Jatropha Genome Database

JcCA0045271.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045271.20 - phase: 0 
         (379 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr7g090040.1 Peptide chain release factor 2, putative ch...   639   0.0  
IMGA|Medtr1g062640.1 Class I peptide chain release factor; PCRF ...   266   1e-71
IMGA|Medtr7g130010.1 Peptide chain release factor 1 chr07_pseudo...   148   5e-36
IMGA|Medtr7g133970.1 Peptide chain release factor 1 chr07_pseudo...   145   3e-35
IMGA|Medtr6g070820.1 Class I peptide chain release factor chr06_...    54   1e-07

>IMGA|Medtr7g090040.1 Peptide chain release factor 2, putative
           chr07_pseudomolecule_IMGAG_V3 19982038-19977669 E
           EGN_Mt090430 20090702
          Length = 475

 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/379 (81%), Positives = 336/379 (88%)

Query: 1   MQDFYSLRRDVEAASERVEEIIASXXXXXXXXXXXXXXXXXXDSSLWDDRARAQEILSAL 60
           +QDFYSLR+DVE AS+RV+EI  S                   SS WDDRA+AQ+ LS L
Sbjct: 97  LQDFYSLRKDVEIASQRVKEIRESSGLQLLEQELAKLEEEASCSSFWDDRAKAQQTLSTL 156

Query: 61  TDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIVKELNKSLDRFELTQL 120
            DVK+KIKLL ++KT VEDAETIV LTEEM+S D GL EEA++++KELNKS+DRFELTQL
Sbjct: 157 ADVKEKIKLLNDYKTQVEDAETIVMLTEEMESVDKGLYEEASSLIKELNKSIDRFELTQL 216

Query: 121 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKS 180
           LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMY+RWGEKQRYKTRVVEKS GEEAGIKS
Sbjct: 217 LSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSLGEEAGIKS 276

Query: 181 VTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEE 240
            TIE+EGRYAYGYLSGEKGTHRIVRQSPFN+KGLRQTSFSGVEVMPLLPEES++VEIPEE
Sbjct: 277 ATIEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEESLNVEIPEE 336

Query: 241 DLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLV 300
           DLEI+FSRAGGKGGQNVNKVETAVRITHIPTGVT+RCTEERSQLANKIKALSRLKAKLLV
Sbjct: 337 DLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTLRCTEERSQLANKIKALSRLKAKLLV 396

Query: 301 IAVEQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMDGELEPF 360
           IA EQRA+E KQIRGD VKAEWGQQIRNYVFHPYKLVKDVRTG ET DI SV+DGEL+PF
Sbjct: 397 IAEEQRATEFKQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTGHETPDITSVIDGELDPF 456

Query: 361 IKAYLKYKYSMAMSASGSN 379
           IK+YLK+KYSM MS SG N
Sbjct: 457 IKSYLKHKYSMTMSTSGVN 475


>IMGA|Medtr1g062640.1 Class I peptide chain release factor; PCRF
           chr01_pseudomolecule_IMGAG_V3 12347972-12353026 H
           EGN_Mt090430 20090702
          Length = 398

 Score =  266 bits (679), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 150/363 (41%), Positives = 217/363 (59%), Gaps = 7/363 (1%)

Query: 4   FYSLRRDVEAASERVEEIIASXXXXXXXXXXXXXXXXXXDSSLWDDRARAQEILSALTDV 63
            +SLRR +E    R E + AS                  DS LWDD  ++ +IL  L + 
Sbjct: 40  LFSLRRKIEDTVIRAE-LYASSALEMEEASWIKQEEMVRDSDLWDDPTKSNDILVKLANS 98

Query: 64  KDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIVKELNKSLDRFELTQLLSG 123
              +  L + +  VE+A+ I +L E M++ D GL ++A     +++  LD++E+++LL G
Sbjct: 99  AKVVDSLKDLRYKVEEAKLIKQLAE-MNAIDYGLYKQAYDASVDVSNILDQYEISKLLKG 157

Query: 124 PYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKSVTI 183
           P+D  GA + I A A G  ++ WA+ LL+MYL W ++Q Y+ R+V++   E  GI S TI
Sbjct: 158 PFDMAGACLVIKA-ATGIFSKLWAEQLLQMYLGWAKRQGYEGRIVDRCLTENGGINSATI 216

Query: 184 EIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLE 243
           E E   AYGYL GEKG H ++R SP N     +TS + V+V+PL  E+++D+EI  EDL 
Sbjct: 217 EFEFECAYGYLLGEKGVHHLIRGSP-NESSQLETSTATVDVIPLFLEKALDLEIDSEDLI 275

Query: 244 ITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAV 303
           I+     G+  +   ++   V I HIPTG+TV+ + ERSQ ANK+KAL+RLKAKL VIA+
Sbjct: 276 ISSPLIHGEQKRQTQRI---VCIHHIPTGITVQSSGERSQFANKMKALNRLKAKLQVIAI 332

Query: 304 EQRASEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMDGELEPFIKA 363
           EQ    I  I  D +   W ++ R YV HPYKLV DV+T  E SD+NSV+DG + P I A
Sbjct: 333 EQGVGSINGIVKDKIVNLWEEKTRRYVSHPYKLVHDVKTDIEMSDLNSVLDGNIGPLIAA 392

