWSRSMKTALQAKLKLGFIDGTITKPGM--KTT 97
Query: 88 ELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKSI 147
W + +S++ +W+ ++ + L + HA TA +W D +++F+Q N P I Q+ +++
Sbjct: 98 NYVNWERADSMVTAWIINATDPVLHSSISHASTARDIWLDLEERFAQTNTPRIHQLWRNL 157
Query: 148 ATISQGS-MSVASYYTKLKALWDELENYR--DPYTCNHAKAHQEQLQEDRLMQFLMGM-N 203
+ + +SV ++YT+ K+L DEL + TC +K +E RL FL + N
Sbjct: 158 CLMQEDDELSVTAFYTQFKSLLDELSELQPLPECTCGASKELMRMEEEQRLHLFLGSLDN 217
Query: 204 ESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSE-------PAESFTIAANIQSKA 256
E Y V+++IL + PLP++R+A++ V++EE + E P +F + + K
Sbjct: 218 EKYGHVKTSILNVEPLPSLRRAFNHVLREEAHFPVEKEKGNNKMDPGTAFHSYSENKQKR 277
Query: 257 SGIKNNKTCDHCHRSGHTIEEC 278
G K CDHC + GH +C
Sbjct: 278 DGPK--PKCDHCGKVGHPKSKC 297
>IMGA|Medtr6g069740.1 Zinc finger, C4-type
chr06_pseudomolecule_IMGAG_V3 12973766-12974997 H
EGN_Mt090430 20090702
Length = 366
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 196/385 (50%), Gaps = 56/385 (14%)
Query: 26 DPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEK 85
D +YVH S+ P ++V L+G NY +WS++MI AKNKL FIDGS+E P +++
Sbjct: 8 DTESVFYVHSSEGPNFVVVAPPLDGSNYIAWSRSMIRDFGAKNKLKFIDGSMEIPDEDD- 66
Query: 86 PTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQK 145
W +CN LI SW+ +S+ +A+ ++ + A W+D K++F++
Sbjct: 67 -LNRNAWERCNHLIQSWIINSISLQIAQTLVFHENATDAWSDLKERFAK----------- 114
Query: 146 SIATISQGSMSVASYYTKLKALWDELENYRD------PYTCNHAKAHQEQ--LQEDRLMQ 197
++V Y+T++K LW+EL ++R P+ C A + + ED+++Q
Sbjct: 115 ---------VTVLEYFTEIKTLWEELNSHRPMPHCTCPHPCRCAAMREARNFRLEDQVIQ 165
Query: 198 FLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQ-LSSEPAESFTIAANIQSKA 256
FL G+N+ + V++ +LM+ PLP++ + YSLV+QEE+ Q LSS E +I ++S+
Sbjct: 166 FLTGLNDQFNVVKTQVLMLDPLPSINKVYSLVVQEESNNQSLSSPIDEPLSIVNVVESR- 224
Query: 257 SGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQQNRGSRS 316
K H+ + R +C FC K HT + K+ G P Q + S
Sbjct: 225 ------KPQGRGRGYSHSFKPPR----HCSFCGKSNHTVEFFYQKH--GHPNFQKQSS-- 270
Query: 317 KPQSAANMAKNSSMNDG-NSLMGFSPEYLQQLAKALSTMNQNSSSGNSDTFANAAGLFST 375
SS ND + G S E LA + + N + +S++F N +G+ S
Sbjct: 271 -------YVNVSSRNDELETQSGSSSEASSILASSPFSANLIHAPSSSNSF-NTSGISSI 322
Query: 376 FISHVNSIFTNSWILDSGATDHMTS 400
F + S ++ W+LDSGA +H+ S
Sbjct: 323 FSCSLQSK-SDLWLLDSGANEHIVS 346
>IMGA|Medtr5g093020.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr05_pseudomolecule_IMGAG_V3
36507044-36505941 H EGN_Mt090430 20090702
Length = 367
Score = 162 bits (411), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 136/221 (61%), Gaps = 10/221 (4%)
Query: 21 KAGNMDPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAP 80
K + DP P+++H S+ PG +LV L NY +WS+AM AL++KNK+ FI+G+L P
Sbjct: 21 KDPSQDPRSPFFLHPSENPGAVLVSTPLTDHNYHNWSRAMKRALSSKNKIRFINGTLPKP 80
Query: 81 SQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAI 140
S + +L W++C++++LSW+T ++ + + I ++A+++W D +D+FS+ N +
Sbjct: 81 SYLDSTYDL--WDRCDNMVLSWITRTLSPHIFQSTICIESAFELWKDLEDRFSKGNFFRV 138
Query: 141 FQIQKSIATISQGSMSVASYYTKLKALWDELENYR--------DPYTCNHAKAHQEQLQE 192
+ + + + QG S++ Y+T +K LWDELE+ R +P TC+ + + +
Sbjct: 139 SDLLRDLHSTQQGDRSLSKYFTNMKILWDELEDLRPTPSCSYVNPCTCSLSNSVRNYKNM 198
Query: 193 DRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEE 233
+ ++ FL G+N Y VR+ L+M PLP++ + YSLV Q++
Sbjct: 199 EYIICFLKGLNTIYSNVRTQNLLMDPLPSISKVYSLVSQQD 239
Score = 133 bits (334), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 84/120 (70%)
Query: 1375 TNVSRSSAEAEYRSMANTCLELTWIHYLLRDLKVSQTGPASLFCDNQAALHIAANPVFHE 1434
T VS+SS+EAEYR+MA T E+ W+ YLL+D + PA L+CD+Q+A HIAAN FHE
Sbjct: 247 TTVSKSSSEAEYRAMATTVCEIQWLTYLLQDFNLQFHTPALLYCDSQSARHIAANTSFHE 306
Query: 1435 RTKHIEIDCHIVREKLQSGLVKPQYVPTRLQLADIFTKALGREQFQFLRSKLGIQNIHSP 1494
RTKHIE+DCHIVREKLQ L V + QLAD+ TK L F SKLG+++I++P
Sbjct: 307 RTKHIELDCHIVREKLQQKLFHLLPVSSSQQLADVLTKPLDPLPFSNFISKLGLKDIYTP 366
>IMGA|Medtr3g019580.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 4112343-4111299 H
EGN_Mt090430 20090702
Length = 334
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 131/247 (53%), Gaps = 30/247 (12%)
Query: 60 MIHALTAKNKLGFIDGSLEAPSQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAK 119
M AL KNK F+DGS+E P +E A W +CN+L+ +W+ +S+ +A+ V+ +
Sbjct: 3 MRRALAMKNKFKFVDGSIEVP--DEHDLNRAAWERCNNLVHTWIINSISPSIAQSVVFIE 60
Query: 120 TAYQVWTDFKDQFSQKNAPAIFQIQKSIATISQGSMSVASYYTKLKALWDELENYRD--- 176
A +W D KD+F + + + Q+Q+ I+ + QGS V Y+T+L+ LW+EL+ YR
Sbjct: 61 NAMDMWNDLKDRFMRGDRIRVAQLQQEISNLKQGSKKVTEYFTELRGLWEELDQYRPMPH 120
Query: 177 -----PYTCNHAKAHQEQLQEDRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQ 231
P +C + + EDR++QFL+G+NE Y+ V S +L+M PLP + + +S+++Q
Sbjct: 121 CTCPIPCSCLAMRNAKGFRLEDRIIQFLIGLNEEYQSVTSQVLLMDPLPQINRVFSMIMQ 180
Query: 232 EETQRQLSSEPAESFTIA--------------------ANIQSKASGIKNNKTCDHCHRS 271
