Jatropha Genome Database
- JcCA0045271.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0045271.30 - phase: 0 /partial
(122 letters)
Database: Medicago_aa3.0
53,423 sequences; 12,992,982 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
IMGA|Medtr2g129960.1 Argonaute and Dicer protein, PAZ; ATP-requi... 132 5e-32
IMGA|Medtr7g146220.1 Argonaute and Dicer protein, PAZ; ATP-requi... 81 2e-16
IMGA|Medtr3g110470.1 Ribonuclease III, bacterial chr03_pseudomol... 67 2e-12
IMGA|Medtr3g139020.1 Argonaute and Dicer protein, PAZ; ATP-requi... 66 5e-12
IMGA|Medtr3g110440.1 Ribonuclease III, bacterial chr03_pseudomol... 62 5e-11
IMGA|Medtr3g110420.1 Ribonuclease III, bacterial chr03_pseudomol... 62 8e-11
IMGA|Medtr3g142860.1 Ribonuclease III, bacterial chr03_pseudomol... 58 1e-09
>IMGA|Medtr2g129960.1 Argonaute and Dicer protein, PAZ; ATP-requiring
DNA helicase RecQ; Ribonuclease III, bacterial;
chr02_pseudomolecule_IMGAG_V3 31566180-31555830 H
EGN_Mt090430 20090702
Length = 1416
Score = 132 bits (331), Expect = 5e-32, Method: Composition-based stats.
Identities = 66/111 (59%), Positives = 88/111 (79%), Gaps = 2/111 (1%)
Query: 1 VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNFEK 60
VLGD+IESLAGAI+VDSGY+KEAV++SIRPLLEPL+TP+T+ +HP+RELNELCQK N+ K
Sbjct: 1305 VLGDIIESLAGAIFVDSGYDKEAVWKSIRPLLEPLVTPDTLTIHPIRELNELCQKMNYTK 1364
Query: 61 SKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAA-DKKTAKRVASKEVLRALK 110
K+ + R +G+ S EV+A G I + + + DKKTA R+A K VL +L+
Sbjct: 1365 EKT-LSRNDGVTSCKIEVIADGVIHQFEYKGSTDKKTATRLACKGVLHSLQ 1414
>IMGA|Medtr7g146220.1 Argonaute and Dicer protein, PAZ; ATP-requiring
DNA helicase RecQ; Ribonuclease III, bacterial; ;
chr07_pseudomolecule_IMGAG_V3 34948437-34935433 E
EGN_Mt090430 20090702
Length = 1939
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 45/55 (81%)
Query: 1 VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQK 55
VLGD++ES+AGAI++DSG N V++ +PLL P++TPET+ +HPVREL E CQ+
Sbjct: 1732 VLGDILESIAGAIFLDSGRNTAVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQ 1786
>IMGA|Medtr3g110470.1 Ribonuclease III, bacterial
chr03_pseudomolecule_IMGAG_V3 27836764-27840446 H
EGN_Mt090430 20090702
Length = 565
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 2 LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQKNNF 58
L D++ES GAI+VD G + E V++ + LLEP+I P TI+ HPV EL+E+CQK +
Sbjct: 353 LADIVESTIGAIFVDCGSSVETVWKVFKKLLEPIIDPNTIQRHPVTELHEVCQKKSL 409
>IMGA|Medtr3g139020.1 Argonaute and Dicer protein, PAZ; ATP-requiring
DNA helicase RecQ; Ribonuclease III, bacterial;
chr03_pseudomolecule_IMGAG_V3 35653717-35640861 H
EGN_Mt090430 20090702
Length = 1727
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 2 LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQK-NNFEK 60
LGD++ES+AGAI +D+ + + V++ PLL P++TPE + L P+REL +L F K
Sbjct: 1419 LGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPEKLELPPLRELMQLSDSLGYFVK 1478
Query: 61 SKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALKDTIYRISAER 120
K +K M V V E + +KK+AK A+ ++L+ L+ S+ +
Sbjct: 1479 VKVSHDKKGTMEHVEIRVQLPNERLVREGKGPNKKSAKGDAAFQLLKDLEKRGISYSSSK 1538
Query: 121 AK 122
K
Sbjct: 1539 GK 1540
>IMGA|Medtr3g110440.1 Ribonuclease III, bacterial
chr03_pseudomolecule_IMGAG_V3 27828500-27830293 H
EGN_Mt090430 20090702
Length = 160
Score = 62.4 bits (150), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 2 LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQK 55
L D++ES GA+++D + E V++ R LLEP+I P T+ HPV EL E+CQK
Sbjct: 40 LADMVESTIGALFIDCDSSLEIVWKVFRKLLEPIIEPNTVEKHPVSELQEVCQK 93
>IMGA|Medtr3g110420.1 Ribonuclease III, bacterial
chr03_pseudomolecule_IMGAG_V3 27823438-27824262 H
EGN_Mt090430 20090702
Length = 151
Score = 61.6 bits (148), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 2 LGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETIRLHPVRELNELCQK 55
L D++ES GA+++D + E V++ R LLEP+I P+ +HP+ EL E+CQK
Sbjct: 31 LADIVESTIGALFIDCNSSLEIVWKIFRKLLEPIIEPDAFEMHPLTELTEVCQK 84
>IMGA|Medtr3g142860.1 Ribonuclease III, bacterial
chr03_pseudomolecule_IMGAG_V3 36719047-36723284 E
EGN_Mt090430 20090702
Length = 344
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 1 VLGDVIESLAGAIYVDSGYNKEAVFRSIRPLLEPLITPETI--RLHPVRELNELCQKNNF 58
VL DV+ES+A A+YVD ++ + ++ IR LLEP++T + + PV L E+C KN
Sbjct: 136 VLADVVESVAAAVYVDLDFDLKKLWVVIRGLLEPIVTLNDLEQKPQPVTMLYEICHKNG- 194
Query: 59 EKSKSVVQRKNGMYSVTEEVVAHGEIFKHTSEAADKKTAKRVASKEVLRALK 110
K + +NG S T V GE+F S + K AK A+K ++ L+
Sbjct: 195 -KKVDIRHSRNGDKS-TASVYVDGELFAVAS-SDQKDIAKLDAAKSAVQKLE 243