Jatropha Genome Database

JcCA0045271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045271.10 + phase: 2 /partial
         (205 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr3g157420.1 Orn/DAP/Arg decarboxylase 2 chr03_pseudomol...   191   2e-49
IMGA|Medtr5g022600.1 Diaminopimelate decarboxylase chr05_pseudom...    51   4e-07

>IMGA|Medtr3g157420.1 Orn/DAP/Arg decarboxylase 2
           chr03_pseudomolecule_IMGAG_V3 41516251-41514746 E
           EGN_Mt090430 20090702
          Length = 428

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 103/197 (52%), Positives = 127/197 (64%), Gaps = 7/197 (3%)

Query: 1   FHVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMRILNIGGGFRANPLFDEIVKTVNDS 60
           FH+GS  +D + YH AI  A+  F+TA +L MP M+IL+IGGGF +   FDE    VND+
Sbjct: 215 FHIGSGGADAKAYHGAILLAKEVFETASRLGMPKMKILDIGGGFTSGSKFDEAAFNVNDA 274

Query: 61  IQEFFSNDMTSLTVIAEPGRYFAETPFILVTNVIGKRMRGEEIDYWIDDGIHGS-----F 115
           I+  F ND   L VI EPGRYFAET F L T VIGKR+RGE  +YWIDDGI+G+     F
Sbjct: 275 IKTHFGND-EDLVVIGEPGRYFAETAFTLATKVIGKRVRGEMREYWIDDGIYGTLNNIVF 333

Query: 116 KLAANDPASLMYKVLLQNEDGAGPIT-SSTIFGPTCDSLDVVISGCELSELQVNDLIVFY 174
             A      L +    +N     P T  ST+FGPTCDS+D V+   EL EL+VND +VF 
Sbjct: 334 DYAIVKCMPLRFGSKPENVICKDPKTYPSTVFGPTCDSVDTVLKEYELPELKVNDWLVFP 393

Query: 175 NMGAYTTSFASKFNGFN 191
           NMGAYTTS  + FNGF+
Sbjct: 394 NMGAYTTSSGTNFNGFS 410


>IMGA|Medtr5g022600.1 Diaminopimelate decarboxylase
           chr05_pseudomolecule_IMGAG_V3 8835936-8840655 E
           EGN_Mt090430 20090702
          Length = 483

 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 84/192 (43%), Gaps = 11/192 (5%)

Query: 2   HVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMRILNIGGG-----FRANPLFDEIVKT 56
           H+GS  +   ++  A AT    +   I+ +   +  LNIGGG     + A  +  +  + 
Sbjct: 263 HLGSTITKVDIFRDA-ATIMVNYIDEIRAQGFEVDYLNIGGGLGIDYYHAGAVLPK-PRD 320

Query: 57  VNDSIQEFFSNDMTSLTVIAEPGRYFAETPFILVTNVIGKRMRGEEIDYWIDDGIHGSFK 116
           + D+++E   +    L +I EPGR        LV+ V G +  G +    ID  +    +
Sbjct: 321 LIDTVRELVLS--RGLKLIIEPGRSLIANTCCLVSRVTGVKTNGSKNFIVIDGSMAELIR 378

Query: 117 LAANDPASLMYKVLLQNEDGAGPITSSTIFGPTCDSLDVVISGCELSELQVNDLIVFYNM 176
            +  D  +  +  L+        IT+  + GP C+S D +  G EL        +V ++ 
Sbjct: 379 PSLYD--AYQHIELVSPAPANAEITTFDVVGPVCESADFLGKGRELPTPAKGTGLVVHDA 436

Query: 177 GAYTTSFASKFN 188
           GAY  S AS +N
Sbjct: 437 GAYCMSMASTYN 448