+E + Q A + + N + G N + C+ C RS
Sbjct: 181 QERKAQYGIIVAPASVVEDTSARLVNAVDAQRQFGRGRGNAGFQGRGRGNGRVCNFCGRS 240
Query: 272 GHTIEEC 278
HT+E C
Sbjct: 241 NHTMETC 247
>IMGA|Medtr5g086720.1 4D11_12, related chr05_pseudomolecule_IMGAG_V3
33350941-33351963 H EGN_Mt090430 20090702
Length = 326
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 137/264 (51%), Gaps = 19/264 (7%)
Query: 21 KAGNMDPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAP 80
K+ +D S PYY+ SD PG LV LNGENYR+WS++M AL AK KLGFIDG++ P
Sbjct: 25 KSHAIDSSSPYYLGSSDNPGTPLVAAVLNGENYRTWSRSMKTALRAKLKLGFIDGTITKP 84
Query: 81 SQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAI 140
K T W + +S++ +W+ ++ + L + HA T +W D +++F+Q NAP I
Sbjct: 85 GM--KTTNYVNWERADSMVTAWIINATDPVLHSSISHASTTRDIWLDLEERFAQTNAPRI 142
Query: 141 FQIQKSIATISQGSMSVASYYTKLKALWDELENYRDPYTCNHAKAHQEQLQEDRLMQFLM 200
Q+ +++ + + S L TC +K + +E L FL
Sbjct: 143 HQLWRNLCLMQKDDELSLSELQPLPEC-----------TCGASKELMRREEEQCLHLFLG 191
Query: 201 GM-NESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIAANIQSKASGI 259
+ NE Y V+++IL + PLP++R+A++ V++EE + + E + SG
Sbjct: 192 SLDNEKYGHVKTSILNVEPLPSLRRAFNHVLREEARFTVEKEKGNNKMDPGTAFHSYSGN 251
Query: 260 KNNK-----TCDHCHRSGHTIEEC 278
K N+ CDHC + GH +C
Sbjct: 252 KQNRDGPKPKCDHCGKVGHPKSKC 275
>IMGA|Medtr7g126870.1 hypothetical protein
chr07_pseudomolecule_IMGAG_V3 29583401-29584363 H
EGN_Mt090430 20090702
Length = 302
Score = 147 bits (370), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 133/227 (58%), Gaps = 26/227 (11%)
Query: 31 YYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEKPTELA 90
Y +H ++ P +LV L+G NY SWS++M AL +K+KL FI+G+L P ++ +
Sbjct: 30 YSMHPNENPDAVLVTPLLSGNNYHSWSRSMQVALRSKHKLHFINGTLPRPCDDDHDS--I 87
Query: 91 LWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKSIATI 150
W++C S+I+SWL++ V+ ++++ ++ TA ++W + K++F Q
Sbjct: 88 AWDRCKSMIMSWLSNYVDPEISQSILWMDTALEIWNELKERFYQ---------------- 131
Query: 151 SQGSMSVASYYTKLKALWDELENYRDPYT------CNHAKAHQEQLQEDRLMQFLMGMNE 204
G S++SYYTK+K LW EL+N+R T C +E D++++FL G+NE
Sbjct: 132 --GESSISSYYTKMKKLWQELDNFRPIPTSNCVDDCKAIAKMREYKDSDQVIRFLRGLNE 189
Query: 205 SYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIAAN 251
+ VRS I++M PLP++ + YSL++Q+E Q + + ++ ++ N
Sbjct: 190 QFLAVRSQIMLMDPLPSIGKVYSLLVQQERQVVVPLDESKLLDVSNN 236
>IMGA|Medtr3g058930.1 Polynucleotidyl transferase, Ribonuclease H fold
chr03_pseudomolecule_IMGAG_V3 13084099-13087565 H
EGN_Mt090430 20090702
Length = 563
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 117/464 (25%), Positives = 193/464 (41%), Gaps = 103/464 (22%)
Query: 994 QIPHWQAAMDAE----LQALQRNNTWSLVPLPPGHKPIGCRWVYKIKYHSDGTIERYKAR 1049
++ H+ +D + L++ +N TW L+ L G K I +WV+K+K + +G I ++KAR
Sbjct: 188 ELVHFAMLVDTKPLYKLKSSGKNQTWELIKLTDGKKAIDVKWVFKLKLNPEGKIVKHKAR 247
Query: 1050 LVAKGYTQVEGLDYKETFSPTAKMTTLRCLLTIAAARNWFTHQLDVQNAFLHGNLQEIVY 1109
LVA+ + + KE F T E+V+
Sbjct: 248 LVARVFLK------KEGFDYT-----------------------------------EVVF 266
Query: 1110 MELPPGLCRQGENMVCRLNKSLYGLKQASRNWFSTFSEALASAGFAQSKADYSLFTKQQD 1169
+LNK+LYGLKQA R W + GF + A++ ++ K +
Sbjct: 267 ----------------KLNKALYGLKQAPRAWNKRIEKFFVEQGFKKCLAEHGVYVKGSE 310
Query: 1170 TSFTAVLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFSHSKKGIFMS 1229
T++LI +IL T KG+ ++
Sbjct: 311 G--TSLLIICLEILRTT-------------------------------------KGLILN 331
Query: 1230 QRKYALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXXXXXXXXXTVTRPD 1289
Q KY +I + N + + +K DPT +R D
Sbjct: 332 QTKYDTEIQKKFNMLDFNSSITLAYANNINEVKEEDKGVDPTILRRLIGLLRYLCQSRLD 391
Query: 1290 IVYSVRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENN---LKLSAFCDSDWA 1346
I YSV +S++M P K H+ AA ++++YI T G+L P L + + D+DW
Sbjct: 392 ISYSVGIVSKFMSNPLKTHFLAAKKIIRYIHGTLQYGILFPEAQETEQLSMIDYSDADWC 451
Query: 1347 GCRTTRRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIHYLLRDL 1406
+ RR + + L + ISW SKKQ V+ SS E EY ++ + W+ +L
Sbjct: 452 RDKRDRRRTTSFLFMLQGAPISWSSKKQPIVALSSCEVEYVVGSSAACQANWLQNVLEQS 511
Query: 1407 KVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKL 1450
+ P L DN+ A+++A N + H ++KHIE H +R+++
Sbjct: 512 MIKLKQPIKLLIDNKYAINLAKNHISHGKSKHIETKFHYLRDQV 555
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 684 VARSLFFQSHVPLKFWGECILTAVYLINRLPTPLLSNQSPYEKLYKRPPSLDHLRIFGCQ 743
+ RS+ + +P +FWG + TA Y++NR PT + ++ P E +R PS+ +L++FG
Sbjct: 1 MVRSMLKEKKIPHEFWGAAVNTATYILNRCPTKKMKDKVPEEIWSRRKPSISNLKVFGSI 60
Query: 744 CYA-TNVHPKGKFDPRAIRCVFMGYPHGKKGYKLYDLSTQKFLISRDVYFQEDTF 797
Y + K + + + +GY H Y+L DL ++K I+RDV E+ +
Sbjct: 61 FYKHVPDSRRKKLEDKTEAMILVGY-HNTGAYRLLDLHSKKISITRDVKVLEEEY 114
>IMGA|Medtr6g069750.1 Reverse transcriptase, putative
chr06_pseudomolecule_IMGAG_V3 12976555-12977103 H
EGN_Mt090430 20090702
Length = 149
Score = 141 bits (356), Expect = 2e-33, Method: Composition-based stats.
