Jatropha Genome Database

JcCA0045261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045261.10 + phase: 0 /TE/partial
         (256 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr4g110620.1 polyprotein-like, related chr04_pseudomolec...   132   2e-31
IMGA|Medtr5g089840.1 copia LTR rider, related chr05_pseudomolecu...   128   3e-30
IMGA|Medtr6g036460.1 hypothetical protein chr06_pseudomolecule_I...   118   2e-27
IMGA|Medtr6g036320.1 hypothetical protein chr06_pseudomolecule_I...   118   2e-27
IMGA|Medtr2g100740.1 hypothetical protein chr02_pseudomolecule_I...    96   2e-20
IMGA|Medtr2g100470.1 hypothetical protein chr02_pseudomolecule_I...    96   2e-20
IMGA|Medtr7g071250.1 hypothetical protein chr07_pseudomolecule_I...    58   4e-09

>IMGA|Medtr4g110620.1 polyprotein-like, related
           chr04_pseudomolecule_IMGAG_V3 25158785-25159321 H
           EGN_Mt090430 20090702
          Length = 178

 Score =  132 bits (331), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 75/176 (42%), Positives = 101/176 (57%), Gaps = 7/176 (3%)

Query: 66  WEELDIKAASQIRMCLAKNVLANVLGXXXXXXXXXXXXXXYQGKNISNMLYLKEQFHTLK 125
           WEELD++ AS I +CL KN+ ANV                YQ K ISN L+ KE+FH L 
Sbjct: 6   WEELDLRTASVILLCLPKNLPANVQNLRSAKEFCKKLEGLYQAKKISNQLFPKEKFHNLH 65

Query: 126 MAEGTKLSDHLSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVV 185
           M EGTK+ +HL  LN I+ ELE++ V+  DEDKAL LILSLP  Y H+K VL YG + + 
Sbjct: 66  MDEGTKIFNHLCTLNDIIFELESIKVKIYDEDKALSLILSLPPFYVHLKLVLMYGKESLS 125

Query: 186 YADVVS--KLLTEERRLNEMKNKSYEDSALFVGTXXXX--XXXXXXXVVCWVCGQT 237
           + +V +  K+++EERR   MK+     S+L + T             + CW CG +
Sbjct: 126 FEEVATKIKIISEERR---MKSDESTSSSLMLLTKSGANGKRIGAKNMACWKCGMS 178


>IMGA|Medtr5g089840.1 copia LTR rider, related
           chr05_pseudomolecule_IMGAG_V3 34952559-34951978 H
           EGN_Mt090430 20090702
          Length = 154

 Score =  128 bits (321), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 99/167 (59%), Gaps = 19/167 (11%)

Query: 66  WEELDIKAASQIRMCLAKNVLANVLGXXXXXXXXXXXXXXYQGKNISNMLYLKEQFHTLK 125
           W+ELD++AAS I     K +   + G              YQ K ISN L LKEQFH L+
Sbjct: 6   WKELDLRAASAI----PKELWEKLEGL-------------YQAKGISNRLLLKEQFHNLR 48

Query: 126 MAEGTKLSDHLSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVV 185
           M EGTK+SDHLS LN+IVSELE++ V+ +DEDK LR+ILSLP +Y H+KPVL YG + + 
Sbjct: 49  MDEGTKISDHLSTLNNIVSELESIEVKIDDEDKTLRIILSLPPSYVHLKPVLMYGKESLS 108

Query: 186 YADVVSKLLTEERRLNEMKNKSYEDSALFVGTXXXXXXXXXXXVVCW 232
           + +V +K+++EE  +    ++S   S L + +             CW
Sbjct: 109 FEEVATKIISEEMTMK--SDESTSSSMLLIRSGANGKKIHAKDFSCW 153


>IMGA|Medtr6g036460.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 8068482-8067914 H
           EGN_Mt090430 20090702
          Length = 155

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 18/135 (13%)

Query: 66  WEELDIKAASQIRMCLAKNVLANVLGXXXXXXXXXXXXXXYQGKNISNMLYLKEQFHTLK 125
           WEELD++A S IR+CLAKNVL NV                YQ K+ISN L LKEQFH L+
Sbjct: 6   WEELDLRAVSAIRLCLAKNVLVNVQNLSSAKELWEKLKGLYQAKDISNRLLLKEQFHNLR 65