Query: 364 YLK 366
           ++ 
Sbjct: 393 HIN 395


>IMGA|Medtr7g130010.1 Peptide chain release factor 1
           chr07_pseudomolecule_IMGAG_V3 30265859-30272353 E
           EGN_Mt090430 20090702
          Length = 416

 Score =  148 bits (373), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/311 (32%), Positives = 165/311 (53%), Gaps = 12/311 (3%)

Query: 56  ILSALTDVKDKIKLLTEFKTMVEDAETIVKLTEEMDSTDAGLLEEATAIVKELNKSLDRF 115
           ++S     KD  K L E + + +DA     +TE +         E  ++ K+L++  ++ 
Sbjct: 97  VVSLYQKFKDCEKTLEETQALAKDAGNDQDMTEMISY-------EIESLSKQLSELEEKL 149

Query: 116 ELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEE 175
           ++  L S P D+   ++ + AG GG +A  WA  L+RMY ++ E   +K   +  S  E+
Sbjct: 150 KVLLLPSDPLDERNIMLEVRAGTGGDEAGIWAGDLVRMYEKFSELNSWKHSAISCSEAEK 209

Query: 176 AGIKSVTIEIEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDV 235
            G K+  +EI+G   Y  L  E G HR+ R      +G   TS + V +MP + E  ++V
Sbjct: 210 GGYKTYVMEIKGNRVYSKLKFESGVHRVQRVPLTETQGRVHTSTATVAIMPEVDE--VEV 267

Query: 236 EIPEEDLEITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLK 295
            I  +D+E+T +R+GG GGQNVNKVETA+ + H PTG+ + CTE+R+Q+ NK  A   L+
Sbjct: 268 VIDPKDIEVTTARSGGAGGQNVNKVETAIDLVHKPTGIRIFCTEQRTQIQNKNLAFKLLR 327

Query: 296 AKLLVIAVEQRASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMD 354
           AKL  I V ++   I+  R   V      ++IR Y +   + V D R   +   + S + 
Sbjct: 328 AKLYEIKVREQQESIRNQRKSQVGTGARSEKIRTYNYKDNR-VTDHRLK-QNFSLTSFLG 385

Query: 355 GELEPFIKAYL 365
           G +E  +++ +
Sbjct: 386 GNIEEAVQSCV 396


>IMGA|Medtr7g133970.1 Peptide chain release factor 1
           chr07_pseudomolecule_IMGAG_V3 31515929-31520054 E
           EGN_Mt090430 20090702
          Length = 409

 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/242 (37%), Positives = 131/242 (54%), Gaps = 5/242 (2%)

Query: 126 DKEGAVISITAGAGGTDAQDWADMLLRMYLRWGEKQRYKTRVVEKSPGEEAGIKSVTIEI 185
           D+   ++ + AG GG +A  +A  + +MY ++   + +K  VV+ +  +  G K  T  I
Sbjct: 156 DERDCILEVRAGTGGEEASLFAMNIFKMYEKYAHNKGWKFDVVDIAQSDMKGFKEATAAI 215

Query: 186 EGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLEIT 245
            G   +G L  E G HR+ R       G   TS   V ++P   E  +DV++ +EDL+I 
Sbjct: 216 LGVGVFGKLKFESGIHRVQRVPVTEKLGRVHTSAVSVAILPQADE--VDVQLKKEDLKID 273

Query: 246 FSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAVEQ 305
           F R+GG GGQ+ NK  +AVR+THIPTG+ +   +ERSQ  NK KAL  L AKL  I   +
Sbjct: 274 FYRSGGSGGQHANKTSSAVRMTHIPTGIVIAIQDERSQHMNKAKALKVLCAKLYEIERTR 333

Query: 306 RASEIKQIRGDAV-KAEWGQQIRNYVFHPYKLVKDVRTGFETSDINSVMDGE-LEPFIKA 363
             S   ++R D +   +  ++IR Y F P   V D R G    +I+ VM GE L+ FI A
Sbjct: 334 LHSSRSKLRSDQIGSGDRSERIRTYNF-PQGRVTDHRVGITYHNIDDVMQGESLDAFIDA 392

Query: 364 YL 365
            L
Sbjct: 393 LL 394


>IMGA|Medtr6g070820.1 Class I peptide chain release factor
           chr06_pseudomolecule_IMGAG_V3 13457668-13454695 E
           EGN_Mt090430 20090702
          Length = 272

 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 7/76 (9%)

Query: 235 VEIPEEDL----EITFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLANKIKA 290
           +++ ++DL    E+   +  G GGQ+ NK E+AVR+ H+PTG+  +  E+RSQ  N+  A
Sbjct: 70  LDLTDDDLMRQCEMGTFKTSGPGGQHRNKRESAVRLKHLPTGIIAQAGEDRSQHMNRASA 129

Query: 291 LSRLKAKLLVIAVEQR 306
           + RL++   +IA++ R
Sbjct: 130 IKRLRS---LIALKVR 142