Identities = 69/149 (46%), Positives = 89/149 (59%), Gaps = 28/149 (18%)
Query: 1002 MDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIKYHSDGTIERYKARLVAKGYTQV--- 1058
M AE+ AL+ TW LV LPP KPIGCRW+YKIK+++DG+I+RYKARLV KGY QV
Sbjct: 1 MQAEITALENTGTWKLVDLPPNVKPIGCRWIYKIKHYADGSIQRYKARLVVKGYNQVEGW 60
Query: 1059 -------------------------EGLDYKETFSPTAKMTTLRCLLTIAAARNWFTHQL 1093
EG DY +T+S AKMTT+R ++ +A+ W H+L
Sbjct: 61 DYFDTYSPVAKLTTARLVVKGYNQVEGWDYFDTYSLVAKMTTVRTVIALASINQWHIHKL 120
Query: 1094 DVQNAFLHGNLQEIVYMELPPGLCRQGEN 1122
D +AFLHG+LQE VYM +P G+ N
Sbjct: 121 DANSAFLHGDLQEDVYMLIPQGITTSKPN 149
>IMGA|Medtr3g080970.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 19236298-19236945 H
EGN_Mt090430 20090702
Length = 200
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 25/208 (12%)
Query: 26 DPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEK 85
D +YVH S+ ++V L+G NY W ++M+ A KNK+ FID S+E P+ EK
Sbjct: 8 DTESIFYVHPSEGSNSVIVAPPLDGSNYLGWRRSMVRAFGMKNKMKFIDVSMEIPN--EK 65
Query: 86 PTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQK 145
+ +CN LI SW+ +SV +A+ + +FS+ + I ++
Sbjct: 66 DLNPNVRERCNHLIQSWIINSVSTQIAQTL---------------RFSKIDRIRIATLRS 110
Query: 146 SIATISQGSMSVASYYTKLKALWDELENYR--------DPYTCNHAKAHQEQLQEDRLMQ 197
I + QGS V Y+T++K LW+EL ++ P C + + + ED+++Q
Sbjct: 111 KINNVKQGSKYVLDYFTEMKTLWEELNSHHPMPHCTCPHPCRCTAMRETRNFILEDQVIQ 170
Query: 198 FLMGMNESYKGVRSNILMMTPLPNVRQA 225
FL G+N+ + V + +LM+ PLP+ + +
Sbjct: 171 FLTGLNDQFNVVNTQVLMLDPLPSTKAS 198
>IMGA|Medtr5g049200.1 retroelement pol polyprotein-like, related
chr05_pseudomolecule_IMGAG_V3 21011474-21012209 E
EGN_Mt090430 20090702
Length = 210
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 387 SWILDSGATDHMTSHPSLLSKRQPSFSHTVNLPNGTSAPITHTGNMVFNQDITLKNVLCV 446
SWILDSGA++HMT + + V LPN + T G + + L+NVL V
Sbjct: 35 SWILDSGASNHMTGTLQYMHDVKEVIGCPVGLPNCRTTTCTKEGTVKLTDGLRLENVLYV 94
Query: 447 PTFRLNLISASKITKDLNCSVTFFPDSCILQDLTTGKMIGWGKQHGGLYYMMQ-DSISPA 505
P NLIS S++ +LNC+V F + C +QD T+ +IG G+Q GLY+ + +
Sbjct: 95 PKLNCNLISISQLLDELNCNVQFNGNFCAIQDRTSKMLIGAGEQRDGLYFFREVPKVKAC 154
Query: 506 SFQVSNSPDLWHSRLGHVSF 525
+ +N ++WH RLGH S+
Sbjct: 155 KVEGTNQLEVWHKRLGHPSW 174
>IMGA|Medtr3g110550.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr03_pseudomolecule_IMGAG_V3
27872933-27871392 E EGN_Mt090430 20090702
Length = 256
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/317 (28%), Positives = 129/317 (40%), Gaps = 70/317 (22%)
Query: 1175 VLIYVDDILVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFSHSKKG-IFMSQRKY 1233
+++YV D++VTGN+ + YFLGIE G + ++Q KY
Sbjct: 1 MIVYVGDMIVTGNNTPLLQQLVSHLNSAFSLKDLGALKYFLGIEVKPQSNGSLLITQSKY 60
Query: 1234 ALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTXXXXXXXXXXXXTVTRPDIVYS 1293
D+L + ++ PM ++KL+ DPT + P
Sbjct: 61 VRDLLAKTDMQEAKSLPSPMISDLKLSKDGSTPFSDPTLCRSIVRALQYANLIGP----- 115
Query: 1294 VRTLSQYMHEPRKPHWEAAIRVLKYIKSTPGQGLLLPRENNLKLS--AFCDSDWAGCRTT 1351
LS VL+++K T GLL+ LS A+CD+DW G
Sbjct: 116 ---LSN---------------VLRHLKGTLSWGLLVRPIPTYPLSILAYCDADW-GSDPD 156
Query: 1352 RRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIHYLLRDLKVSQT 1411
RS+ C+FLG +LISW +KKQ ++RSS EAEY S+A EL WI LKV Q
Sbjct: 157 DRSVDA-CVFLGPNLISWWAKKQAVIARSSTEAEYSSLALAKSELLWIKTYGARLKVIQ- 214
Query: 1412 GPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKPQYVPTRLQLADIFT 1471
LF N VP ++++ DI T
Sbjct: 215 --KKLFVSN---------------------------------------VPGQVKVVDIMT 233
Query: 1472 KALGREQFQFLRSKLGI 1488
KAL +F+ LR+KL +
Sbjct: 234 KALPPTRFEGLRTKLTV 250
>IMGA|Medtr5g086750.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33354025-33354392 H EGN_Mt090430 20090702
Length = 108
Score = 97.4 bits (241), Expect = 5e-20, Method: Composition-based stats.
Identities = 49/106 (46%), Positives = 62/106 (58%)
Query: 1123 MVCRLNKSLYGLKQASRNWFSTFSEALASAGFAQSKADYSLFTKQQDTSFTAVLIYVDDI 1182
MV L KSLYGLKQASRNW+S S+AL GF +S AD+SLFT +++ F AVLIYVDD+
Sbjct: 1 MVYWLRKSLYGLKQASRNWYSKLSQALIEYGFQESHADHSLFTYSRESIFMAVLIYVDDL 60
Query: 1183 LVTGNSMQEIMAXXXXXXXXXXXXXXXXXGYFLGIEFSHSKKGIFM 1228
++ GN I YFLG+E + G+FM
Sbjct: 61 VIAGNDTDTITNFKQYLKQCFHMKDLGPLKYFLGLELARGANGLFM 106
>IMGA|Medtr3g068700.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr03_pseudomolecule_IMGAG_V3
16240238-16240810 H EGN_Mt090430 20090702
Length = 147
Score = 94.4 bits (233), Expect = 4e-19, Method: Composition-based stats.