Query: 126 MAEGTKLSDHLSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVV 185
           M E                  E++ V+ +DEDKALR ILSLP +Y H+KPV  YG + + 
Sbjct: 66  MDE------------------ESIEVKIDDEDKALRFILSLPPSYVHLKPVFMYGKESLS 107

Query: 186 YADVVSKLLTEERRL 200
           + +V +K++ EERR+
Sbjct: 108 FEEVATKIIYEERRM 122


>IMGA|Medtr6g036320.1 hypothetical protein
           chr06_pseudomolecule_IMGAG_V3 7989980-7989412 H
           EGN_Mt090430 20090702
          Length = 155

 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 80/135 (59%), Gaps = 18/135 (13%)

Query: 66  WEELDIKAASQIRMCLAKNVLANVLGXXXXXXXXXXXXXXYQGKNISNMLYLKEQFHTLK 125
           WEELD++A S IR+CLAKNVL NV                YQ K+ISN L LKEQFH L+
Sbjct: 6   WEELDLRAVSAIRLCLAKNVLVNVQNLSSAKELWEKLKGLYQAKDISNRLLLKEQFHNLR 65

Query: 126 MAEGTKLSDHLSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVV 185
           M E                  E++ V+ +DEDKALR ILSLP +Y H+KPV  YG + + 
Sbjct: 66  MDE------------------ESIEVKIDDEDKALRFILSLPPSYVHLKPVFMYGKESLS 107

Query: 186 YADVVSKLLTEERRL 200
           + +V +K++ EERR+
Sbjct: 108 FEEVATKIIYEERRM 122


>IMGA|Medtr2g100740.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 23540921-23533162 H
           EGN_Mt090430 20090702
          Length = 96

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 30/121 (24%)

Query: 66  WEELDIKAASQIRMCLAKNVLANVLGXXXXXXXXXXXXXXYQGKNISNMLYLKEQFHTLK 125
           WEELD++AAS I +CL KNVLAN                              EQFH L+
Sbjct: 6   WEELDLRAASAICLCLEKNVLAN------------------------------EQFHNLR 35

Query: 126 MAEGTKLSDHLSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVV 185
           M EGTK+SD+LS LN+IVSELE++ V  +DEDK LR I SLP  Y + K VL +  + + 
Sbjct: 36  MDEGTKISDNLSTLNNIVSELESIEVMIDDEDKVLRRIFSLPPFYVYHKLVLMFEKERLS 95

Query: 186 Y 186
           +
Sbjct: 96  F 96


>IMGA|Medtr2g100470.1 hypothetical protein
           chr02_pseudomolecule_IMGAG_V3 23413375-23412996 H
           EGN_Mt090430 20090702
          Length = 96

 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 69/121 (57%), Gaps = 30/121 (24%)

Query: 66  WEELDIKAASQIRMCLAKNVLANVLGXXXXXXXXXXXXXXYQGKNISNMLYLKEQFHTLK 125
           WEELD++AAS I +CL KNVLAN                              EQFH L+
Sbjct: 6   WEELDLRAASAICLCLEKNVLAN------------------------------EQFHNLR 35

Query: 126 MAEGTKLSDHLSVLNSIVSELETLGVQTEDEDKALRLILSLPSTYEHMKPVLKYGSKEVV 185
           M EGTK+SD+LS LN+IVSELE++ V  +DEDK LR I SLP  Y + K VL +  + + 
Sbjct: 36  MDEGTKISDNLSTLNNIVSELESIEVMIDDEDKVLRRIFSLPPFYVYHKLVLMFEKERLS 95

Query: 186 Y 186
           +
Sbjct: 96  F 96


>IMGA|Medtr7g071250.1 hypothetical protein
           chr07_pseudomolecule_IMGAG_V3 14623791-14623982 H
           EGN_Mt090430 20090702
          Length = 63

 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 36/58 (62%)

Query: 66  WEELDIKAASQIRMCLAKNVLANVLGXXXXXXXXXXXXXXYQGKNISNMLYLKEQFHT 123
           WEELD++A S I M LAKN+L NVLG              Y+ K++SN L LKE+FH+
Sbjct: 6   WEELDLRALSTICMSLAKNILVNVLGTSSTKVLWEKLDELYKAKHVSNQLLLKEKFHS 63