Jatropha Genome Database

JcCA0045131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045131.20 + phase: 0 /partial
         (111 letters)

Database: Medicago_aa3.0 
           53,423 sequences; 12,992,982 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

IMGA|Medtr1g007400.1 Contains a weak similarity to Rap8, related...    77   2e-15
IMGA|Medtr3g156440.1 Contains a weak similarity to Rap8, related...    64   3e-11

>IMGA|Medtr1g007400.1 Contains a weak similarity to Rap8, related
           chr01_pseudomolecule_IMGAG_V3 418969-416416 H
           EGN_Mt090430 20090702
          Length = 195

 Score = 77.0 bits (188), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/36 (91%), Positives = 36/36 (100%)

Query: 76  YSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
           YSLPGQK+DPPEE+EPLRIFYESLSKQIP+SEMAEF
Sbjct: 82  YSLPGQKHDPPEEKEPLRIFYESLSKQIPTSEMAEF 117


>IMGA|Medtr3g156440.1 Contains a weak similarity to Rap8, related
           chr03_pseudomolecule_IMGAG_V3 41013455-41016830 F
           EGN_Mt090430 20090702
          Length = 263

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 76  YSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
           Y LPGQK DPPEER+P R+FYE+L +QIP+SEMA+ 
Sbjct: 120 YDLPGQKRDPPEERDPSRVFYETLHEQIPTSEMAQI 155