Identities = 56/186 (30%), Positives = 87/186 (46%), Gaps = 53/186 (28%)
Query: 60 MIHALTAKNKLGFIDGSLEAPSQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAK 119
M AL KNK F DGS+ P VE DL
Sbjct: 3 MRRALAMKNKFKFFDGSIPIP--------------------------VEDDLL------- 29
Query: 120 TAYQVWTDFKDQFSQKNAPAIFQIQKSIATISQGSMSVASYYTKLKALWDELENYRD--- 176
F + + + ++Q+ IA + QGS V ++T L+ LW+EL+ YR
Sbjct: 30 ------------FMRGDRIRVAELQEEIANLKQGSKKVTEFFTNLRGLWEELDQYRPMPQ 77
Query: 177 -----PYTCNHAKAHQEQLQEDRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQ 231
TC + ++ + EDR+++FLMG+NE Y+GV S +L+M PLP + + +S+V+Q
Sbjct: 78 CTCPIQCTCLAVRNNKSFIAEDRIIKFLMGLNEDYQGVTSQVLLMDPLPQINRVFSMVMQ 137
Query: 232 EETQRQ 237
+E + Q
Sbjct: 138 QERKMQ 143
>IMGA|Medtr3g169320.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 44131380-44131084 H
EGN_Mt090430 20090702
Length = 98
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 609 LMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEFQPLQNFLLNQGIEFQNTCVYTP 668
L K KSE S + FI + QFN VK +RTDNG EF + +F ++GIE Q +CV TP
Sbjct: 2 LCKTKSEVSKSVQNFILNIENQFNCKVKTVRTDNGPEF-LMPDFYSSKGIEHQTSCVETP 60
Query: 669 QQNGVVERKHRHILNVARSLFFQSHVPLKFWGECIL 704
QQNG VERKH+HILNVAR++ FQS + F C L
Sbjct: 61 QQNGRVERKHQHILNVARAMLFQSKFMVLFSFACHL 96
>IMGA|CU571152_16.1 Polynucleotidyl transferase, Ribonuclease H fold
CU571152.5 61656-61988 H EGN_Mt090430 20090702
Length = 110
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 590 GARFFLTIVDDFTRCTWVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEFQ-- 647
GAR+F+ +DD++ TW++++K + E + + I F + +TQF+ +K+ R DN E++
Sbjct: 3 GARYFVLFIDDYSHFTWIYMIKNRHELTQIYINFAKMIQTQFSKVIKVFRRDNAMEYRDS 62
Query: 648 PLQNFLLNQGIEFQNTCVYTPQQNGVVERKHRHILNVARSLFFQSHVP 695
L +FL QG + + YT QQ G ERKHRHIL+ ++ + P
Sbjct: 63 KLLSFLSEQGTFSEFSYPYTSQQKGRAERKHRHILDSVCAMLISASCP 110
>IMGA|Medtr3g058920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 13083640-13084056 H
EGN_Mt090430 20090702
Length = 138
Score = 84.7 bits (208), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 74/125 (59%), Gaps = 3/125 (2%)
Query: 547 NCSICPLAKQTRLPFPIS-SITTKIPFELLHCDVWGPHKIPSHSGARFFLTIVDDFTRCT 605
+C+IC + K +R F + K ++H D++GP K+P++SG R+F+T VD++++
Sbjct: 14 SCNICLVGKHSRSAFKSELKMRAKHVLNVVHSDIYGPIKVPTYSGNRYFITFVDEYSKML 73
Query: 606 WVFLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEF--QPLQNFLLNQGIEFQNT 663
W++L+K KS+ ++ KF + Q +KI+ T G E+ + +++ NQGI + T
Sbjct: 74 WLYLIKLKSDALEVFKKFKVLPEKQSGMKLKILITYGGGEYTSKDFESYCTNQGIIHEVT 133
Query: 664 CVYTP 668
YTP
Sbjct: 134 TPYTP 138
>IMGA|Medtr7g021510.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr07_pseudomolecule_IMGAG_V3 5264429-5264084 H
EGN_Mt090430 20090702
Length = 98
Score = 83.6 bits (205), Expect = 8e-16, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 57/107 (53%), Gaps = 21/107 (19%)
Query: 1389 MANTCLELTWIHYLLRDLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVRE 1448
MANT EL WI LL DL + GP L C++Q ALHIA VFH RTK+I++DCH +
Sbjct: 1 MANTTCELKWIKSLLLDLNILHKGPMLLNCNSQTALHIAKKLVFHYRTKYIQVDCHFIY- 59
Query: 1449 KLQSGLVKPQYVPTRLQLADIFTKALGREQFQFLRSKLGIQNIHSPT 1495
+FTKAL R QFQ + K+ I+ H+ T
Sbjct: 60 --------------------LFTKALERHQFQTVLGKMAIRKPHAAT 86
>IMGA|Medtr4g025100.1 Integrase, catalytic region; Zinc finger,
CCHC-type; Retrotransposon gag protein, putative
chr04_pseudomolecule_IMGAG_V3 5913545-5913860 H
EGN_Mt090430 20090702
Length = 84
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 1387 RSMANTCLELTWIHYLLRDLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIV 1446
+++A E WI Y L D + + P ++CDN +++HI ANPVFHERTKHIEIDCH+V
Sbjct: 2 QALAQATSEGKWILYFLDDFPIPHSSPIIIYCDNNSSMHIVANPVFHERTKHIEIDCHVV 61
Query: 1447 REKLQ 1451
R+K++
Sbjct: 62 RDKIK 66
>IMGA|Medtr8g101650.1 Putative retroelement pol polyprotein,
chr08_pseudomolecule_IMGAG_V3 22106944-22106630 H
EGN_Mt090430 20090702
Length = 104
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 57/93 (61%)
Query: 1002 MDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIKYHSDGTIERYKARLVAKGYTQVEGL 1061
M +L+A+ N WSL L IGC+W Y+IK+ +GTIER+K L+ K YT+ EG+
Sbjct: 1 MTNKLRAITTKNAWSLTALSKDKVVIGCKWEYRIKHKVNGTIERFKTFLMVKDYTRQEGV 60
Query: 1062 DYKETFSPTAKMTTLRCLLTIAAARNWFTHQLD 1094
+ +TFS AK+T + LL+I A+ QLD
Sbjct: 61 NSLDTFSLVAKITIVCLLLSIVVAKGRILQQLD 93
>IMGA|Medtr5g032700.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr05_pseudomolecule_IMGAG_V3
13269922-13268996 E EGN_Mt090430 20090702
Length = 213
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 30 PYYVHHSDQPGHMLVPVK--LNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEKPT 87
PYY S + + V V L NY +WS++M AL AK KL FIDGS+ P+ ++
Sbjct: 15 PYYHASSSESCYNSVRVTSLLIESNYLAWSRSMQRALGAKTKLSFIDGSIRVPAIDDLTR 74
Query: 88 ELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKSI 147
W +C LI SW+ +SV +++ +I + K F + ++ + ++ +I
Sbjct: 75 --GAWERCIHLIHSWILNSVSPQISQTIIFHVHVIDFGKNSKKDF-KADSIRVSILRYAI 131
Query: 148 ATISQGSMSVASYYTKLKALWDELENYRDPYTC 180
+ QGS V Y+TK+K LW+EL + R C
Sbjct: 132 NNLKQGSKYVLDYFTKMKTLWEELNSQRPTPNC 164
>IMGA|Medtr8g005190.1 Integrase, catalytic region, related
chr08_pseudomolecule_IMGAG_V3 117969-116692 E
EGN_Mt090430 20090702
Length = 237
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 25/138 (18%)
Query: 164 LKALWDELENYRD--------PYTCNHAKAHQEQLQEDRLMQFLMGMNESYKGVRSNILM 215
+K +WDELE+ R P +C + + + + ++ FL G+N++Y VR+ IL+
Sbjct: 1 MKIIWDELEDLRPTPSCVCAIPCSCKLSTSVRTYKNNEYILCFLKGLNDNYTNVRTQILL 60
Query: 216 MTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIAANIQSKAS---------------GIK 260
M PLP++ + YSLVIQ+++ + +P+ES N S +S G K
Sbjct: 61 MDPLPSISKTYSLVIQQDSTP--TEQPSESNVFNVNSSSTSSAQHKGNHGLGRGRGKGPK 118
Query: 261 NNKTCDHCHRSGHTIEEC 278
+ C +C+++ HT+E C
Sbjct: 119 TSMLCSNCNKTNHTVENC 136
>IMGA|Medtr1g137300.1 TIR-NBS-LRR type disease resistance protein,
related chr01_pseudomolecule_IMGAG_V3 30413365-30412803
H EGN_Mt090430 20090702
Length = 152
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 85/189 (44%), Gaps = 46/189 (24%)
Query: 48 LNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEK--PTELALWNQCNSLILSWLTH 105
+ G NY + SKAMI L +KNK F+DG+++ P + PT W +CN +LS +
Sbjct: 1 MKGPNYATQSKAMIGVLESKNKFVFLDGTIKKPDSTDPLFPT----WKRCNDFVLSGVRA 56
Query: 106 SVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKSIATISQGSMSVASYYTKLK 165
++ + IQ+SI I+ SV TKLK
Sbjct: 57 TISS--------------------------------LIQESIEDITDA--SVLWQETKLK 82
Query: 166 ALWDELENYRDPY-----TCNHAKAHQEQLQEDRLMQFLMGMNESYKGVRSNILMMTPLP 220
L DEL +R P TC + ED + FL G+N+++ RS IL + P+P
Sbjct: 83 NLLDELALFR-PISRCRSTCYAYDTAIDHRSEDETLYFLQGLNDNFAATRSEILGIDPIP 141
Query: 221 NVRQAYSLV 229
+ +A+S +
Sbjct: 142 VLDEAFSRI 150
>IMGA|Medtr5g086560.1 Immunoglobulin/major histocompatibility complex
chr05_pseudomolecule_IMGAG_V3 33219418-33218915 H
EGN_Mt090430 20090702
Length = 167
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 926 RDRQPPAWHQEYFMSAAVNHXXXXX---XXXXXXXYPLSHYLSLSQFSLSHRAFLASITS 982
R R+PPA+ +Y+ AA + YP++++++ +S H+A+LASI +
Sbjct: 44 RTRKPPAYLGDYYCHAAHKNPMSMAPTHSHSSGKVYPITNFINNDCYSRRHQAYLASIHN 103
Query: 983 QVEPTTYSQAVQIPHWQAAMDAELQALQRNNTWSLVPLPPGHK 1025
EP +Y +A++ P WQ AM EL+AL+ N TW L LPP K
Sbjct: 104 NEEPQSYQEAMKKPEWQKAMTVELKALEENGTWDLT-LPPEGK 145
>IMGA|Medtr7g135120.1 Copia protein, related
chr07_pseudomolecule_IMGAG_V3 32083970-32083668 H
EGN_Mt090430 20090702
Length = 100
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/89 (37%), Positives = 55/89 (61%)
Query: 1405 DLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKPQYVPTRL 1464
+LK+ L DN++A+++A N +FH + KH+E H +R+++ + +Y PT+
Sbjct: 3 ELKIGDEVAVKLKSDNKSAINLAKNSIFHGKRKHVETRFHFMRDQVNKNELIVEYCPTQD 62
Query: 1465 QLADIFTKALGREQFQFLRSKLGIQNIHS 1493
QL D+FTKAL R+QF LR ++ + N S
Sbjct: 63 QLTDLFTKALKRDQFLKLRREIRVVNFDS 91
>IMGA|Medtr5g086740.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
33353678-33353912 H EGN_Mt090430 20090702
Length = 57
Score = 71.6 bits (174), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/68 (51%), Positives = 39/68 (57%), Gaps = 21/68 (30%)
Query: 996 PHWQAAMDAELQALQRNNTWSLVPLPPGHKPIGCRWVYKIKYHSDGTIERYKARLVAKGY 1055
P WQ AM K +GCRWVYKIKY + G IE+YKARLVAKGY
Sbjct: 4 PEWQKAM---------------------AKIVGCRWVYKIKYKASGEIEKYKARLVAKGY 42
Query: 1056 TQVEGLDY 1063
TQVEG D+
Sbjct: 43 TQVEGEDF 50
>IMGA|AC235756_37.1 Copia protein, related AC235756.1 212505-212236 H
EGN_Mt090430 20090702
Length = 89
Score = 70.5 bits (171), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/86 (36%), Positives = 53/86 (61%)
Query: 1403 LRDLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKPQYVPT 1462
+++L P L DN++ +++A NP+ R+KHI+ H +RE++ +++ +Y PT
Sbjct: 1 MKELHCEVKKPLKLKIDNRSTINLAKNPIARGRSKHIKARFHFIREQVTKEMIEVEYCPT 60
Query: 1463 RLQLADIFTKALGREQFQFLRSKLGI 1488
+QL D FTKA ++F LR KLG+
Sbjct: 61 EVQLGDGFTKAFKIDRFTCLRDKLGL 86
>IMGA|Medtr3g089920.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 21314429-21315168 H
EGN_Mt090430 20090702
Length = 210
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 77/187 (41%), Gaps = 40/187 (21%)
Query: 610 MKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEF--QPLQNFLLNQGIEFQNTCVYT 667
MK +S+ S + + QF VK ++ DNG EF F +GI + T
Sbjct: 1 MKHRSDASKNFKQLNALLENQFGKKVKRLQIDNGLEFCWSEFNEFCKTEGISRHHMVRNT 60
Query: 668 PQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILTAVYLINRLPTPLLSNQSPYEKL 727
PQQN V +R ++ +L AR + + + FWGE
Sbjct: 61 PQQNSVAKRMNQTLLERARCMLSNAGLTRTFWGET------------------------- 95
Query: 728 YKRPPSLDHLRIFGCQCYATNVHPKGKFDPRAIRCVFMGYPHGKKGYKLYDLSTQKFLIS 787
FGC Y +GK + RA + VF+GY G K Y+++ S + ++S
Sbjct: 96 -----------GFGCTVYYR--VNEGKLESRAKKRVFVGYGDGVKEYRIWSPSENRVILS 142
Query: 788 RDVYFQE 794
R+V F E
Sbjct: 143 RNVVFDE 149
>IMGA|Medtr3g079600.1 Polynucleotidyl transferase, Ribonuclease H
fold chr03_pseudomolecule_IMGAG_V3 18487435-18487012 H
EGN_Mt090430 20090702
Length = 111
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 31/128 (24%)
Query: 548 CSICPLAKQTRLPFPISSITTKIPFELLHCDVWGPHKIPSHSGARFFLTIVDDFTRCTWV 607
C+ICPLAK RLP + + F+L+HCD+WGP+
Sbjct: 15 CTICPLAKFKRLPLCSKNNFSPYSFDLIHCDIWGPY------------------------ 50
Query: 608 FLMKQKSETSDLLIKFIQFTKTQFNTSVKIIRTDNGSEFQPLQNFLLNQGIEFQNTCVYT 667
KS +D + ++ KTQF +K I T+N EF Q FL ++G Q + YT
Sbjct: 51 ----GKSTYNDTTVFYL--VKTQFGKVIKAIHTNNAKEFARTQ-FLHDKGTIHQYSYPYT 103
Query: 668 PQQNGVVE 675
P+QN VVE
Sbjct: 104 PEQNSVVE 111
>IMGA|Medtr3g162300.1 retrotransposon like protein, putative
chr03_pseudomolecule_IMGAG_V3 42355834-42354953 H
EGN_Mt090430 20090702
Length = 58
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/43 (74%), Positives = 34/43 (79%)
Query: 1345 WAGCRTTRRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYR 1387
WAGC TRRS + YCIFLGS+ ISW SKKQ VSRSS EAEYR
Sbjct: 8 WAGCPLTRRSTTDYCIFLGSNCISWASKKQPTVSRSSTEAEYR 50
>IMGA|Medtr8g012170.1 polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 1857213-1857446 H
EGN_Mt090430 20090702
Length = 77
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 1110 MELPPGLCR-QGENMVCRLNKSLYGLKQASRNWFSTFSEALASAGFAQSKADYSLFTKQQ 1168
M P G Q N VC+L KSLYGLKQA + WF + L F +K+D SLF +
Sbjct: 1 MSQPYGFVHPQHPNQVCKLRKSLYGLKQAPQAWFQALQKFLLGYNFQNAKSDTSLFIYVK 60
Query: 1169 DTSFTAVLIYVDDILVT 1185
+F L+YVDDI +T
Sbjct: 61 ANTFAYFLVYVDDIPLT 77
>IMGA|Medtr3g083340.1 Integrase, catalytic region, related
chr03_pseudomolecule_IMGAG_V3 19557937-19559015 H
EGN_Mt090430 20090702
Length = 294
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 27/148 (18%)
Query: 190 LQEDRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIA 249
L++ L QFL G+N+ + V++ +L+M PLP + + YSLVIQEE++ S + T+
Sbjct: 9 LEDPVLPQFLTGLNDQFSIVQTQVLLMEPLPCLNRVYSLVIQEESKDVFESVILMNPTLD 68
Query: 250 ANIQSKASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQ 309
+ SK K + ++S C FC + GHT D C K+ G PP
Sbjct: 69 NSADSKKFPGKGKSSFSSGYKSK-----------LCTFCGRHGHTVDTCYKKH--GFPP- 114
Query: 310 QNRGSRSKPQSAANMAKNSSMNDGNSLM 337
N +NSS+N+ SL+
Sbjct: 115 -------------NFGQNSSVNNVESLL 129
>IMGA|Medtr3g083290.1 Integrase, catalytic region, putative
chr03_pseudomolecule_IMGAG_V3 19547512-19547931 H
EGN_Mt090430 20090702
Length = 139
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 27/148 (18%)
Query: 190 LQEDRLMQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLVIQEETQRQLSSEPAESFTIA 249
L++ L QFL G+N+ + V++ +L+M PLP + + YSLVIQEE++ S + T+
Sbjct: 9 LEDPVLPQFLTGLNDQFSIVQTQVLLMEPLPCLNRVYSLVIQEESKDVFESVILMNPTLD 68
Query: 250 ANIQSKASGIKNNKTCDHCHRSGHTIEECRTLKYYCKFCDKGGHTEDRCRLKNNKGGPPQ 309
+ SK K + ++S C FC + GHT D C K+ G PP
Sbjct: 69 NSADSKKFPGKGKSSFSSGYKSK-----------LCTFCGRHGHTVDTCYKKH--GFPP- 114
Query: 310 QNRGSRSKPQSAANMAKNSSMNDGNSLM 337
N +NSS+N+ SL+
Sbjct: 115 -------------NFGQNSSVNNVESLL 129
>IMGA|Medtr5g076530.1 Polynucleotidyl transferase, Ribonuclease H
fold, putative chr05_pseudomolecule_IMGAG_V3
28013549-28012814 E EGN_Mt090430 20090702
Length = 98
Score = 63.5 bits (153), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 60 MIHALTAKNKLGFIDGSLEAPSQEEKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAK 119
M AL KNK F+DG + P ++ A + +CN+L+ +W+ +SV +A+ V+ +
Sbjct: 1 MRRALAMKNKFKFVDGFIPIPDADD--LNCAAYERCNNLVHTWIINSVSPSIAQSVVSIE 58
Query: 120 TAYQVWTDFKDQFSQKNAPAIFQIQKSIATISQGSMSVA 158
+W D KD+F + + Q+Q+ A + QG+ ++
Sbjct: 59 NVVDMWNDLKDRFMRCGRIRVAQLQQENANLKQGNRKIS 97
>IMGA|Medtr5g015200.1 Helix-turn-helix, AraC type
chr05_pseudomolecule_IMGAG_V3 5047325-5042492 H
EGN_Mt090430 20090702
Length = 372
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 64/153 (41%), Gaps = 44/153 (28%)
Query: 1304 PRKPHWEAAIRVLKYIKSTPGQGLLLPRENNLKLSAFCDSDWAGCRTTRRSISGYCIFLG 1363
P + +A + L +IK++P QGL ++ L F +SD
Sbjct: 28 PIDAYLKAVMHNLMFIKTSPCQGLFFGASSSRSLKWFRNSDL------------------ 69
Query: 1364 SSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIHYLLRDLKVSQTGPASLFCDNQAA 1423
+++ A E I YL +D + F DNQ
Sbjct: 70 ----------------------HQAFAQATCEAQRILYLHQDFHILHAN----FYDNQYG 103
Query: 1424 LHIAANPVFHERTKHIEIDCHIVREKLQSGLVK 1456
HIA N VF E+T HIEIDCH++R+K+Q+G+ K
Sbjct: 104 FHIAVNSVFCEQTIHIEIDCHVIRDKIQAGIQK 136
>IMGA|Medtr8g015810.1 Ty1/copia-element polyprotein, putative
chr08_pseudomolecule_IMGAG_V3 2876704-2878630 E
EGN_Mt090430 20090702
Length = 64
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 37/57 (64%)
Query: 1093 LDVQNAFLHGNLQEIVYMELPPGLCRQGENMVCRLNKSLYGLKQASRNWFSTFSEAL 1149
+DV NAFLHG+LQE VYM+LP G +VC+L KS Y LK A + WF+ AL
Sbjct: 1 MDVHNAFLHGDLQEDVYMKLPRGFHTSSSRLVCKLRKSQYVLKHAPQCWFAKRLVAL 57
>IMGA|CU179634_23.1 hypothetical protein CU179634.6 85266-85502 H
EGN_Mt090430 20090702
Length = 78
Score = 62.0 bits (149), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 45/74 (60%)
Query: 7 MGDESPKARNMESSKAGNMDPSHPYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTA 66
M + + + ++S + +D +Y+H SD PG +LVPV NG + SW ++++ +L+
Sbjct: 1 MTNSASTSTALDSVPSSGIDAGSHFYIHPSDNPGAVLVPVPFNGTGFHSWRRSVLRSLSV 60
Query: 67 KNKLGFIDGSLEAP 80
KNKL FI+G + P
Sbjct: 61 KNKLVFINGECKRP 74
>IMGA|AC137826_20.1 hypothetical protein AC137826.21 78161-79047 H
EGN_Mt090430 20090702
Length = 157
Score = 61.2 bits (147), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 169 DELENYRDPYTCNHAKAHQEQLQEDRL--MQFLMGMNESYKGVRSNILMMTPLPNVRQAY 226
DE ++ P +CN AK+ + RL + F MG+N+ Y R ILMM+ P V Q Y
Sbjct: 38 DEFDSIVPPTSCNCAKSKEYMDSMFRLKPLHFFMGLNDKYSHTRCQILMMSEPPTVNQCY 97
Query: 227 SLVIQEETQRQLSSE 241
+++IQ+++QR+LSS+
Sbjct: 98 AMIIQDKSQRELSSD 112
>IMGA|Medtr8g015800.1 Putative polyprotein,
chr08_pseudomolecule_IMGAG_V3 2875621-2876463 H
EGN_Mt090430 20090702
Length = 110
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 677 KHRHILNVARSLFFQSHVPLKFWGECILTAVYLINRLPTPL 717
KHRHI N++R L FQ ++ FWGECILT YLINR PTP+
Sbjct: 2 KHRHICNISRDLRFQGNLATSFWGECILTIGYLINRTPTPV 42
>IMGA|Medtr8g043330.1 F6N18.1, related chr08_pseudomolecule_IMGAG_V3
9341518-9340611 H EGN_Mt090430 20090702
Length = 155
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 1347 GCRTTRRSISGYCIFLGSSLISWKSKKQTNVSRSSAEAEYRSMANTCLELTWIHYLLRDL 1406
G + ++S + Y +G++ ISW SKKQ V+ SS+EA+Y + + + WI LL +L
Sbjct: 66 GDQDDKKSTTCYLFMIGAAPISWSSKKQGIVALSSSEAKYVATSYAACQALWIEMLLEEL 125
Query: 1407 KVSQTGPASLFCDNQAALHIAANPVFHER 1435
+ L DN+ A+ +A P+ H +
Sbjct: 126 NAFEVDRIKLLVDNKLAIDLADRPISHGK 154
>IMGA|Medtr6g036540.1 Zinc finger, CCHC-type
chr06_pseudomolecule_IMGAG_V3 8117470-8116658 H
EGN_Mt090430 20090702
Length = 270
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/317 (20%), Positives = 122/317 (38%), Gaps = 68/317 (21%)
Query: 40 GHMLVPVK--LNGENYRSWSKAMIHALTAKNKLGFIDGSLEAP--SQEEKPTELALWNQC 95
H+ +P+ LNG NY W +AM L + ++ G + P S EK L W+
Sbjct: 4 SHVTIPITITLNGSNYNQWPEAMCGFLKGRRLWRYVTGDKKCPTISLAEK---LEEWDSK 60
Query: 96 NSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQIQKSIATISQGS- 154
N I++W + + + A +VW K +++ + +Q+ K ++ + Q S
Sbjct: 61 NHQIITWCRKTSTPSIHLQFGRFENAKEVWDYLKQRYTISDLSHQYQLLKDLSNLKQQSG 120
Query: 155 MSVASYYTKLKALWDELENYRDPYTCNHAKAHQEQLQEDRLMQFLMGMNESYKGVRSNIL 214
V + +++ +W++L + +P+
Sbjct: 121 QPVYEFLAQMEIIWNQLASC-EPF------------------------------------ 143
Query: 215 MMTPLPNVRQAYSLVIQEETQRQLSSEPAE-SFTIAANIQSKASGIKNNKTCDHCHRSGH 273
+ PLP + A + EET+ L + +F + I K C C +GH
Sbjct: 144 -LNPLPTLENALPCLKSEETRLGLLRQQDNLAFAVTKKIP---------KFCRVCQMTGH 193
Query: 274 TIEECRTLKYYCKFCDKGGHTEDRC---------RLKNNKGGPPQQNRG-SRSKPQSAAN 323
+ +C ++ C C K GH C ++N PPQ ++ ++ +P S
Sbjct: 194 SFPDCPNVE--CHNCKKKGHIASNCCRYCKTPGHLIQNCPTRPPQHDQNKNQQRPSSLKP 251
Query: 324 MAKNSSMNDGNSLMGFS 340
+ +S + +S FS
Sbjct: 252 VFATASNSPQSSQSAFS 268
>IMGA|Medtr5g029040.1 LTRGag-pol-polymerase 3, related
chr05_pseudomolecule_IMGAG_V3 12052697-12051982 H
EGN_Mt090430 20090702
Length = 223
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 100/217 (46%), Gaps = 23/217 (10%)
Query: 53 YRSWSKAMIHALTAKNKLGFIDGSLEAPSQEEKPTELALWNQCNSLILSWLTHSVEADLA 112
Y SW++ ++A A + I P + E A W+ ++++ W+ ++ DL
Sbjct: 6 YDSWAELFLNAANAFDVADHI-----IPPKNATVKEDAQWSCLDAIVKQWIYSTISIDLL 60
Query: 113 EGVIH-AKTAYQVWTDFKDQF-SQKNAPAIFQIQKSIATISQGSMSVASYYTKLKALWDE 170
++ TA + W KD F KN+ A++ Q+ + +SY LK + ++
Sbjct: 61 HTILKPGATAQEAWNRLKDIFHDNKNSRAVYLEQQFSQIHMDNYPNASSYCQALKLIAEQ 120
Query: 171 LENYRDPYTCNHAKAHQEQLQEDRL-MQFLMGMNESYKGVRSNILMMTPLPNVRQAYSLV 229
L N P + EDRL ++ + G++ Y + + I + PLP+ +A S++
Sbjct: 121 LGNVGAP------------VSEDRLVLRLVTGLSSGYDSLATIIQQLDPLPSFYKARSML 168
Query: 230 IQEETQRQLSSEPAESFTIAANIQSKASGIKNNKTCD 266
EET+R ++ AES + + QS S N++ +
Sbjct: 169 TLEETRRNKNT-GAESALV--HTQSDVSSAAPNRSSE 202
>IMGA|Medtr8g043360.1 Copia protein, related
chr08_pseudomolecule_IMGAG_V3 9348610-9348290 H
EGN_Mt090430 20090702
Length = 106
Score = 57.8 bits (138), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 52/96 (54%)
Query: 1398 WIHYLLRDLKVSQTGPASLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKP 1457
WI L +L + L DN++ + +A +P+ H +KHIE H +R+++ +
Sbjct: 9 WIEMLSEELNAFEVDRIKLLVDNKSTIDLADHPISHGISKHIERKFHFLRDQVNKMKLDL 68
Query: 1458 QYVPTRLQLADIFTKALGREQFQFLRSKLGIQNIHS 1493
+Y T +QLA+IFTK L + F L+ + ++ + S
Sbjct: 69 EYCNTEVQLANIFTKPLKKAMFDELKKLMVMKRLTS 104
>IMGA|Medtr8g128710.1 Polynucleotidyl transferase, Ribonuclease H
fold chr08_pseudomolecule_IMGAG_V3 30179997-30181475 E
EGN_Mt090430 20090702
Length = 98
Score = 57.0 bits (136), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 667 TPQQNGVVERKHRHILNVARSLFFQSHVPLKFWGECILTAVYLINRLPTPLLSNQSPYEK 726
TPQ NGV ER ++ +L AR + + FW E + T YL+NR P ++ ++ YE
Sbjct: 5 TPQHNGVAERMNQTLLEKARYMLSNVGLTRTFWAEAVNTTCYLVNRGPHTSINLKTLYEL 64
Query: 727 LYKRPPSLDHLRIFGCQCY 745
+ +LR+FGC Y
Sbjct: 65 WPGKSVDYSNLRVFGCTVY 83
>IMGA|Medtr7g029520.1 Integrase, catalytic region, putative
chr07_pseudomolecule_IMGAG_V3 7424834-7425131 H
EGN_Mt090430 20090702
Length = 74
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 30 PYYVHHSDQPGHMLVPVKLNGENYRSWSKAMIHALTAKNKLGFIDGSLEAPSQEE 84
PY+VH S + V +LNG+NY +WS M AL KNK F+DG++ P +E
Sbjct: 16 PYFVHPSKNSSTVSVTPQLNGDNYHAWSMKMRRALAMKNKFKFVDGTIPIPDDDE 70
>IMGA|Medtr4g045010.1 Polynucleotidyl transferase, Ribonuclease H
fold, related chr04_pseudomolecule_IMGAG_V3
10571280-10570869 H EGN_Mt090430 20090702
Length = 106
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1415 SLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKPQYVPTRLQLADIFTKAL 1474
+L DN + +++A NP+ H R+KHIE+ H +RE++ G +K ++ + Q+AD+ TK +
Sbjct: 26 TLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGV 85
Query: 1475 GREQFQFLRSKLGIQ 1489
E F R + I+
Sbjct: 86 KIEVFTKPRDSMEIE 100
>IMGA|Medtr3g040850.1 Retrotransposon gag protein
chr03_pseudomolecule_IMGAG_V3 11245103-11243742 H
EGN_Mt090430 20090702
Length = 190
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 84 EKPTELALWNQCNSLILSWLTHSVEADLAEGVIHAKTAYQVWTDFKDQFSQKNAPAIFQI 143
E PT + +CN++I +W+ + V A +++ VW + K++ S+ + ++++
Sbjct: 2 EMPTIM----ECNNVIHTWIMNYVSDSTAHSILYIDIVSDVWRELKERLSKTDRIRVWKL 57
Query: 144 QKSIATISQGSMSVASYYTKLKALWDELEN 173
+ I + QG+ SV YY +L++LW+ N
Sbjct: 58 KTKINNLKQGTNSVNDYYAELRSLWEVFLN 87
>IMGA|Medtr8g096240.1 hypothetical protein
chr08_pseudomolecule_IMGAG_V3 21119820-21118370 E
EGN_Mt090430 20090702
Length = 93
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 1086 RNWFTHQLDVQNAFLHGNLQEIVYMELPPGLCRQGE--NMVCRLNKSLYGLKQASRNWFS 1143
+N+ HQLD+++AF G++ E VY+E PP QG+ + V RL K+ Y LKQ+ R W
Sbjct: 25 KNYVLHQLDIKHAFQFGDVIEKVYIEPPPRFIAQGDLCDFVYRLYKASYNLKQSLRAWSD 84
Query: 1144 TFSEAL 1149
S L
Sbjct: 85 KVSAVL 90
>IMGA|Medtr4g045170.1 hypothetical protein
chr04_pseudomolecule_IMGAG_V3 10725937-10725201 H
EGN_Mt090430 20090702
Length = 197
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 46/75 (61%)
Query: 1415 SLFCDNQAALHIAANPVFHERTKHIEIDCHIVREKLQSGLVKPQYVPTRLQLADIFTKAL 1474
+L DN + +++A NP+ H R+KHIE+ H +RE++ G +K ++ + Q+AD+ TK +
Sbjct: 117 TLKIDNISTINLAKNPIAHGRSKHIEMRFHYLREQVSKGKLKLEHSKSENQIADVLTKGV 176
Query: 1475 GREQFQFLRSKLGIQ 1489
E F R + I+
Sbjct: 177 KIEVFTKPRDSMEIE 191
>IMGA|Medtr5g099250.1 Reverse transcriptase, RNA-dependent DNA
polymerase chr05_pseudomolecule_IMGAG_V3
39665230-39664877 H EGN_Mt090430 20090702
Length = 117
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 44/86 (51%)
Query: 1213 YFLGIEFSHSKKGIFMSQRKYALDILEDSGHTGSRPESFPMEQNVKLTLTDGEKLHDPTX 1272
YFLG+E S +F+SQ KYA D++ +G T + E +E N++ T DG L D T
Sbjct: 32 YFLGLEALSSNDDLFLSQAKYASDLVSQAGLTDCKIEYTRLEPNIQFTPQDGTLLDDATL 91
Query: 1273 XXXXXXXXXXXTVTRPDIVYSVRTLS 1298
T TRP+I Y V +S
Sbjct: 92 YWHFVGSLIYLTNTRPNISYFVHLVS 117
>IMGA|Medtr2g033520.1 hypothetical protein
chr02_pseudomolecule_IMGAG_V3 9151691-9150256 E
EGN_Mt090430 20090702
Length = 61
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%)
Query: 1436 TKHIEIDCHIVREKLQSGLVKPQYVPTRLQLADIFTKALGREQFQFLRSKLGIQNIHSPT 1495
+ H+EIDC + E ++ +K +V T QL D TKAL R QF L S LG+ NI+SPT
Sbjct: 2 SSHVEIDCPFICENVKFQFLKLVHVNTDQQLVDPLTKALPRIQFHLLVSMLGLINIYSPT 61
>IMGA|Medtr3g113930.1 hypothetical protein
chr03_pseudomolecule_IMGAG_V3 28729720-28728566 E
EGN_Mt090430 20090702
Length = 60
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 1435 RTKHIEIDCHIVREKLQSGLVKPQYVPTRLQLADIFTKALGREQFQFLRSKLG 1487
++KH E H +RE++ +G+ +Y P LQL D FTK L + F+FLR KLG
Sbjct: 5 KSKHTETVFHFIREEVTNGMHDVKYCPIELQLDDGFTKTLKLDMFEFLRKKLG 57
>IMGA|Medtr5g007330.1 Integrase, catalytic region, related
chr05_pseudomolecule_IMGAG_V3 1052977-1052588 H
EGN_Mt090430 20090702
Length = 129
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 164 LKALWDELENYR--------DPYTCNHAKAHQEQLQEDRLMQFLMGMNESYKGVRSNILM 215
+K LW ELE+ R +P TC+ + + ++ FL G+N +Y VR+ IL+
Sbjct: 1 MKILWYELEDLRPTPSCSCVNPCTCSLSNYVHNYKNMEYIICFLKGLNANYSNVRTQILL 60
Query: 216 MTPLPNVRQAYSLVIQE 232
M PLP++ + YS V Q+
Sbjct: 61 MDPLPSISKVYSSVSQQ 77
>IMGA|Medtr6g077060.1 RNA-directed DNA polymerase (Reverse
transcriptase); Ribonuclease H
chr06_pseudomolecule_IMGAG_V3 15141903-15146629 E
EGN_Mt090430 20090702
Length = 1200
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 560 PFPISSITTKIPFELLHCDVWGPHKIPSHSGARFFLTIVDDFTRCTWVFLMKQKSETSDL 619
P ++ I++ PF + D+ G + + +G RF L +D FT+ WV + T +
Sbjct: 847 PHALNVISSPWPFSMWGIDMIGRIEPKASNGHRFILVAIDYFTK--WVEAASYANVTKQV 904
Query: 620 LIKFIQFTKT-QFNTSVKIIRTDNGSEFQ--PLQNFLLNQGIEFQNTCVYTPQQNGVVER 676
+ KFI+ ++ KII TDNG+ +Q IE N+ Y PQ NG VE
Sbjct: 905 VAKFIKNNIICRYGVPSKII-TDNGTNLNNNVVQALCEEFKIEHHNSSPYRPQMNGAVEA 963
Query: 677 KHRHILNVARSL 688
+++I + + +
Sbjct: 964 ANKNIKRIVQKM 975